mRNA_M-pyrifera_M_contig99053.22784.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig99053.22784.1
Unique NamemRNA_M-pyrifera_M_contig99053.22784.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig99053.22784.1 vs. uniprot
Match: A0A7S3YNU9_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3YNU9_9EUKA)

HSP 1 Score: 88.2 bits (217), Expect = 2.750e-18
Identity = 36/83 (43.37%), Postives = 57/83 (68.67%), Query Frame = 1
Query:   40 LCFLAESLAEGVDVRDRRYRLRSFASCFLGSDAVDWLMVHSDCTTRKEAVALGNKMQAAGLLSHVTNDHRFQDKPLFFRFKAV 288
            +  LA+ ++EG+D+RDR Y  +++ +CF GS+ VDW++ +   T+R EAV LGN +   G  SHV+ DH+F+DK LF+R  + 
Sbjct: 1127 IAELAQKMSEGLDIRDRTYHFKNYKACFCGSECVDWMINNGYVTSRSEAVILGNAVLRKGYFSHVSQDHKFKDKTLFYRMNST 1209          
BLAST of mRNA_M-pyrifera_M_contig99053.22784.1 vs. uniprot
Match: UPI00194E7D01 (mechanosensitive ion channel n=1 Tax=Spirulina major TaxID=270636 RepID=UPI00194E7D01)

HSP 1 Score: 85.9 bits (211), Expect = 1.710e-17
Identity = 33/72 (45.83%), Postives = 59/72 (81.94%), Query Frame = 1
Query:   64 AEGVDVRDRRYRLRSFASCFLGSDAVDWLMVHSDCTTRKEAVALGNKMQAAGLLSHVTNDHRFQDKPLFFRF 279
            +EG++++DRRYRL++++ CF+G++ VDWLMV  +C+ R++A+A+G  ++  G+L HVT++H F D+ LF++F
Sbjct:  574 SEGIEIKDRRYRLKTYSRCFIGAELVDWLMVREECS-REDAIAIGEHLRKRGILHHVTDEHPFLDEYLFYQF 644          
BLAST of mRNA_M-pyrifera_M_contig99053.22784.1 vs. uniprot
Match: A0A1L9QXS6_9CYAN (DEP domain-containing protein n=2 Tax=Cyanobacteria TaxID=1117 RepID=A0A1L9QXS6_9CYAN)

HSP 1 Score: 85.1 bits (209), Expect = 3.180e-17
Identity = 37/73 (50.68%), Postives = 54/73 (73.97%), Query Frame = 1
Query:   67 EGVDVRDRRYRLRSFASCFLGSDAVDWLMVHSDCTTRKEAVALGNKMQAAGLLSHVTNDHRFQDKPLFFRFKA 285
            EG+ +RDRRY L++F++CF+GS+AVDWLM H   +TR EA+ +G  M   G++ HV ++H F+D  LF+RF A
Sbjct:  534 EGISIRDRRYGLKAFSNCFVGSEAVDWLMEHEQ-STRPEAIMMGEMMVNLGIIHHVLDEHGFEDSLLFYRFYA 605          
BLAST of mRNA_M-pyrifera_M_contig99053.22784.1 vs. uniprot
Match: A0A835WVW9_9CHLO (DEP domain-containing protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835WVW9_9CHLO)

HSP 1 Score: 84.0 bits (206), Expect = 8.360e-17
Identity = 41/81 (50.62%), Postives = 51/81 (62.96%), Query Frame = 1
Query:   37 DLCFLAESLAEGVDVRDRRYRLRSFASCFLGSDAVDWLMVHSDCTTRKEAVALGNKMQAAGLLSHVTNDHRFQDKPLFFRF 279
            DL  LA +L  GV V+DRRY  R + +CF+G +AV WL+         EAVALGN M  AGL  HV  +HRF+D  LF+RF
Sbjct:    8 DLLQLAAALRRGVRVKDRRYLFRCYRACFVGQEAVAWLVAAGAAAGAAEAVALGNSMMEAGLFHHVVYEHRFEDDYLFYRF 88          
BLAST of mRNA_M-pyrifera_M_contig99053.22784.1 vs. uniprot
Match: A0A846D5T9_9CYAN (Mechanosensitive ion channel n=1 Tax=Moorena sp. SIO2B7 TaxID=2607823 RepID=A0A846D5T9_9CYAN)

