mRNA_M-pyrifera_M_contig99051.22782.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig99051.22782.1
Unique NamemRNA_M-pyrifera_M_contig99051.22782.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig99051.22782.1 vs. uniprot
Match: A0A349B763_9ACTN (Fructose-1,6-bisphosphatase n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A349B763_9ACTN)

HSP 1 Score: 99.8 bits (247), Expect = 1.980e-23
Identity = 48/74 (64.86%), Postives = 61/74 (82.43%), Query Frame = 1
Query:    1 EGGYDLDAVLTMNDLVRTDNCFFAATGISTGALLKGVTFDGEHITTQSLVVRSRSGTVRIIDAQHSIHKLSAIA 222
            + GYDLD VLT +DL+R+DNCFFAATGI+ G LL+GV +D    +TQSLV+RS+SGTVR+I+AQH I KL+A A
Sbjct:  252 DAGYDLDRVLTEDDLIRSDNCFFAATGITDGELLRGVHYDNRGASTQSLVMRSKSGTVRLIEAQHKIDKLAAYA 325          
BLAST of mRNA_M-pyrifera_M_contig99051.22782.1 vs. uniprot
Match: A0A542X926_9MICO (Fructose-1,6-bisphosphatase n=1 Tax=Barrientosiimonas humi TaxID=999931 RepID=A0A542X926_9MICO)

HSP 1 Score: 98.6 bits (244), Expect = 5.960e-23
Identity = 48/76 (63.16%), Postives = 60/76 (78.95%), Query Frame = 1
Query:    1 EGGYDLDAVLTMNDLVRTDNCFFAATGISTGALLKGVTFDGEHITTQSLVVRSRSGTVRIIDAQHSIHKLSAIAGP 228
            + G+DL+ VL+ +DLVR DNCFF ATGI+ G LLKGV +    ITTQSLV+RSRSGT+R+I+AQH I KL+  AGP
Sbjct:  257 DAGHDLERVLSTDDLVRGDNCFFVATGITDGELLKGVRYRSGGITTQSLVMRSRSGTIRLIEAQHQIEKLAGYAGP 332          
BLAST of mRNA_M-pyrifera_M_contig99051.22782.1 vs. uniprot
Match: A0A6J6YCU7_9ZZZZ (Unannotated protein n=1 Tax=freshwater metagenome TaxID=449393 RepID=A0A6J6YCU7_9ZZZZ)

HSP 1 Score: 92.8 bits (229), Expect = 1.140e-22
Identity = 47/72 (65.28%), Postives = 55/72 (76.39%), Query Frame = 1
Query:    7 GYDLDAVLTMNDLVRTDNCFFAATGISTGALLKGVTFDGEHITTQSLVVRSRSGTVRIIDAQHSIHKLSAIA 222
            GYDLD VLT +DLV+ DNCFFAATGI+ G LL+GV +D     TQSLV+RSRSGT R+IDA+H I KL   A
Sbjct:   44 GYDLDRVLTTHDLVQGDNCFFAATGITDGELLRGVRYDRGGARTQSLVMRSRSGTTRLIDARHRIDKLKTFA 115          
BLAST of mRNA_M-pyrifera_M_contig99051.22782.1 vs. uniprot
Match: UPI002002F355 (class II fructose-bisphosphatase n=1 Tax=Aciditerrimonas ferrireducens TaxID=667306 RepID=UPI002002F355)

HSP 1 Score: 97.4 bits (241), Expect = 1.270e-22
Identity = 48/68 (70.59%), Postives = 57/68 (83.82%), Query Frame = 1
Query:    7 GYDLDAVLTMNDLVRTDNCFFAATGISTGALLKGVTFDGEHITTQSLVVRSRSGTVRIIDAQHSIHKL 210
            GYDLDA+LT +DLVR DNCFFAATGI+ G LL+GV +     TTQSLV+RSRSGTVR+I A+HS+HKL
Sbjct:  242 GYDLDAILTTDDLVRGDNCFFAATGITDGELLQGVRYHDFGATTQSLVMRSRSGTVRLISARHSLHKL 309          
BLAST of mRNA_M-pyrifera_M_contig99051.22782.1 vs. uniprot
Match: A0A7K0VIP6_9ACTN (Fructose-1,6-bisphosphatase class 2 n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7K0VIP6_9ACTN)

