mRNA_M-pyrifera_M_contig99032.22779.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig99032.22779.1
Unique NamemRNA_M-pyrifera_M_contig99032.22779.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig99032.22779.1 vs. uniprot
Match: D7FR93_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR93_ECTSI)

HSP 1 Score: 187 bits (475), Expect = 9.410e-60
Identity = 96/105 (91.43%), Postives = 96/105 (91.43%), Query Frame = 1
Query:    4 MMLAGMGLLNTMPMLATLTVEKGLLAALGEVLQVFLSGGPMYFMFHIQTRAHYFYQTLLAGGAHYRATGRGFVTHHSCFDDLYRFFANSHFYLGFEVEFFERRGT 318
            MMLAGMGLLNTMPMLATLTVEKGLL ALGEVLQVFLSGGPMYFMFHIQTRAHYFYQTLLAGGA YRATGRGFVTHHSCFDDLYRFFANSHFYLGFE     R  T
Sbjct:    2 MMLAGMGLLNTMPMLATLTVEKGLLVALGEVLQVFLSGGPMYFMFHIQTRAHYFYQTLLAGGAQYRATGRGFVTHHSCFDDLYRFFANSHFYLGFEGSVTGRTNT 106          
BLAST of mRNA_M-pyrifera_M_contig99032.22779.1 vs. uniprot
Match: A0A6H5JFR3_9PHAE (1,3-beta-glucan synthase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFR3_9PHAE)

HSP 1 Score: 187 bits (476), Expect = 4.790e-53
Identity = 94/97 (96.91%), Postives = 95/97 (97.94%), Query Frame = 1
Query:    4 MMLAGMGLLNTMPMLATLTVEKGLLAALGEVLQVFLSGGPMYFMFHIQTRAHYFYQTLLAGGAHYRATGRGFVTHHSCFDDLYRFFANSHFYLGFEV 294
            MMLAGMGLLNTMPMLATLTVEKGLL ALGEVLQVFLSGGPMYFMFHIQTRAHYFYQTLLAGGA YRATGRGFVTHHSCFDDLYRFFANSHFYLGFE+
Sbjct: 1738 MMLAGMGLLNTMPMLATLTVEKGLLVALGEVLQVFLSGGPMYFMFHIQTRAHYFYQTLLAGGAQYRATGRGFVTHHSCFDDLYRFFANSHFYLGFEL 1834          
BLAST of mRNA_M-pyrifera_M_contig99032.22779.1 vs. uniprot
Match: A0A835Z1S2_9STRA (1,3-beta-glucan synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1S2_9STRA)

HSP 1 Score: 167 bits (424), Expect = 4.880e-46
Identity = 86/98 (87.76%), Postives = 90/98 (91.84%), Query Frame = 1
Query:    1 QMMLAGMGLLNTMPMLATLTVEKGLLAALGEVLQVFLSGGPMYFMFHIQTRAHYFYQTLLAGGAHYRATGRGFVTHHSCFDDLYRFFANSHFYLGFEV 294
            QMMLAGMG+LNT+PMLATL VEKGL AAL  V QVF+SGGPMYFMFHIQTRAHYFYQTLLAGGA YRATGRGFVTHHS FDDLYRFFA SHFYLGFE+
Sbjct: 1823 QMMLAGMGVLNTLPMLATLMVEKGLRAALVVVGQVFVSGGPMYFMFHIQTRAHYFYQTLLAGGAQYRATGRGFVTHHSTFDDLYRFFATSHFYLGFEL 1920          
BLAST of mRNA_M-pyrifera_M_contig99032.22779.1 vs. uniprot
Match: A0A835Z4B5_9STRA (1,3-beta-glucan synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4B5_9STRA)

HSP 1 Score: 166 bits (421), Expect = 1.230e-45
Identity = 85/98 (86.73%), Postives = 90/98 (91.84%), Query Frame = 1
Query:    1 QMMLAGMGLLNTMPMLATLTVEKGLLAALGEVLQVFLSGGPMYFMFHIQTRAHYFYQTLLAGGAHYRATGRGFVTHHSCFDDLYRFFANSHFYLGFEV 294
            QM+LAGMG+LNT+PMLATL VEKGL AAL  V QVF+SGGPMYFMFHIQTRAHYFYQTLLAGGA YRATGRGFVTHHS FDDLYRFFA SHFYLGFE+
Sbjct: 1424 QMLLAGMGVLNTLPMLATLMVEKGLRAALITVGQVFVSGGPMYFMFHIQTRAHYFYQTLLAGGAQYRATGRGFVTHHSSFDDLYRFFATSHFYLGFEL 1521          
BLAST of mRNA_M-pyrifera_M_contig99032.22779.1 vs. uniprot
Match: A0A8J2T241_9STRA (1,3-beta-glucan synthase n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2T241_9STRA)

