mRNA_M-pyrifera_M_contig98975.22768.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig98975.22768.1
Unique NamemRNA_M-pyrifera_M_contig98975.22768.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig98975.22768.1 vs. uniprot
Match: A0A813F8S3_POLGL (Hypothetical protein n=3 Tax=Polarella glacialis TaxID=89957 RepID=A0A813F8S3_POLGL)

HSP 1 Score: 84.7 bits (208), Expect = 1.240e-18
Identity = 36/65 (55.38%), Postives = 51/65 (78.46%), Query Frame = 1 
Query:    1 DVIQIHAYAKSGADVIEKVQGYYQTFQEDFEGTNGRSKKTLWITELAGGYSNSADQVQFIQQVFD 195
            D IQIHAYA++ A+V  K++GYY  FQEDFEG NGR KKTLW+TE+A G +N+++ V F++ + +
Sbjct:   81 DHIQIHAYARTAAEVKTKIEGYYDAFQEDFEGLNGRKKKTLWLTEVAMGSNNASEIVPFVEDLMN 145
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BLAST of mRNA_M-pyrifera_M_contig98975.22768.1 vs. uniprot
Match: A0A7S2D2R0_9DINO (Hypothetical protein (Fragment) n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A7S2D2R0_9DINO)

HSP 1 Score: 82.8 bits (203), Expect = 6.000e-18
Identity = 34/66 (51.52%), Postives = 51/66 (77.27%), Query Frame = 1 
Query:    1 DVIQIHAYAKSGADVIEKVQGYYQTFQEDFEGTNGRSKKTLWITELAGGYSNSADQVQFIQQVFDP 198
            D IQIHAYA++ A+V EK++GYY+ F++DF G NGR KKTLW+TE++ G +N  + V F++++  P
Sbjct:  150 DNIQIHAYARTAAEVTEKIEGYYEVFRDDFLGLNGRKKKTLWLTEVSMGSNNVTEIVPFVEKLMSP 215
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BLAST of mRNA_M-pyrifera_M_contig98975.22768.1 vs. uniprot
Match: A0A7S4GNM8_OXYMA (Hypothetical protein n=2 Tax=Oxyrrhis marina TaxID=2969 RepID=A0A7S4GNM8_OXYMA)

HSP 1 Score: 78.2 bits (191), Expect = 5.390e-17
Identity = 32/61 (52.46%), Postives = 48/61 (78.69%), Query Frame = 1 
Query:   13 IHAYAKSGADVIEKVQGYYQTFQEDFEGTNGRSKKTLWITELAGGYSNSADQVQFIQQVFD 195
            IHAYA++ A+V EK++GY   FQEDF+GTNGR KKTLW+TE+A G +N+++  +F+  + +
Sbjct:    1 IHAYARTAAEVKEKIKGYETVFQEDFDGTNGRKKKTLWLTEVAMGSNNASEITEFVDDLMN 61
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BLAST of mRNA_M-pyrifera_M_contig98975.22768.1 vs. uniprot
Match: A0A813LB99_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813LB99_POLGL)

HSP 1 Score: 81.6 bits (200), Expect = 1.100e-16
Identity = 36/65 (55.38%), Postives = 51/65 (78.46%), Query Frame = 1 
Query:    1 DVIQIHAYAKSGADVIEKVQGYYQTFQEDFEGTNGRSKKTLWITELAGGYSNSADQVQFIQQVFD 195
            D IQIHAYA++ A+V +KV GYY+ F+EDFEG NGR KKTLW+TE++ G ++ A+ V F+Q + +
Sbjct:  242 DHIQIHAYARTAAEVKKKVAGYYEEFKEDFEGLNGRKKKTLWLTEVSMGSNDVAEIVPFVQDLMN 306
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BLAST of mRNA_M-pyrifera_M_contig98975.22768.1 vs. uniprot
Match: A0A813HW06_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813HW06_POLGL)