HSP 1 Score: 92.8 bits (229), Expect = 2.820e-22
Identity = 47/72 (65.28%), Postives = 55/72 (76.39%), Query Frame = 1
Query:    7 GYDLDAVLTMNDLVRTDNCFFAATGISTGALLKGVTFDGEHITTQSLVVRSRSGTVRIIDAQHSIHKLSAIA 222
            GYDLD VLT +DLV+ DNCFFAATGI+ G LL+GV +D     TQSLV+RSRSGT R+IDA+H I KL   A
Sbjct:   78 GYDLDRVLTTHDLVQGDNCFFAATGITDGELLRGVRYDRGGARTQSLVMRSRSGTTRLIDARHRIDKLKTFA 149          
BLAST of mRNA_M-pyrifera_M_contig99051.22782.1 vs. uniprot
Match: A0A6I3WMU0_9ACTN (Fructose-1,6-bisphosphatase n=2 Tax=root TaxID=1 RepID=A0A6I3WMU0_9ACTN)

HSP 1 Score: 96.7 bits (239), Expect = 2.890e-22
Identity = 48/74 (64.86%), Postives = 58/74 (78.38%), Query Frame = 1
Query:    1 EGGYDLDAVLTMNDLVRTDNCFFAATGISTGALLKGVTFDGEHITTQSLVVRSRSGTVRIIDAQHSIHKLSAIA 222
            + GYDLD VLT +DLV+ DNCFFAATGI+ G LL+GV +DG    TQSLV+RSRSGT+R+IDA+H I KL   A
Sbjct:  251 DAGYDLDRVLTKDDLVQGDNCFFAATGITDGELLRGVRYDGGGARTQSLVMRSRSGTMRLIDARHRIDKLRTFA 324          
BLAST of mRNA_M-pyrifera_M_contig99051.22782.1 vs. uniprot
Match: A0A662DRH3_9ACTN (Fructose-1,6-bisphosphatase n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A662DRH3_9ACTN)

HSP 1 Score: 95.9 bits (237), Expect = 5.780e-22
Identity = 45/74 (60.81%), Postives = 57/74 (77.03%), Query Frame = 1
Query:    1 EGGYDLDAVLTMNDLVRTDNCFFAATGISTGALLKGVTFDGEHITTQSLVVRSRSGTVRIIDAQHSIHKLSAIA 222
            EGGYDLD V   +DL+ +DNCFFAATG++ GALL+GV  D   + TQSLV+RSRSGTVR+ID++H + KL   A
Sbjct:  254 EGGYDLDRVFGQDDLIESDNCFFAATGLTDGALLRGVRIDSRGVRTQSLVMRSRSGTVRMIDSRHQVSKLREFA 327          
BLAST of mRNA_M-pyrifera_M_contig99051.22782.1 vs. uniprot
Match: A0A4Y9F9C7_9MICC (Fructose-1,6-bisphosphatase n=12 Tax=Terrabacteria group TaxID=1783272 RepID=A0A4Y9F9C7_9MICC)

