mRNA_M-pyrifera_M_contig99078.22794.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig99078.22794.1
Unique NamemRNA_M-pyrifera_M_contig99078.22794.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig99078.22794.1 vs. uniprot
Match: A0A7S2DJI8_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2DJI8_9EUKA)

HSP 1 Score: 49.7 bits (117), Expect = 9.120e-5
Identity = 36/87 (41.38%), Postives = 42/87 (48.28%), Query Frame = 1 
Query:   31 RKFHSAMQFRG--QVLVYGGVGANGEVLNDLAVFDAASNQWLDPSARLRRLGVTPPARFAMAFFTVSESQLALYGGAEASGSANRDL 285
            RK HS M F G  Q  +YGG GA+ E+L+DL VFD    QW  P A    L   P  R   A   V+E  L +YGG    G     L
Sbjct:   89 RKNHS-MTFGGTSQFWIYGGRGADDELLSDLFVFDMQEEQWSQPQA----LSTPPEPRENHAACFVAERYLVIYGGTNDEGEVLNSL 170
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig99078.22794.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S2DJI8_9EUKA9.120e-541.38Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig99078contigM-pyrifera_M_contig99078:349..642 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size294
Cds size294
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816907.6696658-CDS-M-pyrifera_M_contig99078:348..6421622816907.6696658-CDS-M-pyrifera_M_contig99078:348..642Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99078 349..642 -
1692278248.7223878-CDS-M-pyrifera_M_contig99078:348..6421692278248.7223878-CDS-M-pyrifera_M_contig99078:348..642Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99078 349..642 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig99078.22794.1prot_M-pyrifera_M_contig99078.22794.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig99078 349..642 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig99078.22794.1

>prot_M-pyrifera_M_contig99078.22794.1 ID=prot_M-pyrifera_M_contig99078.22794.1|Name=mRNA_M-pyrifera_M_contig99078.22794.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=98bp
MARKPGWPAARKFHSAMQFRGQVLVYGGVGANGEVLNDLAVFDAASNQWL
DPSARLRRLGVTPPARFAMAFFTVSESQLALYGGAEASGSANRDLWLM
back to top

mRNA from alignment at M-pyrifera_M_contig99078:349..642-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig99078.22794.1 ID=mRNA_M-pyrifera_M_contig99078.22794.1|Name=mRNA_M-pyrifera_M_contig99078.22794.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=294bp|location=Sequence derived from alignment at M-pyrifera_M_contig99078:349..642- (Macrocystis pyrifera P11B4 male)
ATGGCCCGCAAGCCCGGGTGGCCAGCAGCCAGAAAGTTCCACTCTGCGAT
GCAGTTTCGAGGGCAGGTGCTCGTGTACGGCGGGGTGGGGGCGAACGGAG
AGGTACTGAACGACCTGGCCGTGTTTGATGCCGCCTCCAACCAGTGGCTG
GACCCTTCTGCCCGGCTCCGGCGGCTGGGCGTGACTCCACCGGCTCGGTT
CGCGATGGCCTTCTTCACAGTATCAGAGAGCCAGCTGGCGCTGTACGGCG
GTGCAGAGGCCAGCGGATCGGCGAACCGCGACCTGTGGCTCATG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig99078:349..642-

>mRNA_M-pyrifera_M_contig99078.22794.1 ID=mRNA_M-pyrifera_M_contig99078.22794.1|Name=mRNA_M-pyrifera_M_contig99078.22794.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=588bp|location=Sequence derived from alignment at M-pyrifera_M_contig99078:349..642- (Macrocystis pyrifera P11B4 male)
ATGGCCCGCAAGCCCGGGTGGCCAGCAGCCAGAAAGTTCCACTCTGCGAT
GCAGTTTCGAGGGCAGGTGCTCGTGTACGGCGGGGTGGGGGCGAACGGAG
AGGTACTGAACGACCTGGCCGTGTTTGATGCCGCCTCCAACCAGTGGCTG
GACCCTTCTGCCCGGCTCCGGCGGCTGGGCGTGACTCCACCGGCTCGGTT
CGCGATGGCCTTCTTCACAGTATCAGAGAGCCAGCTGGCGCTGTACGGCG
GTGCAGAGGCCAGCGGATCGGCGAACCGCGACCTGTGGCTCATGATGGCC
CGCAAGCCCGGGTGGCCAGCAGCCAGAAAGTTCCACTCTGCGATGCAGTT
TCGAGGGCAGGTGCTCGTGTACGGCGGGGTGGGGGCGAACGGAGAGGTAC
TGAACGACCTGGCCGTGTTTGATGCCGCCTCCAACCAGTGGCTGGACCCT
TCTGCCCGGCTCCGGCGGCTGGGCGTGACTCCACCGGCTCGGTTCGCGAT
GGCCTTCTTCACAGTATCAGAGAGCCAGCTGGCGCTGTACGGCGGTGCAG
AGGCCAGCGGATCGGCGAACCGCGACCTGTGGCTCATG
back to top