HSP 1 Score: 83.6 bits (205), Expect = 1.110e-16
Identity = 36/74 (48.65%), Postives = 55/74 (74.32%), Query Frame = 1
Query:   64 AEGVDVRDRRYRLRSFASCFLGSDAVDWLMVHSDCTTRKEAVALGNKMQAAGLLSHVTNDHRFQDKPLFFRFKA 285
            +EG++++DRRYRL ++  CF+GS+AVDWL+   +C  R EAV LG ++   G++ HVT++H F+D  LF+RF A
Sbjct:  599 SEGLEIKDRRYRLNTYPDCFIGSEAVDWLVQKHNCM-RSEAVKLGQRLVDRGIIHHVTDEHPFEDDYLFYRFYA 671          
BLAST of mRNA_M-pyrifera_M_contig99053.22784.1 vs. uniprot
Match: A0A401IDG7_APHSA (Potassium efflux system protein KefA n=1 Tax=Aphanothece sacrum FPU1 TaxID=1920663 RepID=A0A401IDG7_APHSA)

HSP 1 Score: 82.8 bits (203), Expect = 2.050e-16
Identity = 41/93 (44.09%), Postives = 61/93 (65.59%), Query Frame = 1
Query:    1 IEDEIQQDEEMLDLCFLAESLAEGVDVRDRRYRLRSFASCFLGSDAVDWLMVHSDCTTRKEAVALGNKMQAAGLLSHVTNDHRFQDKPLFFRF 279
            IED + Q+E  LD         EG++++DRRYRL  ++ CF+GS+AVDWL  H +C  R+EA+ LG  +    ++ HVT++H F+D  LF+RF
Sbjct:  522 IEDRLSQEE--LDKMIEKMRSLEGIEIKDRRYRLNVYSHCFIGSEAVDWLTEHFNCL-RQEAIELGQILVERKIIHHVTDEHPFEDDYLFYRF 611          
BLAST of mRNA_M-pyrifera_M_contig99053.22784.1 vs. uniprot
Match: A0A0L0DTK9_THETB (Uncharacterized protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DTK9_THETB)

HSP 1 Score: 82.4 bits (202), Expect = 2.460e-16
Identity = 39/86 (45.35%), Postives = 57/86 (66.28%), Query Frame = 1
Query:   22 DEEMLDLCFLAESLAEGVDVRDRRYRLRSFASCFLGSDAVDWLMVHSDCTTRKEAVALGNKMQAAGLLSHVTNDHRFQDKPLFFRF 279
            D E+  +      +  GV+V+DR+YR + +  CF+GS+AVD+L+ +    +R EAV LG KM+AAGL SHV +DH F+D  LF+ F
Sbjct:  130 DNELAAVMIHFRDVRTGVEVKDRKYRFKKYRQCFVGSEAVDFLVDNGYVASRFEAVELGEKMRAAGLFSHVVDDHGFKDDKLFYAF 215          
BLAST of mRNA_M-pyrifera_M_contig99053.22784.1 vs. uniprot
Match: A0A835W5K2_CHLIN (DEP domain-containing protein n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835W5K2_CHLIN)

HSP 1 Score: 82.4 bits (202), Expect = 2.900e-16
Identity = 40/81 (49.38%), Postives = 51/81 (62.96%), Query Frame = 1
Query:   37 DLCFLAESLAEGVDVRDRRYRLRSFASCFLGSDAVDWLMVHSDCTTRKEAVALGNKMQAAGLLSHVTNDHRFQDKPLFFRF 279
            DL  LA +L  GV ++DRRY  R + +CF+G +AV WL+         EAVALGN M  AGL  HV  +HRF+D  LF+RF
Sbjct:   23 DLLQLAAALRGGVRIKDRRYLFRCYRACFVGQEAVAWLVAAGAAAGPAEAVALGNSMMEAGLFHHVVYEHRFEDDYLFYRF 103          
BLAST of mRNA_M-pyrifera_M_contig99053.22784.1 vs. uniprot
Match: A0A2V3J6P8_9FLOR (Mercuric reductase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J6P8_9FLOR)

