mRNA_M-pyrifera_M_contig99067.22789.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig99067.22789.1
Unique NamemRNA_M-pyrifera_M_contig99067.22789.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig99067.22789.1 vs. uniprot
Match: A0A7S2BI12_9STRA (F-actin-capping protein subunit beta n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BI12_9STRA)

HSP 1 Score: 131 bits (329), Expect = 5.160e-35
Identity = 64/134 (47.76%), Postives = 92/134 (68.66%), Query Frame = 1
Query:    1 VDGSKHLKSGGWDSIHVLEVTPTVDGKATYKLTSTIMISMGVEGDKLGTADLSGSLERQREETRAVSEEGDHVANIGEMVETMENDLRANLDVLYISRTHHVVDSMRSMRSGPEHTREFLSSLESAVKTMGGSK 402
            V G   +  GGWDSIHV+EVT   DGKATYKLTST+M++MGV+   +G ++LSG + +Q+E T  V+E   H+ NIG M+E ME D+R+N+D LYI +T  +V+SMR +   P+  + F ++L +AV   G S+
Sbjct:  140 VQGHAFVSDGGWDSIHVVEVTEKGDGKATYKLTSTLMLTMGVQKASVGDSNLSGCMTKQKELTLPVTEVKPHIVNIGSMIEDMEIDMRSNMDNLYIQKTREIVNSMRRVTGAPKQGQNFTANLNAAVAAHGASR 273          
BLAST of mRNA_M-pyrifera_M_contig99067.22789.1 vs. uniprot
Match: F0YCA6_AURAN (F-actin-capping protein subunit beta n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YCA6_AURAN)

HSP 1 Score: 127 bits (319), Expect = 1.720e-33
Identity = 66/135 (48.89%), Postives = 87/135 (64.44%), Query Frame = 1
Query:    1 VDGSKHLKSGGWDSIHVLEVTPTVDGKATYKLTSTIMISMGVEGDKLGTADLSGSLERQREETRAVSEEGDHVANIGEMVETMENDLRANLDVLYISRTHHVVDSMRSMRSGPEHTREFLSSLESAVKTMGGSKA 405
            V G + + +G WDSIHV+EV    DG+ATYKLT+T+M+SM V    +G ++LSGSL R  E+  AV E   HVANIG M+E ME D+R  LD LYI +T  VV S+R +  GP   + F  +L SAV   G ++A
Sbjct:  141 VSGHEFVSTGAWDSIHVVEVAEAGDGRATYKLTTTVMLSMDVHKPAVGDSNLSGSLTRMAEKACAVDEAHPHVANIGSMIEDMETDIRTYLDSLYIQKTREVVSSIRKLHKGPTQDKGFTMNLNSAVLKHGKNRA 275          
BLAST of mRNA_M-pyrifera_M_contig99067.22789.1 vs. uniprot
Match: A0A6U4L9K2_9STRA (F-actin-capping protein subunit beta n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4L9K2_9STRA)

HSP 1 Score: 118 bits (296), Expect = 4.890e-30
Identity = 55/135 (40.74%), Postives = 97/135 (71.85%), Query Frame = 1
Query:    1 VDGSKHLKSGGWDSIHVLEVTPTVDGK-ATYKLTSTIMISMGVEGDKLGTADLSGSLERQREETRAVSEEGDHVANIGEMVETMENDLRANLDVLYISRTHHVVDSMRSMRSGPEHTREFLSSLESAVKTMGGSK 402
            ++ +  +K+G W+SIHV+EV+    GK A+YKLT+T+++S  V+  + G+ DLSGSL RQ+  T  ++ E  H++N+GE++E ME ++R+N++ LY+ +T  +V+S+RSM +GP+   +F++SL +AV   G ++
Sbjct:  143 IESTGVVKAGSWNSIHVIEVSEQDGGKKASYKLTTTVLLSADVDKPECGSTDLSGSLTRQKARTCEINAEHTHLSNMGEIIEDMETEMRSNMNALYVQKTREIVNSIRSMATGPKQEADFVNSLNAAVMAHGDTR 277          
BLAST of mRNA_M-pyrifera_M_contig99067.22789.1 vs. uniprot
Match: A0A7S2F5N5_9STRA (F-actin-capping protein subunit beta n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F5N5_9STRA)