HSP 1 Score: 144 bits (363), Expect = 8.170e-38
Identity = 73/98 (74.49%), Postives = 85/98 (86.73%), Query Frame = 1
Query:    1 QMMLAGMGLLNTMPMLATLTVEKGLLAALGEVLQVFLSGGPMYFMFHIQTRAHYFYQTLLAGGAHYRATGRGFVTHHSCFDDLYRFFANSHFYLGFEV 294
            Q++LAG+GLLNT+P+LATL VE+GLLAA  +V QVF SGGP+YF+FHIQTRAHYF QTLLAGGA YRATGRGFVT H+ FD+ YRFFA SH YLG E+
Sbjct: 1803 QVVLAGLGLLNTLPLLATLAVERGLLAATRDVAQVFASGGPLYFVFHIQTRAHYFMQTLLAGGATYRATGRGFVTTHNSFDEQYRFFAASHLYLGVEL 1900          
BLAST of mRNA_M-pyrifera_M_contig99032.22779.1 vs. uniprot
Match: F0YA81_AURAN (1,3-beta-glucan synthase n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YA81_AURAN)

HSP 1 Score: 141 bits (355), Expect = 9.810e-37
Identity = 71/98 (72.45%), Postives = 84/98 (85.71%), Query Frame = 1
Query:    1 QMMLAGMGLLNTMPMLATLTVEKGLLAALGEVLQVFLSGGPMYFMFHIQTRAHYFYQTLLAGGAHYRATGRGFVTHHSCFDDLYRFFANSHFYLGFEV 294
            Q++LAG+GLLNT+P+LATL VE+GL AA  +V QVF SGGP+YF+FHIQTRAHYF QT+LAGGA YRATGRGFVT HS FD+ YRFFA SH +LG E+
Sbjct: 1899 QILLAGLGLLNTLPLLATLAVERGLWAAAKDVAQVFASGGPLYFIFHIQTRAHYFTQTILAGGATYRATGRGFVTRHSTFDEQYRFFAASHLHLGVEL 1996          
BLAST of mRNA_M-pyrifera_M_contig99032.22779.1 vs. uniprot
Match: A0A7S2UV62_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UV62_9STRA)

HSP 1 Score: 140 bits (354), Expect = 1.330e-36
Identity = 69/98 (70.41%), Postives = 83/98 (84.69%), Query Frame = 1
Query:    1 QMMLAGMGLLNTMPMLATLTVEKGLLAALGEVLQVFLSGGPMYFMFHIQTRAHYFYQTLLAGGAHYRATGRGFVTHHSCFDDLYRFFANSHFYLGFEV 294
            QM L GMG+L T+PM +TL VEKG+ +A+G VLQVF SGGP+YFMFHIQT+++YF QTLLAG A YR TGRGFVT HS FD+ +RFFA+SHFYLGFE+
Sbjct: 1201 QMCLGGMGILQTVPMFSTLAVEKGVASAVGTVLQVFFSGGPLYFMFHIQTKSYYFIQTLLAGNAKYRPTGRGFVTRHSSFDENFRFFASSHFYLGFEL 1298          
BLAST of mRNA_M-pyrifera_M_contig99032.22779.1 vs. uniprot
Match: A0A7S3H8Z7_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H8Z7_9STRA)