HSP 1 Score: 81.6 bits (200), Expect = 1.530e-16
Identity = 36/65 (55.38%), Postives = 51/65 (78.46%), Query Frame = 1 
Query:    1 DVIQIHAYAKSGADVIEKVQGYYQTFQEDFEGTNGRSKKTLWITELAGGYSNSADQVQFIQQVFD 195
            D IQIHAYA++ A+V +KV GYY+ F+EDFEG NGR KKTLW+TE++ G ++ A+ V F+Q + +
Sbjct: 1471 DHIQIHAYARTAAEVKKKVAGYYEEFKEDFEGLNGRKKKTLWLTEVSMGSNDVAEIVPFVQDLMN 1535
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BLAST of mRNA_M-pyrifera_M_contig98975.22768.1 vs. uniprot
Match: A0A813CHI2_9DINO (SLC8A1 protein n=1 Tax=Symbiodinium necroappetens TaxID=1628268 RepID=A0A813CHI2_9DINO)

HSP 1 Score: 70.1 bits (170), Expect = 1.650e-13
Identity = 27/66 (40.91%), Postives = 46/66 (69.70%), Query Frame = 1 
Query:    1 DVIQIHAYAKSGADVIEKVQGYYQTFQEDFEGTNGRSKKTLWITELAGGYSNSADQVQFIQQVFDP 198
            + + IHAY +S  ++ +K+  Y++ F EDF+GT+GR+KKTLW+TE+  G + + D V F+  + +P
Sbjct:    6 EALPIHAYGRSAQEIKDKLHDYHKVFLEDFQGTSGRTKKTLWLTEVTMGTNEAEDLVTFVDDLMNP 71
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BLAST of mRNA_M-pyrifera_M_contig98975.22768.1 vs. uniprot
Match: A0A812U6Y1_9DINO (SLC8A1 protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812U6Y1_9DINO)

HSP 1 Score: 72.8 bits (177), Expect = 1.950e-13
Identity = 29/66 (43.94%), Postives = 47/66 (71.21%), Query Frame = 1 
Query:    1 DVIQIHAYAKSGADVIEKVQGYYQTFQEDFEGTNGRSKKTLWITELAGGYSNSADQVQFIQQVFDP 198
            + + IHAY +S  ++ +K+  Y++ F EDFEGT+GR+KKTLW+TE+  G + + D V F+ Q+ +P
Sbjct:  237 EALPIHAYGRSAQEIKDKLHEYHKVFLEDFEGTSGRTKKTLWLTEVTMGTNEAEDLVTFVDQLMNP 302
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BLAST of mRNA_M-pyrifera_M_contig98975.22768.1 vs. uniprot
Match: A0A813A072_SYMMI (SLC8A1 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A813A072_SYMMI)

HSP 1 Score: 70.1 bits (170), Expect = 1.560e-12
Identity = 27/66 (40.91%), Postives = 46/66 (69.70%), Query Frame = 1 
Query:    1 DVIQIHAYAKSGADVIEKVQGYYQTFQEDFEGTNGRSKKTLWITELAGGYSNSADQVQFIQQVFDP 198
            + + IHAY +S  ++ +K+  Y++ F EDF+GT+GR+KKTLW+TE+  G + + D V F+  + +P
Sbjct:   33 EALPIHAYGRSAQEIKDKLHDYHKVFLEDFQGTSGRTKKTLWLTEVTMGTNEAEDLVTFVDDLMNP 98
[Close]
BLAST of mRNA_M-pyrifera_M_contig98975.22768.1 vs. uniprot
Match: A0A812JGQ9_9DINO (SLC8A1 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812JGQ9_9DINO)