HSP 1 Score: 82.0 bits (201), Expect = 3.850e-16
Identity = 35/86 (40.70%), Postives = 56/86 (65.12%), Query Frame = 1
Query:   22 DEEMLDLCFLAESLAEGVDVRDRRYRLRSFASCFLGSDAVDWLMVHSDCTTRKEAVALGNKMQAAGLLSHVTNDHRFQDKPLFFRF 279
            D   LD+  LA +  + V ++DRR+RL+++  CF+GS+AV W++      TR +AV LG  MQ AG++ H   DH F+D+ L+++F
Sbjct:    8 DNSELDIVELASNFRKNVTIKDRRWRLQTYKDCFVGSEAVQWMVTSGTANTRADAVKLGLLMQEAGIIEHCVRDHDFKDQELYYKF 93          
BLAST of mRNA_M-pyrifera_M_contig99053.22784.1 vs. uniprot
Match: A0A845ZP23_9CYAN (DEP domain-containing protein n=1 Tax=Moorena sp. SIO3E2 TaxID=2607829 RepID=A0A845ZP23_9CYAN)

HSP 1 Score: 75.9 bits (185), Expect = 4.300e-16
Identity = 33/70 (47.14%), Postives = 52/70 (74.29%), Query Frame = 1
Query:   70 GVDVRDRRYRLRSFASCFLGSDAVDWLMVHSDCTTRKEAVALGNKMQAAGLLSHVTNDHRFQDKPLFFRF 279
            G++++DRRYRL S+  CF+GS+AVDWL+   + +TR++AV +G  +   G++ HV +DH F+D  LF+RF
Sbjct:   11 GLEIKDRRYRLNSYGCCFVGSEAVDWLVKRCN-STREDAVTVGQILINRGIIHHVADDHPFRDDYLFYRF 79          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig99053.22784.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3YNU9_9EUKA2.750e-1843.37Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]
UPI00194E7D011.710e-1745.83mechanosensitive ion channel n=1 Tax=Spirulina maj... [more]
A0A1L9QXS6_9CYAN3.180e-1750.68DEP domain-containing protein n=2 Tax=Cyanobacteri... [more]
A0A835WVW9_9CHLO8.360e-1750.62DEP domain-containing protein n=1 Tax=Chlamydomona... [more]
A0A846D5T9_9CYAN1.110e-1648.65Mechanosensitive ion channel n=1 Tax=Moorena sp. S... [more]
A0A401IDG7_APHSA2.050e-1644.09Potassium efflux system protein KefA n=1 Tax=Aphan... [more]
A0A0L0DTK9_THETB2.460e-1645.35Uncharacterized protein n=1 Tax=Thecamonas trahens... [more]
A0A835W5K2_CHLIN2.900e-1649.38DEP domain-containing protein n=1 Tax=Chlamydomona... [more]
A0A2V3J6P8_9FLOR3.850e-1640.70Mercuric reductase n=1 Tax=Gracilariopsis chorda T... [more]
A0A845ZP23_9CYAN4.300e-1647.14DEP domain-containing protein n=1 Tax=Moorena sp. ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig99053contigM-pyrifera_M_contig99053:203..493 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.4
Seed ortholog evalue1.1e-13
Seed eggNOG ortholog529818.AMSG_01930T0
Preferred nameIML1
KEGG koko:K20404
KEGG Pathwayko04150,map04150
Hectar predicted targeting categoryother localisation
GOsGO:0000306,GO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0003674,GO:0005096,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0006950,GO:0006995,GO:0007154,GO:0008047,GO:0008150,GO:0009267,GO:0009605,GO:0009893,GO:0009894,GO:0009896,GO:0009966,GO:0009968,GO:0009987,GO:0009991,GO:0010506,GO:0010508,GO:0010646,GO:0010648,GO:0016020,GO:0016241,GO:0019222,GO:0019898,GO:0023051,GO:0023057,GO:0030234,GO:0030695,GO:0031090,GO:0031312,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0031667,GO:0031668,GO:0031669,GO:0032006,GO:0032007,GO:0032991,GO:0033043,GO:0033554,GO:0034198,GO:0035859,GO:0042594,GO:0043085,GO:0043087,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043547,GO:0043562,GO:0044087,GO:0044088,GO:0044093,GO:0044422,GO:0044424,GO:0044425,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051056,GO:0051058,GO:0051128,GO:0051336,GO:0051345,GO:0051716,GO:0060589,GO:0065007,GO:0065009,GO:0071496,GO:0097042,GO:0098588,GO:0098772,GO:0098805,GO:0098852,GO:1902115,GO:1902531,GO:1902532,GO:1903432,GO:1904262,GO:1990130,GO:1990928,GO:2000785
EggNOG free text desc.negative regulation of TOR signaling
EggNOG OGsKOG3572@1,KOG3572@2759
Ec32 ortholog descriptionDEP domain
Ec32 orthologEc-28_000020.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Exons1
Model size291
Cds size261
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816907.2566895-UTR-M-pyrifera_M_contig99053:202..2321622816907.2566895-UTR-M-pyrifera_M_contig99053:202..232Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig99053 203..232 +
1692278248.509394-UTR-M-pyrifera_M_contig99053:202..2321692278248.509394-UTR-M-pyrifera_M_contig99053:202..232Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig99053 203..232 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816907.267966-CDS-M-pyrifera_M_contig99053:232..4931622816907.267966-CDS-M-pyrifera_M_contig99053:232..493Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99053 233..493 +
1692278248.520712-CDS-M-pyrifera_M_contig99053:232..4931692278248.520712-CDS-M-pyrifera_M_contig99053:232..493Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99053 233..493 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig99053.22784.1prot_M-pyrifera_M_contig99053.22784.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig99053 233..493 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig99053.22784.1