HSP 1 Score: 117 bits (293), Expect = 1.280e-29
Identity = 63/135 (46.67%), Postives = 87/135 (64.44%), Query Frame = 1
Query:    1 VDGSKHLKSGGWDSIHVLEVTPTVDGKATYKLTSTIMISMGVEGDKLGTADLSGSLERQREETRAVSEEGDHVANIGEMVETMENDLRANLDVLYISRTHHVVDSMRSMR-SGPEHTREFLSSLESAVKTMGGSK 402
            V+G   + +G WDSIHV+EVT    G+ATYKLTST+++SMGV    +G ++LSG + +Q+E T  V+    H  N+G M+E ME +LR+N+D LYIS+T  +V SMR+MR   P     F +SL  AV   G  K
Sbjct:  142 VEGHAFVSAGSWDSIHVVEVTEKGGGQATYKLTSTLLLSMGVNKAAVGDSNLSGCMTKQKEMTCEVTAVRPHTTNMGTMIEDMEIELRSNMDSLYISKTREIVSSMRNMRLRAPVQGANFTNSLNQAVLGHGAKK 276          
BLAST of mRNA_M-pyrifera_M_contig99067.22789.1 vs. uniprot
Match: A0A812SN25_SYMMI (F-actin-capping protein subunit beta n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812SN25_SYMMI)

HSP 1 Score: 115 bits (287), Expect = 2.780e-29
Identity = 59/135 (43.70%), Postives = 92/135 (68.15%), Query Frame = 1
Query:    1 VDGSKHLKSGGWDSIHVLEVTPTVDGKATYKLTSTIMISMGVEGDKLGTADLSGSLERQREETRAV-SEEGDHVANIGEMVETMENDLRANLDVLYISRTHHVVDSMRSMRSGPEHTREFLSSLESAVKTMGGSK 402
            V+ ++ +  G WDSIHV+EV  T   KA+YKLT+T+M++M V  +++G+ ++SGSL RQ E T  V + E  H+ANIG ++E  E D+R+NL+ LYI +T  +V+S+RS + GP  +   ++SL +AV   G S+
Sbjct:   83 VEDNRFVNRGSWDSIHVVEVVETAPKKASYKLTTTVMLTMSVAREEVGSTNMSGSLTRQVESTCDVDNNEKSHLANIGRLIEEQEGDMRSNLNELYILKTREIVNSIRSNKDGPIQSASHVASLNAAVTGHGMSR 217          
BLAST of mRNA_M-pyrifera_M_contig99067.22789.1 vs. uniprot
Match: A0A2D4C0S5_PYTIN (F-actin-capping protein subunit beta, putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C0S5_PYTIN)

HSP 1 Score: 110 bits (275), Expect = 1.760e-25
Identity = 59/141 (41.84%), Postives = 89/141 (63.12%), Query Frame = 1
Query:    1 VDGSKHLKSGGWDSIHVLEVT----PTVDGK--ATYKLTSTIMISMGVEGDKLGTADLSGSLERQREETRAVSEEGDHVANIGEMVETMENDLRANLDVLYISRTHHVVDSMRSMRSGPEHTREFLSSLESAVKTMGGSKA 405
            V GS+ +++G W+SIHV EV     P V GK  ATY+LT+T++++M V   +LG     G+L RQ E T  +++  DHV+N+G MVE ME D+R+++D LYIS+T  V++ MR ++ GP     F+  L  A+   G  K+
Sbjct:  734 VVGSRFVENGSWNSIHVFEVQETAEPAVAGKKKATYRLTTTVLLAMKVNRPELGDTTFDGTLTRQAERTLEIADAFDHVSNMGRMVEDMEIDMRSSMDGLYISKTREVINGMRKLQQGPVAANAFVGELTGAILQHGLKKS 874          
BLAST of mRNA_M-pyrifera_M_contig99067.22789.1 vs. uniprot
Match: D0NIM1_PHYIT (F-actin-capping protein subunit beta n=11 Tax=Phytophthora TaxID=4783 RepID=D0NIM1_PHYIT)