HSP 1 Score: 95.9 bits (237), Expect = 5.780e-22
Identity = 48/78 (61.54%), Postives = 64/78 (82.05%), Query Frame = 1
Query:    1 EGGYDLDAVLTMNDLVRTDNCFFAATGISTGALLKGVTFDGEHITTQSLVVRSRSGTVRIIDAQHSIHKLSA-IAGPL 231
            + G+DLDAVLT ++LV TDNCFFAATGI+ G LL+GV +  + +TTQSLV+RS+SGTVR+I+A+H + + SA IAG L
Sbjct:  252 DAGHDLDAVLTTDELVTTDNCFFAATGITDGKLLRGVRYGRDTVTTQSLVMRSKSGTVRLIEAEHKLSRYSAMIAGTL 329          
BLAST of mRNA_M-pyrifera_M_contig99051.22782.1 vs. uniprot
Match: A0A7Y2EV85_9ACTN (Fructose-1,6-bisphosphatase n=1 Tax=Ilumatobacter sp. TaxID=1967498 RepID=A0A7Y2EV85_9ACTN)

HSP 1 Score: 95.1 bits (235), Expect = 1.110e-21
Identity = 46/74 (62.16%), Postives = 57/74 (77.03%), Query Frame = 1
Query:    1 EGGYDLDAVLTMNDLVRTDNCFFAATGISTGALLKGVTFDGEHITTQSLVVRSRSGTVRIIDAQHSIHKLSAIA 222
            + GYDLD +L  NDL++ DNCFFAATG++ GALL+GV FD     TQSLV+RSRSGTVR+IDA+H + KL   A
Sbjct:  253 DAGYDLDQILDQNDLIKGDNCFFAATGLTDGALLRGVRFDTAGARTQSLVMRSRSGTVRMIDARHRMKKLREFA 326          
BLAST of mRNA_M-pyrifera_M_contig99051.22782.1 vs. uniprot
Match: A0A538F9N5_9ACTN (Fructose-1,6-bisphosphatase n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538F9N5_9ACTN)

HSP 1 Score: 94.7 bits (234), Expect = 1.570e-21
Identity = 44/68 (64.71%), Postives = 58/68 (85.29%), Query Frame = 1
Query:    7 GYDLDAVLTMNDLVRTDNCFFAATGISTGALLKGVTFDGEHITTQSLVVRSRSGTVRIIDAQHSIHKL 210
            GYD+DAVL ++DL+++DNCFFAATG++ G LL+GV FDG   TTQSLV+RS+SGTVR I+A+H + KL
Sbjct:  255 GYDIDAVLGIDDLIKSDNCFFAATGVTDGELLRGVHFDGRGATTQSLVMRSKSGTVRRIEARHRLEKL 322          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig99051.22782.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A349B763_9ACTN1.980e-2364.86Fructose-1,6-bisphosphatase n=1 Tax=Acidimicrobiac... [more]
A0A542X926_9MICO5.960e-2363.16Fructose-1,6-bisphosphatase n=1 Tax=Barrientosiimo... [more]
A0A6J6YCU7_9ZZZZ1.140e-2265.28Unannotated protein n=1 Tax=freshwater metagenome ... [more]
UPI002002F3551.270e-2270.59class II fructose-bisphosphatase n=1 Tax=Aciditerr... [more]
A0A7K0VIP6_9ACTN2.820e-2265.28Fructose-1,6-bisphosphatase class 2 n=1 Tax=Actino... [more]
A0A6I3WMU0_9ACTN2.890e-2264.86Fructose-1,6-bisphosphatase n=2 Tax=root TaxID=1 R... [more]
A0A662DRH3_9ACTN5.780e-2260.81Fructose-1,6-bisphosphatase n=1 Tax=Actinomycetia ... [more]
A0A4Y9F9C7_9MICC5.780e-2261.54Fructose-1,6-bisphosphatase n=12 Tax=Terrabacteria... [more]
A0A7Y2EV85_9ACTN1.110e-2162.16Fructose-1,6-bisphosphatase n=1 Tax=Ilumatobacter ... [more]
A0A538F9N5_9ACTN1.570e-2164.71Fructose-1,6-bisphosphatase n=1 Tax=Actinomycetia ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig99051contigM-pyrifera_M_contig99051:6..239 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score96.3
Seed ortholog evalue6.8e-18
Seed eggNOG ortholog1305732.JAGG01000001_gene1167
Preferred nameglpX
KEGG rclassRC00017
KEGG koko:K02446,ko:K11532
KEGG ReactionR00762,R01845,R04780
KEGG Pathwayko00010,ko00030,ko00051,ko00680,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00030,map00051,map00680,map00710,map01100,map01110,map01120,map01130,map01200
KEGG ModuleM00003,M00165,M00167
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Bacterial fructose-1,6-bisphosphatase, glpX-encoded
EggNOG OGs2GMQU@201174,4FKDT@85023,COG1494@1,COG1494@2
EC3.1.3.11,3.1.3.37
COG Functional cat.G
Best tax levelMicrobacteriaceae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size234
Cds size234
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816907.1789207-CDS-M-pyrifera_M_contig99051:5..2391622816907.1789207-CDS-M-pyrifera_M_contig99051:5..239Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99051 6..239 +
1692278248.4790478-CDS-M-pyrifera_M_contig99051:5..2391692278248.4790478-CDS-M-pyrifera_M_contig99051:5..239Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99051 6..239 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig99051.22782.1prot_M-pyrifera_M_contig99051.22782.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig99051 6..239 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig99051.22782.1