>prot_M-pyrifera_M_contig99053.22784.1 ID=prot_M-pyrifera_M_contig99053.22784.1|Name=mRNA_M-pyrifera_M_contig99053.22784.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=87bp
MLDLCFLAESLAEGVDVRDRRYRLRSFASCFLGSDAVDWLMVHSDCTTRK
EAVALGNKMQAAGLLSHVTNDHRFQDKPLFFRFKAVG
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mRNA from alignment at M-pyrifera_M_contig99053:203..493+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig99053.22784.1 ID=mRNA_M-pyrifera_M_contig99053.22784.1|Name=mRNA_M-pyrifera_M_contig99053.22784.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=291bp|location=Sequence derived from alignment at M-pyrifera_M_contig99053:203..493+ (Macrocystis pyrifera P11B4 male)
ATTGAAGACGAGATCCAGCAAGATGAAGAGATGCTGGACTTGTGCTTTTT AGCTGAGTCTCTGGCCGAGGGTGTGGATGTGCGCGACCGCCGCTACCGCC TACGCTCTTTTGCCAGTTGCTTCCTCGGCAGCGACGCCGTGGATTGGCTC ATGGTGCACTCAGACTGCACCACGCGAAAGGAGGCGGTGGCGCTCGGCAA CAAAATGCAGGCAGCTGGCCTCCTCTCCCACGTCACCAACGACCACCGCT TCCAAGACAAGCCACTCTTCTTCCGTTTCAAGGCTGTGGGT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig99053:203..493+

>mRNA_M-pyrifera_M_contig99053.22784.1 ID=mRNA_M-pyrifera_M_contig99053.22784.1|Name=mRNA_M-pyrifera_M_contig99053.22784.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=522bp|location=Sequence derived from alignment at M-pyrifera_M_contig99053:203..493+ (Macrocystis pyrifera P11B4 male)
ATGCTGGACTTGTGCTTTTTAGCTGAGTCTCTGGCCGAGGGTGTGGATGT
GCGCGACCGCCGCTACCGCCTACGCTCTTTTGCCAGTTGCTTCCTCGGCA
GCGACGCCGTGGATTGGCTCATGGTGCACTCAGACTGCACCACGCGAAAG
GAGGCGGTGGCGCTCGGCAACAAAATGCAGGCAGCTGGCCTCCTCTCCCA
CGTCACCAACGACCACCGCTTCCAAGACAAGCCACTCTTCTTCCGTTTCA
AGGCTGTGGGTATGCTGGACTTGTGCTTTTTAGCTGAGTCTCTGGCCGAG
GGTGTGGATGTGCGCGACCGCCGCTACCGCCTACGCTCTTTTGCCAGTTG
CTTCCTCGGCAGCGACGCCGTGGATTGGCTCATGGTGCACTCAGACTGCA
CCACGCGAAAGGAGGCGGTGGCGCTCGGCAACAAAATGCAGGCAGCTGGC
CTCCTCTCCCACGTCACCAACGACCACCGCTTCCAAGACAAGCCACTCTT
CTTCCGTTTCAAGGCTGTGGGT
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