HSP 1 Score: 105 bits (262), Expect = 5.800e-25
Identity = 57/136 (41.91%), Postives = 83/136 (61.03%), Query Frame = 1
Query:   13 KHLKSGGWDSIHVLEVTPTVD------GKATYKLTSTIMISMGVEGDKLGTADLSGSLERQREETRAVSEEGDHVANIGEMVETMENDLRANLDVLYISRTHHVVDSMRSMRSGPEHTREFLSSLESAVKTMGGSK 402
            + ++ G W+SIHV+EV    D       KATY+LT+++++SM V   +LG   L G+L RQ E T    ++  HV+N+G MVE ME D+R++LD LYIS+T  V++ MR ++ GP     F+  L SAV   G  K
Sbjct:  150 RFIEKGEWNSIHVIEVQEGSDVLDKGVKKATYRLTTSVLLSMKVNRPELGDLTLDGTLTRQAERTMEFEDQFAHVSNMGRMVEDMEIDMRSSLDGLYISKTREVINGMRKLQQGPAMANPFVGELNSAVLKHGQKK 285          
BLAST of mRNA_M-pyrifera_M_contig99067.22789.1 vs. uniprot
Match: A0A0W8BZL2_PHYNI (F-actin-capping protein subunit beta n=7 Tax=Phytophthora TaxID=4783 RepID=A0A0W8BZL2_PHYNI)

HSP 1 Score: 108 bits (269), Expect = 1.070e-24
Identity = 58/136 (42.65%), Postives = 84/136 (61.76%), Query Frame = 1
Query:   13 KHLKSGGWDSIHVLEVTPTVD------GKATYKLTSTIMISMGVEGDKLGTADLSGSLERQREETRAVSEEGDHVANIGEMVETMENDLRANLDVLYISRTHHVVDSMRSMRSGPEHTREFLSSLESAVKTMGGSK 402
            + ++ GGW+SIHV+EV    D       KATY+LT+++++SM V   +LG   L G+L RQ E T    ++  HV+N+G MVE ME D+R++LD LYIS+T  V++ MR ++ GP     F+  L SAV   G  K
Sbjct:  149 RFVEKGGWNSIHVIEVQEGSDVLDKGVKKATYRLTTSVLLSMKVNRPELGDLTLDGTLTRQAERTMEFEDQFAHVSNMGRMVEDMEIDMRSSLDGLYISKTREVINGMRKLQQGPAMANPFVGELNSAVLKHGQKK 284          
BLAST of mRNA_M-pyrifera_M_contig99067.22789.1 vs. uniprot
Match: A0A3M6VD80_9STRA (F-actin-capping protein subunit beta n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VD80_9STRA)

HSP 1 Score: 103 bits (256), Expect = 4.110e-24
Identity = 54/133 (40.60%), Postives = 82/133 (61.65%), Query Frame = 1
Query:   13 KHLKSGGWDSIHVLEVTPTVD------GKATYKLTSTIMISMGVEGDKLGTADLSGSLERQREETRAVSEEGDHVANIGEMVETMENDLRANLDVLYISRTHHVVDSMRSMRSGPEHTREFLSSLESAVKTMG 393
            + ++ G W+SIHV+EV  + D       KATY+LT+++++ M V   +LG   L G+L RQ E T    ++  HV+N+G MVE ME D+R++LD LYIS+T  V++ MR ++ GP     F+  L  AV+  G
Sbjct:  147 RFVEKGSWNSIHVIEVQESSDVLEKGLKKATYRLTTSVLLFMKVNRPELGHLSLDGTLTRQAERTMKFEDQFAHVSNMGRMVEDMEIDMRSSLDGLYISKTREVINGMRKLQQGPNLANPFVGELAGAVRKHG 279          
BLAST of mRNA_M-pyrifera_M_contig99067.22789.1 vs. uniprot
Match: K3WFG7_GLOUD (F-actin-capping protein subunit beta n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WFG7_GLOUD)