HSP 1 Score: 133 bits (335), Expect = 4.750e-34
Identity = 64/98 (65.31%), Postives = 84/98 (85.71%), Query Frame = 1
Query:    1 QMMLAGMGLLNTMPMLATLTVEKGLLAALGEVLQVFLSGGPMYFMFHIQTRAHYFYQTLLAGGAHYRATGRGFVTHHSCFDDLYRFFANSHFYLGFEV 294
            Q++L+GMG+L TMP+L TLTVEKG+LAA+ E+  + LSGGP+YF+FHI+T+++YF QTL+AGGA YR TGR FVT HS FD+ +RFFA+SH YLGFE+
Sbjct:  261 QLLLSGMGILQTMPLLITLTVEKGVLAAISEIGFMILSGGPLYFIFHIETKSYYFSQTLMAGGAKYRPTGRAFVTSHSSFDENFRFFASSHIYLGFEI 358          
BLAST of mRNA_M-pyrifera_M_contig99032.22779.1 vs. uniprot
Match: A0A7S2QVX6_9STRA (1,3-beta-glucan synthase (Fragment) n=1 Tax=Triparma pacifica TaxID=91992 RepID=A0A7S2QVX6_9STRA)

HSP 1 Score: 131 bits (330), Expect = 2.300e-33
Identity = 64/98 (65.31%), Postives = 82/98 (83.67%), Query Frame = 1
Query:    1 QMMLAGMGLLNTMPMLATLTVEKGLLAALGEVLQVFLSGGPMYFMFHIQTRAHYFYQTLLAGGAHYRATGRGFVTHHSCFDDLYRFFANSHFYLGFEV 294
            QM+L GMGL+NT+P+ ATL VE+G  A++ E+ QVF++GGP++FMFHIQT+AHYF QT+L GGA YRATGRGFVT HS F + +RFFA+SH YLG E+
Sbjct: 1647 QMLLGGMGLMNTIPLFATLGVERGWWASMMEIFQVFVTGGPLHFMFHIQTKAHYFAQTILVGGAKYRATGRGFVTQHSPFAENFRFFASSHLYLGVEL 1744          
BLAST of mRNA_M-pyrifera_M_contig99032.22779.1 vs. uniprot
Match: A0A7S0GHQ8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GHQ8_9STRA)

HSP 1 Score: 128 bits (322), Expect = 5.220e-33
Identity = 61/98 (62.24%), Postives = 81/98 (82.65%), Query Frame = 1
Query:    1 QMMLAGMGLLNTMPMLATLTVEKGLLAALGEVLQVFLSGGPMYFMFHIQTRAHYFYQTLLAGGAHYRATGRGFVTHHSCFDDLYRFFANSHFYLGFEV 294
            QM+L G+GLL T+P++ATL VE+G LAA+ ++  VF++GGP++FMFHIQT+AHY  QT+L GGA YR TGRGFVT H+  D+ +RFFA+SH YLGFE+
Sbjct:  216 QMLLGGLGLLQTIPLIATLGVERGWLAAVQDIFSVFVTGGPLHFMFHIQTKAHYMAQTILVGGAKYRPTGRGFVTQHTPMDEQFRFFASSHLYLGFEL 313          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig99032.22779.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FR93_ECTSI9.410e-6091.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JFR3_9PHAE4.790e-5396.911,3-beta-glucan synthase n=1 Tax=Ectocarpus sp. CC... [more]
A0A835Z1S2_9STRA4.880e-4687.761,3-beta-glucan synthase n=1 Tax=Tribonema minus T... [more]
A0A835Z4B5_9STRA1.230e-4586.731,3-beta-glucan synthase n=1 Tax=Tribonema minus T... [more]
A0A8J2T241_9STRA8.170e-3874.491,3-beta-glucan synthase n=1 Tax=Pelagomonas calce... [more]
F0YA81_AURAN9.810e-3772.451,3-beta-glucan synthase n=1 Tax=Aureococcus anoph... [more]
A0A7S2UV62_9STRA1.330e-3670.41Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3H8Z7_9STRA4.750e-3465.31Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S2QVX6_9STRA2.300e-3365.311,3-beta-glucan synthase (Fragment) n=1 Tax=Tripar... [more]
A0A7S0GHQ8_9STRA5.220e-3362.24Hypothetical protein (Fragment) n=1 Tax=Proboscia ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig99032contigM-pyrifera_M_contig99032:107..427 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score188.3
Seed ortholog evalue1.8e-45
Seed eggNOG ortholog2880.D7FR93
KEGG koko:K11000
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.1,3-beta-D-glucan synthase activity
EggNOG OGsKOG0916@1,KOG0916@2759
Ec32 ortholog descriptionGlycosyl transferase, family 48
Ec32 orthologEc-08_004910.1
COG Functional cat.S
CAZyGT48
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01003
Exons1
Model size321
Cds size318
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816907.0729165-CDS-M-pyrifera_M_contig99032:106..4241622816907.0729165-CDS-M-pyrifera_M_contig99032:106..424Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99032 107..424 -
1692278248.405072-CDS-M-pyrifera_M_contig99032:106..4241692278248.405072-CDS-M-pyrifera_M_contig99032:106..424Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99032 107..424 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816907.085478-UTR-M-pyrifera_M_contig99032:424..4271622816907.085478-UTR-M-pyrifera_M_contig99032:424..427Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig99032 425..427 -
1692278248.419073-UTR-M-pyrifera_M_contig99032:424..4271692278248.419073-UTR-M-pyrifera_M_contig99032:424..427Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig99032 425..427 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig99032.22779.1prot_M-pyrifera_M_contig99032.22779.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig99032 107..424 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig99032.22779.1

