mRNA_M-pyrifera_M_contig9907.22790.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig9907.22790.1
Unique NamemRNA_M-pyrifera_M_contig9907.22790.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig9907.22790.1 vs. uniprot
Match: D7FI84_ECTSI (Sulfotransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI84_ECTSI)

HSP 1 Score: 116 bits (291), Expect = 8.810e-30
Identity = 60/78 (76.92%), Postives = 67/78 (85.90%), Query Frame = 1 
Query:    1 DEDEELARQRDYLNGLVAESVSRTRGQACNVAFAKTHKTASTTLAMILVRYARRHDKKLASFGGPHVSAIPLEEAVEQ 234
            +E EEL+R+R YLNGLV E+   T  QACN+AFAKTHKTASTT+AMILVRYARRHD KLASFGG HVSAIPL EAV+Q
Sbjct:    8 EEMEELSRERAYLNGLVEETAEATGQQACNLAFAKTHKTASTTMAMILVRYARRHDMKLASFGGNHVSAIPLTEAVQQ 85
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BLAST of mRNA_M-pyrifera_M_contig9907.22790.1 vs. uniprot
Match: A0A6H5JL02_9PHAE (ST protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL02_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 5.360e-29
Identity = 60/78 (76.92%), Postives = 68/78 (87.18%), Query Frame = 1 
Query:    1 DEDEELARQRDYLNGLVAESVSRTRGQACNVAFAKTHKTASTTLAMILVRYARRHDKKLASFGGPHVSAIPLEEAVEQ 234
            +E EEL+R+R YLNGLV E+ + T  QACN+AFAKTHKTASTT+AMILVRYARRHD KLASFGG HVSAIPL EAV+Q
Sbjct:  197 EEMEELSRERAYLNGLVEETAAATGQQACNLAFAKTHKTASTTMAMILVRYARRHDMKLASFGGNHVSAIPLTEAVQQ 274
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BLAST of mRNA_M-pyrifera_M_contig9907.22790.1 vs. uniprot
Match: A0A6H5JVG3_9PHAE (ST protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVG3_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 1.380e-22
Identity = 51/75 (68.00%), Postives = 58/75 (77.33%), Query Frame = 1 
Query:   10 EELARQRDYLNGLVAESVSRTRGQACNVAFAKTHKTASTTLAMILVRYARRHDKKLASFGGPHVSAIPLEEAVEQ 234
            EE A+ R+ LN +V ES  +T GQ CNVAF KTHKTASTTLAMI VRYA+RHDKKLASF G  VS +PL  AV+Q
Sbjct:   89 EETAKCRELLNLMVTESAGKTGGQKCNVAFVKTHKTASTTLAMIFVRYAKRHDKKLASFEGRFVSNVPLAVAVQQ 163
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BLAST of mRNA_M-pyrifera_M_contig9907.22790.1 vs. uniprot
Match: D7G4H5_ECTSI (Sulfotransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4H5_ECTSI)

HSP 1 Score: 90.1 bits (222), Expect = 6.760e-20
Identity = 45/63 (71.43%), Postives = 50/63 (79.37%), Query Frame = 1 
Query:   46 LVAESVSRTRGQACNVAFAKTHKTASTTLAMILVRYARRHDKKLASFGGPHVSAIPLEEAVEQ 234
            +V ES  +T GQ CNVAF KTHKTASTTLAMI VRYA+RHDKKLASF G  VS +PL  AV+Q
Sbjct:    1 MVTESAGKTGGQMCNVAFVKTHKTASTTLAMIFVRYAKRHDKKLASFEGRFVSNVPLAVAVQQ 63
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BLAST of mRNA_M-pyrifera_M_contig9907.22790.1 vs. uniprot
Match: D8LRU8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRU8_ECTSI)

