mRNA_M-pyrifera_M_contig99037.22780.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig99037.22780.1
Unique NamemRNA_M-pyrifera_M_contig99037.22780.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig99037.22780.1 vs. uniprot
Match: D8LTR5_ECTSI (Arf-GAP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTR5_ECTSI)

HSP 1 Score: 85.5 bits (210), Expect = 3.220e-18
Identity = 35/45 (77.78%), Postives = 43/45 (95.56%), Query Frame = 1 
Query:    4 QVRSRWA-RADGSPSWSEKLMLCWDGSMPLNIDMYGGKEHIGQVR 135
            +VRS+W+ R+DGSPSWSEKLMLCWDG+MPLNID+YGGK+HIGQ +
Sbjct:  344 EVRSKWSKRSDGSPSWSEKLMLCWDGNMPLNIDIYGGKDHIGQAQ 388
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BLAST of mRNA_M-pyrifera_M_contig99037.22780.1 vs. uniprot
Match: A0A6H5L6N3_9PHAE (Arf-GAP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6N3_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 8.200e-18
Identity = 34/45 (75.56%), Postives = 43/45 (95.56%), Query Frame = 1 
Query:    4 QVRSRWAR-ADGSPSWSEKLMLCWDGSMPLNIDMYGGKEHIGQVR 135
            +VRS+W++ +DGSPSWSEKLMLCWDG+MPLNID+YGGK+HIGQ +
Sbjct:  374 EVRSKWSKKSDGSPSWSEKLMLCWDGNMPLNIDVYGGKDHIGQAQ 418
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig99037.22780.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LTR5_ECTSI3.220e-1877.78Arf-GAP domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5L6N3_9PHAE8.200e-1875.56Arf-GAP domain-containing protein n=1 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig99037contigM-pyrifera_M_contig99037:85..231 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.5
Seed ortholog evalue7.5e-15
Seed eggNOG ortholog2880.D8LTR5
KEGG koko:K12486
KEGG Pathwayko04144,map04144
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.GTPase activator activity
EggNOG OGsCOG5347@1,KOG0703@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Exons1
Model size147
Cds size147
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816907.1158566-CDS-M-pyrifera_M_contig99037:84..2311622816907.1158566-CDS-M-pyrifera_M_contig99037:84..231Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99037 85..231 +
1692278248.4394708-CDS-M-pyrifera_M_contig99037:84..2311692278248.4394708-CDS-M-pyrifera_M_contig99037:84..231Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99037 85..231 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig99037.22780.1prot_M-pyrifera_M_contig99037.22780.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig99037 85..231 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig99037.22780.1

>prot_M-pyrifera_M_contig99037.22780.1 ID=prot_M-pyrifera_M_contig99037.22780.1|Name=mRNA_M-pyrifera_M_contig99037.22780.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=49bp
MQVRSRWARADGSPSWSEKLMLCWDGSMPLNIDMYGGKEHIGQVRGGL*
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mRNA from alignment at M-pyrifera_M_contig99037:85..231+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig99037.22780.1 ID=mRNA_M-pyrifera_M_contig99037.22780.1|Name=mRNA_M-pyrifera_M_contig99037.22780.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=147bp|location=Sequence derived from alignment at M-pyrifera_M_contig99037:85..231+ (Macrocystis pyrifera P11B4 male)
ATGCAGGTGCGGTCAAGGTGGGCTAGGGCTGACGGTTCGCCTTCGTGGTC
GGAGAAGCTGATGCTGTGCTGGGACGGGAGCATGCCGCTCAACATCGACA
TGTACGGCGGGAAGGAGCACATCGGTCAGGTACGCGGCGGCCTTTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig99037:85..231+

>mRNA_M-pyrifera_M_contig99037.22780.1 ID=mRNA_M-pyrifera_M_contig99037.22780.1|Name=mRNA_M-pyrifera_M_contig99037.22780.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=294bp|location=Sequence derived from alignment at M-pyrifera_M_contig99037:85..231+ (Macrocystis pyrifera P11B4 male)
ATGCAGGTGCGGTCAAGGTGGGCTAGGGCTGACGGTTCGCCTTCGTGGTC
GGAGAAGCTGATGCTGTGCTGGGACGGGAGCATGCCGCTCAACATCGACA
TGTACGGCGGGAAGGAGCACATCGGTCAGGTACGCGGCGGCCTTTGAATG
CAGGTGCGGTCAAGGTGGGCTAGGGCTGACGGTTCGCCTTCGTGGTCGGA
GAAGCTGATGCTGTGCTGGGACGGGAGCATGCCGCTCAACATCGACATGT
ACGGCGGGAAGGAGCACATCGGTCAGGTACGCGGCGGCCTTTGA
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