mRNA_M-pyrifera_M_contig99072.22791.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig99072.22791.1
Unique NamemRNA_M-pyrifera_M_contig99072.22791.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig99072.22791.1 vs. uniprot
Match: F0ZB33_DICPU (H15 domain-containing protein n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZB33_DICPU)

HSP 1 Score: 50.8 bits (120), Expect = 3.770e-5
Identity = 35/91 (38.46%), Postives = 53/91 (58.24%), Query Frame = 1 
Query:   25 PAHPPFQTMALAAVAGLKSRKPVSAHAVRKYVLAEYTVQEG-TAARHLRVALAKLVEEGLLARVAASFKLTAAGRAALAKKG----RKPAA 282
            P HP +Q M   A+A LK R   S  A+ KY+   Y V +     R LR+AL +L+++G+L ++ AS+KL+  G+ A   +G    +KPAA
Sbjct:   19 PNHPTYQVMISHAIAALKERFGSSQPAIIKYIENNYNVGDSENFKRQLRLALKRLLKDGVLVQIKASYKLSEEGKKAHKSEGGAATKKPAA 109
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BLAST of mRNA_M-pyrifera_M_contig99072.22791.1 vs. uniprot
Match: A0A6A0GQM3_HYAAZ (histone H1-delta-like n=1 Tax=Hyalella azteca TaxID=294128 RepID=A0A6A0GQM3_HYAAZ)

HSP 1 Score: 50.1 bits (118), Expect = 8.860e-5
Identity = 33/83 (39.76%), Postives = 45/83 (54.22%), Query Frame = 1 
Query:   31 HPPFQTMALAAVAGLKSRKPVSAHAVRKYVLAEYTVQEGTAARHLRVALAKLVEEGLLARVAAS-----FKLTAAGRAALAKK 264
            HP +  M  AAVA LK RK  SA A++KY+ A Y V+E +   ++R AL + V  G L +V  S     FKL  + +    KK
Sbjct:   33 HPKYSEMVTAAVAALKERKGSSARAIKKYIAANYKVEEKSIGTYVRSALKRGVSSGQLTQVKGSGANGSFKLAESAKPKKEKK 115
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig99072.22791.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
F0ZB33_DICPU3.770e-538.46H15 domain-containing protein n=1 Tax=Dictyosteliu... [more]
A0A6A0GQM3_HYAAZ8.860e-539.76histone H1-delta-like n=1 Tax=Hyalella azteca TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig99072contigM-pyrifera_M_contig99072:172..552 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size381
Cds size381
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816907.5538175-CDS-M-pyrifera_M_contig99072:171..5521622816907.5538175-CDS-M-pyrifera_M_contig99072:171..552Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99072 172..552 -
1692278248.6744285-CDS-M-pyrifera_M_contig99072:171..5521692278248.6744285-CDS-M-pyrifera_M_contig99072:171..552Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99072 172..552 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig99072.22791.1prot_M-pyrifera_M_contig99072.22791.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig99072 172..552 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig99072.22791.1

>prot_M-pyrifera_M_contig99072.22791.1 ID=prot_M-pyrifera_M_contig99072.22791.1|Name=mRNA_M-pyrifera_M_contig99072.22791.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=127bp
MPSSAPKAPAHPPFQTMALAAVAGLKSRKPVSAHAVRKYVLAEYTVQEGT
AARHLRVALAKLVEEGLLARVAASFKLTAAGRAALAKKGRKPAAKAAAKK
AGAKASAKAAAKKGAAKAAPKARGPAA
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mRNA from alignment at M-pyrifera_M_contig99072:172..552-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig99072.22791.1 ID=mRNA_M-pyrifera_M_contig99072.22791.1|Name=mRNA_M-pyrifera_M_contig99072.22791.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=381bp|location=Sequence derived from alignment at M-pyrifera_M_contig99072:172..552- (Macrocystis pyrifera P11B4 male)
ATGCCCAGCTCTGCCCCCAAGGCGCCCGCGCATCCGCCCTTCCAGACGAT
GGCCCTCGCGGCCGTCGCGGGCCTCAAGAGCCGCAAGCCGGTCTCTGCCC
ACGCAGTGCGCAAGTACGTGCTGGCCGAGTACACGGTGCAGGAGGGCACC
GCGGCGCGCCACCTGCGCGTGGCGCTGGCCAAGCTGGTGGAGGAGGGCCT
GCTGGCGCGCGTCGCCGCCTCCTTCAAGCTCACCGCCGCCGGCCGCGCGG
CGCTCGCCAAGAAGGGCCGCAAGCCCGCGGCCAAGGCTGCGGCCAAGAAG
GCAGGCGCCAAGGCCTCTGCTAAGGCCGCGGCCAAGAAGGGCGCCGCAAA
GGCCGCGCCCAAGGCCCGCGGCCCCGCGGCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig99072:172..552-

>mRNA_M-pyrifera_M_contig99072.22791.1 ID=mRNA_M-pyrifera_M_contig99072.22791.1|Name=mRNA_M-pyrifera_M_contig99072.22791.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=762bp|location=Sequence derived from alignment at M-pyrifera_M_contig99072:172..552- (Macrocystis pyrifera P11B4 male)
ATGCCCAGCTCTGCCCCCAAGGCGCCCGCGCATCCGCCCTTCCAGACGAT
GGCCCTCGCGGCCGTCGCGGGCCTCAAGAGCCGCAAGCCGGTCTCTGCCC
ACGCAGTGCGCAAGTACGTGCTGGCCGAGTACACGGTGCAGGAGGGCACC
GCGGCGCGCCACCTGCGCGTGGCGCTGGCCAAGCTGGTGGAGGAGGGCCT
GCTGGCGCGCGTCGCCGCCTCCTTCAAGCTCACCGCCGCCGGCCGCGCGG
CGCTCGCCAAGAAGGGCCGCAAGCCCGCGGCCAAGGCTGCGGCCAAGAAG
GCAGGCGCCAAGGCCTCTGCTAAGGCCGCGGCCAAGAAGGGCGCCGCAAA
GGCCGCGCCCAAGGCCCGCGGCCCCGCGGCGATGCCCAGCTCTGCCCCCA
AGGCGCCCGCGCATCCGCCCTTCCAGACGATGGCCCTCGCGGCCGTCGCG
GGCCTCAAGAGCCGCAAGCCGGTCTCTGCCCACGCAGTGCGCAAGTACGT
GCTGGCCGAGTACACGGTGCAGGAGGGCACCGCGGCGCGCCACCTGCGCG
TGGCGCTGGCCAAGCTGGTGGAGGAGGGCCTGCTGGCGCGCGTCGCCGCC
TCCTTCAAGCTCACCGCCGCCGGCCGCGCGGCGCTCGCCAAGAAGGGCCG
CAAGCCCGCGGCCAAGGCTGCGGCCAAGAAGGCAGGCGCCAAGGCCTCTG
CTAAGGCCGCGGCCAAGAAGGGCGCCGCAAAGGCCGCGCCCAAGGCCCGC
GGCCCCGCGGCG
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