HSP 1 Score: 85.5 bits (210), Expect = 7.910e-18
Identity = 45/69 (65.22%), Postives = 51/69 (73.91%), Query Frame = 1 
Query:   28 RDYLNGLVAESVSRTRGQACNVAFAKTHKTASTTLAMILVRYARRHDKKLASFGGPHVSAIPLEEAVEQ 234
            R YLN LVA S ++T GQ  N+AF KTHKTASTT A +L RYARRH+ KLA F   H SAIPL EAV+Q
Sbjct:   81 RSYLNNLVANSAAQTEGQLSNIAFIKTHKTASTTFAFLLYRYARRHNVKLAHFDD-HNSAIPLREAVQQ 148
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BLAST of mRNA_M-pyrifera_M_contig9907.22790.1 vs. uniprot
Match: D8LK91_ECTSI (Sulfotransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK91_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 3.570e-16
Identity = 41/68 (60.29%), Postives = 50/68 (73.53%), Query Frame = 1 
Query:   28 RDYLNGLVAESVSRTRGQACNVAFAKTHKTASTTLAMILVRYARRHDKKLASFGGPHVSAIPLEEAVE 231
            R+YLN LV ESV+ T+ Q CN+AF KTHKTASTT A +L RY +RHD  +A F G H S+I L EA+E
Sbjct:    7 REYLNLLVDESVAATKNQTCNIAFVKTHKTASTTAATLLYRYGKRHDLNVAHFHG-HQSSIELPEAIE 73
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BLAST of mRNA_M-pyrifera_M_contig9907.22790.1 vs. uniprot
Match: A0A6H5JMW5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMW5_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 4.730e-14
Identity = 42/74 (56.76%), Postives = 49/74 (66.22%), Query Frame = 1 
Query:   13 ELARQRDYLNGLVAESVSRTRGQACNVAFAKTHKTASTTLAMILVRYARRHDKKLASFGGPHVSAIPLEEAVEQ 234
            + A QRDYLNGLVA S      Q  N+A  KTHKT STTLA++L RY RRHD ++A F G   S IP+EEA  Q
Sbjct:  130 DAAGQRDYLNGLVAASAENKDEQLSNLALFKTHKTGSTTLAILLHRYGRRHDLEVAHFPG-FGSTIPIEEAARQ 202
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BLAST of mRNA_M-pyrifera_M_contig9907.22790.1 vs. uniprot
Match: D8LI80_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI80_ECTSI)

HSP 1 Score: 72.4 bits (176), Expect = 4.320e-13
Identity = 37/66 (56.06%), Postives = 46/66 (69.70%), Query Frame = 1 
Query:   37 LNGLVAESVSRTRGQACNVAFAKTHKTASTTLAMILVRYARRHDKKLASFGGPHVSAIPLEEAVEQ 234
            LNGLVA +V R RGQ CNVAF KTHKTASTT+  +L RY  RH +++A F     +A+ LE A E+
Sbjct:  155 LNGLVAAAVERQRGQECNVAFVKTHKTASTTITAVLYRYGLRHGRRVARFK-VEGTAVTLEHAAEE 219
[Close]
BLAST of mRNA_M-pyrifera_M_contig9907.22790.1 vs. uniprot
Match: D7FX25_ECTSI (Sulfotransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FX25_ECTSI)

HSP 1 Score: 70.9 bits (172), Expect = 1.490e-12
Identity = 39/68 (57.35%), Postives = 45/68 (66.18%), Query Frame = 1 
Query:    4 EDEELARQRDYLNGLVAESVSRTRGQACNVAFAKTHKTASTTLAMILVRYARRHDKKLASF--GGPHV 201
            ED  +   RDYLNGLV +S S+   Q  N+AF KTHKTASTTLA IL RY  RHD  +A F  GG +V
Sbjct:  136 EDLPVEAMRDYLNGLVYDSASKRTEQLSNIAFIKTHKTASTTLASILYRYGMRHDSNIAKFDQGGTYV 203
[Close]
BLAST of mRNA_M-pyrifera_M_contig9907.22790.1 vs. uniprot
Match: D8LRU7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRU7_ECTSI)

