mRNA_M-pyrifera_M_contig99081.22797.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig99081.22797.1
Unique NamemRNA_M-pyrifera_M_contig99081.22797.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig99081.22797.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig99081contigM-pyrifera_M_contig99081:3..386 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size384
Cds size378
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816907.768166-UTR-M-pyrifera_M_contig99081:2..81622816907.768166-UTR-M-pyrifera_M_contig99081:2..8Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig99081 3..8 +
1692278248.7553475-UTR-M-pyrifera_M_contig99081:2..81692278248.7553475-UTR-M-pyrifera_M_contig99081:2..8Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig99081 3..8 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816907.780714-CDS-M-pyrifera_M_contig99081:8..3861622816907.780714-CDS-M-pyrifera_M_contig99081:8..386Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99081 9..386 +
1692278248.764689-CDS-M-pyrifera_M_contig99081:8..3861692278248.764689-CDS-M-pyrifera_M_contig99081:8..386Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99081 9..386 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig99081.22797.1prot_M-pyrifera_M_contig99081.22797.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig99081 9..386 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig99081.22797.1

>prot_M-pyrifera_M_contig99081.22797.1 ID=prot_M-pyrifera_M_contig99081.22797.1|Name=mRNA_M-pyrifera_M_contig99081.22797.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=126bp
MMSSGSETEKEIAALALKNLVIASPRNQDAICRAGGITLVVSLLTTGSRR
AKEIAAEVLINLAMRPTHSAAIREHGDIAPLVSLLSAGSEEGKCHAAFAL
ANLAALGANRDAIREAGGVEALVFLV
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mRNA from alignment at M-pyrifera_M_contig99081:3..386+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig99081.22797.1 ID=mRNA_M-pyrifera_M_contig99081.22797.1|Name=mRNA_M-pyrifera_M_contig99081.22797.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=384bp|location=Sequence derived from alignment at M-pyrifera_M_contig99081:3..386+ (Macrocystis pyrifera P11B4 male)
GTGGAGATGATGTCGAGTGGGAGTGAAACAGAGAAGGAGATTGCGGCATT
GGCGCTGAAAAATCTCGTTATCGCCAGCCCCAGAAACCAGGATGCGATCT
GCAGAGCAGGGGGCATCACTCTCGTCGTCTCTCTCCTGACGACTGGGAGC
AGGAGAGCGAAGGAAATAGCTGCAGAGGTGTTGATCAACCTCGCGATGAG
ACCCACACACAGTGCCGCAATCCGAGAGCACGGGGATATCGCTCCTCTCG
TCTCCCTCCTGAGTGCTGGGAGTGAGGAGGGCAAGTGCCACGCTGCATTC
GCGTTGGCAAATCTCGCTGCTCTCGGTGCGAACAGGGACGCAATCCGCGA
GGCAGGGGGTGTGGAAGCGTTGGTGTTCCTGGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig99081:3..386+

>mRNA_M-pyrifera_M_contig99081.22797.1 ID=mRNA_M-pyrifera_M_contig99081.22797.1|Name=mRNA_M-pyrifera_M_contig99081.22797.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=756bp|location=Sequence derived from alignment at M-pyrifera_M_contig99081:3..386+ (Macrocystis pyrifera P11B4 male)
ATGATGTCGAGTGGGAGTGAAACAGAGAAGGAGATTGCGGCATTGGCGCT
GAAAAATCTCGTTATCGCCAGCCCCAGAAACCAGGATGCGATCTGCAGAG
CAGGGGGCATCACTCTCGTCGTCTCTCTCCTGACGACTGGGAGCAGGAGA
GCGAAGGAAATAGCTGCAGAGGTGTTGATCAACCTCGCGATGAGACCCAC
ACACAGTGCCGCAATCCGAGAGCACGGGGATATCGCTCCTCTCGTCTCCC
TCCTGAGTGCTGGGAGTGAGGAGGGCAAGTGCCACGCTGCATTCGCGTTG
GCAAATCTCGCTGCTCTCGGTGCGAACAGGGACGCAATCCGCGAGGCAGG
GGGTGTGGAAGCGTTGGTGTTCCTGGTGATGATGTCGAGTGGGAGTGAAA
CAGAGAAGGAGATTGCGGCATTGGCGCTGAAAAATCTCGTTATCGCCAGC
CCCAGAAACCAGGATGCGATCTGCAGAGCAGGGGGCATCACTCTCGTCGT
CTCTCTCCTGACGACTGGGAGCAGGAGAGCGAAGGAAATAGCTGCAGAGG
TGTTGATCAACCTCGCGATGAGACCCACACACAGTGCCGCAATCCGAGAG
CACGGGGATATCGCTCCTCTCGTCTCCCTCCTGAGTGCTGGGAGTGAGGA
GGGCAAGTGCCACGCTGCATTCGCGTTGGCAAATCTCGCTGCTCTCGGTG
CGAACAGGGACGCAATCCGCGAGGCAGGGGGTGTGGAAGCGTTGGTGTTC
CTGGTG
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