HSP 1 Score: 102 bits (253), Expect = 1.310e-23
Identity = 57/144 (39.58%), Postives = 87/144 (60.42%), Query Frame = 1
Query:   13 KHLKSGGWDSIHVLEV--------TPTVDG-----KATYKLTSTIMISMGVEGDKLGTADLSGSLERQREETRAVSEEGDHVANIGEMVETMENDLRANLDVLYISRTHHVVDSMRSMRSGPEHTREFLSSLESAVKTMGGSKA 405
            + ++ G W+SIHV+EV        T T +G     KATY+LT+T++++M V   +LG   L G+L RQ E+T    ++  HV+N+G MVE ME ++R+++D LYIS+T  V++ MR ++ GP     F+  L  AV   G  KA
Sbjct:  147 RFVEKGSWNSIHVIEVQEMNDAAATSTNNGRGVLKKATYRLTTTVLLAMKVNRPELGDLTLDGTLTRQTEKTLEFEDQFAHVSNMGRMVEDMEIEMRSSMDGLYISKTREVINGMRKLQQGPSQGNAFVGELAGAVLKHGLKKA 290          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig99067.22789.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2BI12_9STRA5.160e-3547.76F-actin-capping protein subunit beta n=1 Tax=Flore... [more]
F0YCA6_AURAN1.720e-3348.89F-actin-capping protein subunit beta n=1 Tax=Aureo... [more]
A0A6U4L9K2_9STRA4.890e-3040.74F-actin-capping protein subunit beta n=1 Tax=Phaeo... [more]
A0A7S2F5N5_9STRA1.280e-2946.67F-actin-capping protein subunit beta n=1 Tax=Dicty... [more]
A0A812SN25_SYMMI2.780e-2943.70F-actin-capping protein subunit beta n=1 Tax=Symbi... [more]
A0A2D4C0S5_PYTIN1.760e-2541.84F-actin-capping protein subunit beta, putative n=1... [more]
D0NIM1_PHYIT5.800e-2541.91F-actin-capping protein subunit beta n=11 Tax=Phyt... [more]
A0A0W8BZL2_PHYNI1.070e-2442.65F-actin-capping protein subunit beta n=7 Tax=Phyto... [more]
A0A3M6VD80_9STRA4.110e-2440.60F-actin-capping protein subunit beta n=1 Tax=Peron... [more]
K3WFG7_GLOUD1.310e-2339.58F-actin-capping protein subunit beta n=1 Tax=Globi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig99067contigM-pyrifera_M_contig99067:159..671 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score128.3
Seed ortholog evalue2.8e-27
Seed eggNOG ortholog44056.XP_009037895.1
KEGG koko:K10365
KEGG Pathwayko04144,map04144
Hectar predicted targeting categoryother localisation
GOsGO:0000902,GO:0003674,GO:0003779,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005856,GO:0005884,GO:0006950,GO:0006996,GO:0007010,GO:0007015,GO:0008064,GO:0008092,GO:0008150,GO:0008290,GO:0009266,GO:0009408,GO:0009628,GO:0009653,GO:0009987,GO:0010639,GO:0015629,GO:0016043,GO:0030029,GO:0030036,GO:0030832,GO:0030833,GO:0030834,GO:0030835,GO:0030837,GO:0031333,GO:0032271,GO:0032272,GO:0032502,GO:0032535,GO:0032956,GO:0032970,GO:0032989,GO:0032991,GO:0033043,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043242,GO:0043244,GO:0043254,GO:0044087,GO:0044422,GO:0044424,GO:0044430,GO:0044446,GO:0044464,GO:0044877,GO:0048519,GO:0048523,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051015,GO:0051016,GO:0051128,GO:0051129,GO:0051493,GO:0051494,GO:0051693,GO:0065007,GO:0065008,GO:0071840,GO:0090066,GO:0097435,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0110053,GO:1901879,GO:1901880,GO:1902903,GO:1902904
EggNOG free text desc.barbed-end actin filament capping
EggNOG OGsKOG3174@1,KOG3174@2759
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131,ko04147,ko04812
Exons2
Model size408
Cds size408
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816907.447023-CDS-M-pyrifera_M_contig99067:158..3891622816907.447023-CDS-M-pyrifera_M_contig99067:158..389Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99067 159..389 -
1692278248.5954971-CDS-M-pyrifera_M_contig99067:158..3891692278248.5954971-CDS-M-pyrifera_M_contig99067:158..389Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99067 159..389 -
1622816907.4614806-CDS-M-pyrifera_M_contig99067:494..6711622816907.4614806-CDS-M-pyrifera_M_contig99067:494..671Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99067 495..671 -
1692278248.6148355-CDS-M-pyrifera_M_contig99067:494..6711692278248.6148355-CDS-M-pyrifera_M_contig99067:494..671Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99067 495..671 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig99067.22789.1prot_M-pyrifera_M_contig99067.22789.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig99067 159..671 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig99067.22789.1