>prot_M-pyrifera_M_contig99051.22782.1 ID=prot_M-pyrifera_M_contig99051.22782.1|Name=mRNA_M-pyrifera_M_contig99051.22782.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=78bp
EGGYDLDAVLTMNDLVRTDNCFFAATGISTGALLKGVTFDGEHITTQSLV
VRSRSGTVRIIDAQHSIHKLSAIAGPL*
back to top

mRNA from alignment at M-pyrifera_M_contig99051:6..239+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig99051.22782.1 ID=mRNA_M-pyrifera_M_contig99051.22782.1|Name=mRNA_M-pyrifera_M_contig99051.22782.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=234bp|location=Sequence derived from alignment at M-pyrifera_M_contig99051:6..239+ (Macrocystis pyrifera P11B4 male)
GAGGGAGGCTACGACCTCGATGCGGTGCTCACGATGAACGATCTCGTTCG TACCGACAACTGCTTCTTCGCCGCCACCGGCATCAGCACCGGCGCCCTGC TCAAGGGCGTGACCTTCGACGGGGAACACATCACGACCCAGTCGCTCGTC GTCCGGTCCCGCTCGGGCACGGTCCGGATCATCGACGCCCAGCACTCGAT CCACAAGCTCTCCGCCATCGCCGGCCCCCTCTGA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig99051:6..239+

>mRNA_M-pyrifera_M_contig99051.22782.1 ID=mRNA_M-pyrifera_M_contig99051.22782.1|Name=mRNA_M-pyrifera_M_contig99051.22782.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=468bp|location=Sequence derived from alignment at M-pyrifera_M_contig99051:6..239+ (Macrocystis pyrifera P11B4 male)
GAGGGAGGCTACGACCTCGATGCGGTGCTCACGATGAACGATCTCGTTCG
TACCGACAACTGCTTCTTCGCCGCCACCGGCATCAGCACCGGCGCCCTGC
TCAAGGGCGTGACCTTCGACGGGGAACACATCACGACCCAGTCGCTCGTC
GTCCGGTCCCGCTCGGGCACGGTCCGGATCATCGACGCCCAGCACTCGAT
CCACAAGCTCTCCGCCATCGCCGGCCCCCTCTGAGAGGGAGGCTACGACC
TCGATGCGGTGCTCACGATGAACGATCTCGTTCGTACCGACAACTGCTTC
TTCGCCGCCACCGGCATCAGCACCGGCGCCCTGCTCAAGGGCGTGACCTT
CGACGGGGAACACATCACGACCCAGTCGCTCGTCGTCCGGTCCCGCTCGG
GCACGGTCCGGATCATCGACGCCCAGCACTCGATCCACAAGCTCTCCGCC
ATCGCCGGCCCCCTCTGA
back to top