HSP 1 Score: 68.9 bits (167), Expect = 5.500e-12
Identity = 38/66 (57.58%), Postives = 45/66 (68.18%), Query Frame = 1 
Query:   28 RDYLNGLVAESVSRTRGQACNVAFAKTHKTASTTLAMILVRYARRHDKKLASFGGPHVSAIPLEEA 225
            R YLN LV  ++  T  Q  NVAF KTHKTASTTLA I+ RYA RH+ KL+ FGG   SA+ L+ A
Sbjct:  105 RSYLNELVEATMLDTDSQVANVAFVKTHKTASTTLAAIMYRYAARHELKLSHFGGG--SAVSLKSA 168
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig9907.22790.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D7FI84_ECTSI8.810e-3076.92Sulfotransferase n=1 Tax=Ectocarpus siliculosus Ta... [more]
A0A6H5JL02_9PHAE5.360e-2976.92ST protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Tax... [more]
A0A6H5JVG3_9PHAE1.380e-2268.00ST protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Tax... [more]
D7G4H5_ECTSI6.760e-2071.43Sulfotransferase n=1 Tax=Ectocarpus siliculosus Ta... [more]
D8LRU8_ECTSI7.910e-1865.22Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D8LK91_ECTSI3.570e-1660.29Sulfotransferase n=1 Tax=Ectocarpus siliculosus Ta... [more]
A0A6H5JMW5_9PHAE4.730e-1456.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LI80_ECTSI4.320e-1356.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FX25_ECTSI1.490e-1257.35Sulfotransferase n=2 Tax=Ectocarpus TaxID=2879 Rep... [more]
D8LRU7_ECTSI5.500e-1257.58Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig9907contigM-pyrifera_M_contig9907:193..1837 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score91.7
Seed ortholog evalue1.7e-16
Seed eggNOG ortholog2880.D7G4H5
Preferred nameGAL3ST3
KEGG rclassRC00007,RC00231
KEGG koko:K01019,ko:K09676
KEGG ReactionR04017,R05105,R10805
KEGG Pathwayko00565,ko00600,ko01100,map00565,map00600,map01100
KEGG ModuleM00067
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005975,GO:0005976,GO:0005996,GO:0006022,GO:0006029,GO:0006790,GO:0006807,GO:0008146,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009311,GO:0009987,GO:0016020,GO:0016021,GO:0016740,GO:0016782,GO:0017076,GO:0019538,GO:0030166,GO:0030246,GO:0030309,GO:0030554,GO:0031224,GO:0032553,GO:0032555,GO:0032559,GO:0034645,GO:0036094,GO:0043167,GO:0043168,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044281,GO:0044425,GO:0050656,GO:0050694,GO:0050698,GO:0071704,GO:0097159,GO:0097367,GO:1901135,GO:1901137,GO:1901265,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901681
EggNOG free text desc.galactosylceramide sulfotransferase activity
EggNOG OGs2CM97@1,2QPNT@2759
EC2.8.2.11
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01003
Exons3
Model size234
Cds size234
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig9907.22790.1prot_M-pyrifera_M_contig9907.22790.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig9907 193..1837 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816907.492784-CDS-M-pyrifera_M_contig9907:192..2731622816907.492784-CDS-M-pyrifera_M_contig9907:192..273Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9907 193..273 +
1692278248.6275864-CDS-M-pyrifera_M_contig9907:192..2731692278248.6275864-CDS-M-pyrifera_M_contig9907:192..273Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9907 193..273 +
1622816907.507582-CDS-M-pyrifera_M_contig9907:1197..12901622816907.507582-CDS-M-pyrifera_M_contig9907:1197..1290Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9907 1198..1290 +
1692278248.6478539-CDS-M-pyrifera_M_contig9907:1197..12901692278248.6478539-CDS-M-pyrifera_M_contig9907:1197..1290Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9907 1198..1290 +
1622816907.5180132-CDS-M-pyrifera_M_contig9907:1777..18371622816907.5180132-CDS-M-pyrifera_M_contig9907:1777..1837Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9907 1778..1837 +
1692278248.663771-CDS-M-pyrifera_M_contig9907:1777..18371692278248.663771-CDS-M-pyrifera_M_contig9907:1777..1837Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9907 1778..1837 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig9907.22790.1