>prot_M-pyrifera_M_contig99032.22779.1 ID=prot_M-pyrifera_M_contig99032.22779.1|Name=mRNA_M-pyrifera_M_contig99032.22779.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=106bp
MMLAGMGLLNTMPMLATLTVEKGLLAALGEVLQVFLSGGPMYFMFHIQTR
AHYFYQTLLAGGAHYRATGRGFVTHHSCFDDLYRFFANSHFYLGFEVEFF
ERRGT*
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mRNA from alignment at M-pyrifera_M_contig99032:107..427-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig99032.22779.1 ID=mRNA_M-pyrifera_M_contig99032.22779.1|Name=mRNA_M-pyrifera_M_contig99032.22779.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=321bp|location=Sequence derived from alignment at M-pyrifera_M_contig99032:107..427- (Macrocystis pyrifera P11B4 male)
CAGATGATGCTGGCGGGCATGGGTCTCCTCAACACGATGCCCATGCTGGC CACCCTCACGGTGGAGAAGGGTCTGCTAGCCGCCCTGGGCGAGGTGCTGC AGGTGTTCCTCAGCGGCGGGCCCATGTACTTCATGTTCCACATCCAGACG CGCGCCCACTACTTCTACCAGACGCTGCTGGCGGGGGGCGCTCATTACCG CGCGACGGGGAGGGGCTTCGTGACTCACCACTCTTGCTTCGACGACCTGT ACCGCTTCTTCGCCAACTCGCATTTCTACCTGGGCTTCGAGGTAGAATTT TTTGAAAGAAGGGGGACATAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig99032:107..427-

>mRNA_M-pyrifera_M_contig99032.22779.1 ID=mRNA_M-pyrifera_M_contig99032.22779.1|Name=mRNA_M-pyrifera_M_contig99032.22779.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=636bp|location=Sequence derived from alignment at M-pyrifera_M_contig99032:107..427- (Macrocystis pyrifera P11B4 male)
ATGATGCTGGCGGGCATGGGTCTCCTCAACACGATGCCCATGCTGGCCAC
CCTCACGGTGGAGAAGGGTCTGCTAGCCGCCCTGGGCGAGGTGCTGCAGG
TGTTCCTCAGCGGCGGGCCCATGTACTTCATGTTCCACATCCAGACGCGC
GCCCACTACTTCTACCAGACGCTGCTGGCGGGGGGCGCTCATTACCGCGC
GACGGGGAGGGGCTTCGTGACTCACCACTCTTGCTTCGACGACCTGTACC
GCTTCTTCGCCAACTCGCATTTCTACCTGGGCTTCGAGGTAGAATTTTTT
GAAAGAAGGGGGACATAAATGATGCTGGCGGGCATGGGTCTCCTCAACAC
GATGCCCATGCTGGCCACCCTCACGGTGGAGAAGGGTCTGCTAGCCGCCC
TGGGCGAGGTGCTGCAGGTGTTCCTCAGCGGCGGGCCCATGTACTTCATG
TTCCACATCCAGACGCGCGCCCACTACTTCTACCAGACGCTGCTGGCGGG
GGGCGCTCATTACCGCGCGACGGGGAGGGGCTTCGTGACTCACCACTCTT
GCTTCGACGACCTGTACCGCTTCTTCGCCAACTCGCATTTCTACCTGGGC
TTCGAGGTAGAATTTTTTGAAAGAAGGGGGACATAA
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