>prot_M-pyrifera_M_contig99067.22789.1 ID=prot_M-pyrifera_M_contig99067.22789.1|Name=mRNA_M-pyrifera_M_contig99067.22789.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=136bp
VDGSKHLKSGGWDSIHVLEVTPTVDGKATYKLTSTIMISMGVEGDKLGTA
DLSGSLERQREETRAVSEEGDHVANIGEMVETMENDLRANLDVLYISRTH
HVVDSMRSMRSGPEHTREFLSSLESAVKTMGGSKA*
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mRNA from alignment at M-pyrifera_M_contig99067:159..671-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig99067.22789.1 ID=mRNA_M-pyrifera_M_contig99067.22789.1|Name=mRNA_M-pyrifera_M_contig99067.22789.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=513bp|location=Sequence derived from alignment at M-pyrifera_M_contig99067:159..671- (Macrocystis pyrifera P11B4 male)
GTTGACGGCTCCAAGCACCTCAAGTCCGGCGGCTGGGATTCCATCCACGT GCTGGAGGTGACGCCCACCGTCGACGGCAAGGCAACCTACAAGCTCACCT CCACCATCATGATCAGCATGGGCGTCGAGGGGGACAAGCTGGGCACCGCC GACCTGTCCGGCAGCCTGGAGCGCCAGGTGCGAGCTGTTCCGCGCGTGCA CGCGTGCCCACACACACCCTATCTCACACGCACACACACACACACACACA CACACACACACACCGGCCCCGTTGCTCTGCAGCGCGAGGAGACGCGCGCG GTGTCGGAGGAAGGCGACCACGTGGCGAACATTGGGGAGATGGTGGAGAC GATGGAGAACGATTTGCGGGCAAACCTGGACGTGCTGTACATCAGCCGGA CGCACCACGTGGTGGACAGCATGCGCAGCATGCGGAGCGGGCCGGAGCAC ACCAGAGAGTTCCTGTCCAGTCTGGAGTCGGCGGTGAAGACGATGGGCGG CAGCAAGGCCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig99067:159..671-

>mRNA_M-pyrifera_M_contig99067.22789.1 ID=mRNA_M-pyrifera_M_contig99067.22789.1|Name=mRNA_M-pyrifera_M_contig99067.22789.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=816bp|location=Sequence derived from alignment at M-pyrifera_M_contig99067:159..671- (Macrocystis pyrifera P11B4 male)
GTTGACGGCTCCAAGCACCTCAAGTCCGGCGGCTGGGATTCCATCCACGT
GCTGGAGGTGACGCCCACCGTCGACGGCAAGGCAACCTACAAGCTCACCT
CCACCATCATGATCAGCATGGGCGTCGAGGGGGACAAGCTGGGCACCGCC
GACCTGTCCGGCAGCCTGGAGCGCCAGGTTGACGGCTCCAAGCACCTCAA
GTCCGGCGGCTGGGATTCCATCCACGTGCTGGAGGTGACGCCCACCGTCG
ACGGCAAGGCAACCTACAAGCTCACCTCCACCATCATGATCAGCATGGGC
GTCGAGGGGGACAAGCTGGGCACCGCCGACCTGTCCGGCAGCCTGGAGCG
CCAGCGCGAGGAGACGCGCGCGGTGTCGGAGGAAGGCGACCACGTGGCGA
ACATTGGGGAGATGGTGGAGACGATGGAGAACGATTTGCGGGCAAACCTG
GACGTGCTGTACATCAGCCGGACGCACCACGTGGTGGACAGCATGCGCAG
CATGCGGAGCGGGCCGGAGCACACCAGAGAGTTCCTGTCCAGTCTGGAGT
CGGCGGTGAAGACGATGGGCGGCAGCAAGGCCTGACGCGAGGAGACGCGC
GCGGTGTCGGAGGAAGGCGACCACGTGGCGAACATTGGGGAGATGGTGGA
GACGATGGAGAACGATTTGCGGGCAAACCTGGACGTGCTGTACATCAGCC
GGACGCACCACGTGGTGGACAGCATGCGCAGCATGCGGAGCGGGCCGGAG
CACACCAGAGAGTTCCTGTCCAGTCTGGAGTCGGCGGTGAAGACGATGGG
CGGCAGCAAGGCCTGA
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