>prot_M-pyrifera_M_contig9907.22790.1 ID=prot_M-pyrifera_M_contig9907.22790.1|Name=mRNA_M-pyrifera_M_contig9907.22790.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=78bp
DEDEELARQRDYLNGLVAESVSRTRGQACNVAFAKTHKTASTTLAMILVR
YARRHDKKLASFGGPHVSAIPLEEAVEQ
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mRNA from alignment at M-pyrifera_M_contig9907:193..1837+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig9907.22790.1 ID=mRNA_M-pyrifera_M_contig9907.22790.1|Name=mRNA_M-pyrifera_M_contig9907.22790.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1645bp|location=Sequence derived from alignment at M-pyrifera_M_contig9907:193..1837+ (Macrocystis pyrifera P11B4 male)
GACGAAGATGAGGAGCTGGCGAGGCAGCGCGACTATCTAAACGGTCTCGT
CGCTGAGAGCGTGTCGAGGACAAGAGGGCAGGTGCGTGACGGCCTCCGAT
CGAAGTCGGAGCTCTGAAATCGCTGTTAAAGCGTGCAGGTGTTGTTTTTC
CCGCAAACAGCGCGGTTGGACCTCCCAGGCGTTTCTGACACCCCACGGAG
CGATGTGGCGGGCCCCGGGAGTGACGGTCAACTAACGCTCTCCGCACTTG
CAAGTTTGTCAGTGGAGCGAGAGCGGCGTTTGTTTGTTCGTGTGTGCGAG
TTTTTTTTGTGTCTTTGTTTTATGATTTTTGTTCATTTGTTTATGTTTGA
AGTGACATCTGCTGTGAGATCGATCGTATTCGACTTTTTTGTTTGTTTGT
TTTTTTGTTGTTGCAGTCTCTGCGTTTAATTTTTTCGGTCGCGTGTACGA
CGTAGGTTATGACCTCGTGGGGGGGATGATGTAGGTCCGTGACTTTTTTC
TTTTTTTTTGTGTCGTGTGTTTTTCTCTCGCGTTTCCGCTTGCGCTTGCG
CTTGCACTTGCGCTGGCGCTTGGCACAGATGAGTGCGCCGTGATCGTCCC
AGCAAGTAACGCACTATATTTTAGTTCGGCGACGGACTTTCGCGAGTCGT
GAGCGGGAGTGACGGCCGATGACGCATGCCACCGCTCGACCAAATTTTTC
CTGGGACCGATAAGACATTTTGCGCCTGGACGAGACACGCTCTGTGTTGC
TCGCGCATCCAACCCCCCCCCCCGCCCCCCGACCCCTTCTTGATCAGCCC
AACTCCACCCAACATGACCCAACACAAGTAGATATAACACACCCCTCCGC
TTCCTACCCCACCCCACCCCACCCCACCCCACCCCACCCCACCTCACATC
ATCTAGCCCCACGTCACCTCATCTACCCCACGCTCACGCCACCCCACACA
CCCCACCCGCGACCTCGCTGTCCGTACGGTCGTCTCCTCCTTATGGTCGT
TGCAGGCCTGTAACGTTGCCTTTGCGAAGACGCACAAGACCGCTTCCACG
ACCCTGGCGATGATTCTAGTGCGATACGCCCGTCGGCACGACAAGAAGGT
ACGCAGGGGCTGGTCTTCAGTCGGTCGCCAGTCGACGCTGCGCAATCTCG
TGTGTGTGCGTGTAGCTCCTTTTTTTTTGGTGATCGCTGGTCTTTCTTTC
GTGGCCGAAACTATGCTACTACCGCACCTCGAGCTATATGGAATATATAG
GCCGCGCCCACCCCTTTTTTCTGCTGTCGTTGTTGCAGTTTCCAACCCAT
TTTGTGAATCTTGAGTCTCGTCCCGCTTCCTCCTCCCTCCTCCCTCCCCT
TCTCTCCCCCCCCCCCCCCCCCCCCCCGTCCCCCCCCCCCCCCCCCCCCC
CCCCTCCTCTCTCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCCCTCCGCG
CCTCCCCCCCCCCCCCCCCCCCCTCCTCCCTCTCCCCCCCCCCCTCCCCC
CCCCCCCCCCCCCCGCGACCCCTCTCCTTCTCCCCCCCCCCTCGCCTCAC
CCTCTTGACTGGGCGCTCGATGGTGATTCTCCCAGCTTGCATCCTTTGGA
GGGCCACACGTGTCGGCTATTCCACTAGAAGAGGCTGTTGAGCAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig9907:193..1837+

>mRNA_M-pyrifera_M_contig9907.22790.1 ID=mRNA_M-pyrifera_M_contig9907.22790.1|Name=mRNA_M-pyrifera_M_contig9907.22790.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=468bp|location=Sequence derived from alignment at M-pyrifera_M_contig9907:193..1837+ (Macrocystis pyrifera P11B4 male)
GACGAAGATGAGGAGCTGGCGAGGCAGCGCGACTATCTAAACGGTCTCGT
CGCTGAGAGCGTGTCGAGGACAAGAGGGCAGGACGAAGATGAGGAGCTGG
CGAGGCAGCGCGACTATCTAAACGGTCTCGTCGCTGAGAGCGTGTCGAGG
ACAAGAGGGCAGGCCTGTAACGTTGCCTTTGCGAAGACGCACAAGACCGC
TTCCACGACCCTGGCGATGATTCTAGTGCGATACGCCCGTCGGCACGACA
AGAAGGCCTGTAACGTTGCCTTTGCGAAGACGCACAAGACCGCTTCCACG
ACCCTGGCGATGATTCTAGTGCGATACGCCCGTCGGCACGACAAGAAGCT
TGCATCCTTTGGAGGGCCACACGTGTCGGCTATTCCACTAGAAGAGGCTG
TTGAGCAGCTTGCATCCTTTGGAGGGCCACACGTGTCGGCTATTCCACTA
GAAGAGGCTGTTGAGCAG
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