HSP 1 Score: 70.1 bits (170), Expect = 1.740e-12
Identity = 27/66 (40.91%), Postives = 46/66 (69.70%), Query Frame = 1 
Query:    1 DVIQIHAYAKSGADVIEKVQGYYQTFQEDFEGTNGRSKKTLWITELAGGYSNSADQVQFIQQVFDP 198
            + + IHAY +S  ++ +K+  Y++ F EDF+GT+GR+KKTLW+TE+  G + + D V F+  + +P
Sbjct:  248 EALPIHAYGRSAQEIKDKLHDYHKVFLEDFQGTSGRTKKTLWLTEVTMGTNEAEDLVTFVDDLMNP 313
[Close]
BLAST of mRNA_M-pyrifera_M_contig98975.22768.1 vs. uniprot
Match: A0A812VXL8_9DINO (SLC8A1 protein n=1 Tax=Symbiodinium sp. CCMP2456 TaxID=1519616 RepID=A0A812VXL8_9DINO)

HSP 1 Score: 69.7 bits (169), Expect = 1.970e-12
Identity = 27/66 (40.91%), Postives = 46/66 (69.70%), Query Frame = 1 
Query:    1 DVIQIHAYAKSGADVIEKVQGYYQTFQEDFEGTNGRSKKTLWITELAGGYSNSADQVQFIQQVFDP 198
            + + IHAY +S  ++ +K+  Y++ F EDF+GT+GR+KKTLW+TE+  G + + D V F+  + +P
Sbjct:  223 EALPIHAYGRSAKEIKDKLHEYHKVFLEDFQGTSGRTKKTLWLTEVTMGTNEAEDLVTFVDDLMNP 288
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig98975.22768.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A813F8S3_POLGL1.240e-1855.38Hypothetical protein n=3 Tax=Polarella glacialis T... [more]
A0A7S2D2R0_9DINO6.000e-1851.52Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]
A0A7S4GNM8_OXYMA5.390e-1752.46Hypothetical protein n=2 Tax=Oxyrrhis marina TaxID... [more]
A0A813LB99_POLGL1.100e-1655.38Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A813HW06_POLGL1.530e-1655.38Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A813CHI2_9DINO1.650e-1340.91SLC8A1 protein n=1 Tax=Symbiodinium necroappetens ... [more]
A0A812U6Y1_9DINO1.950e-1343.94SLC8A1 protein n=1 Tax=Symbiodinium sp. CCMP2592 T... [more]
A0A813A072_SYMMI1.560e-1240.91SLC8A1 protein n=1 Tax=Symbiodinium microadriaticu... [more]
A0A812JGQ9_9DINO1.740e-1240.91SLC8A1 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=... [more]
A0A812VXL8_9DINO1.970e-1240.91SLC8A1 protein n=1 Tax=Symbiodinium sp. CCMP2456 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig98975contigM-pyrifera_M_contig98975:496..693 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size198
Cds size198
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816906.4751024-CDS-M-pyrifera_M_contig98975:495..6931622816906.4751024-CDS-M-pyrifera_M_contig98975:495..693Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig98975 496..693 -
1692278248.0567496-CDS-M-pyrifera_M_contig98975:495..6931692278248.0567496-CDS-M-pyrifera_M_contig98975:495..693Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig98975 496..693 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig98975.22768.1prot_M-pyrifera_M_contig98975.22768.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig98975 496..693 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig98975.22768.1

>prot_M-pyrifera_M_contig98975.22768.1 ID=prot_M-pyrifera_M_contig98975.22768.1|Name=mRNA_M-pyrifera_M_contig98975.22768.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=66bp
DVIQIHAYAKSGADVIEKVQGYYQTFQEDFEGTNGRSKKTLWITELAGGY
SNSADQVQFIQQVFDP
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mRNA from alignment at M-pyrifera_M_contig98975:496..693-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig98975.22768.1 ID=mRNA_M-pyrifera_M_contig98975.22768.1|Name=mRNA_M-pyrifera_M_contig98975.22768.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=198bp|location=Sequence derived from alignment at M-pyrifera_M_contig98975:496..693- (Macrocystis pyrifera P11B4 male)
GATGTGATCCAAATCCATGCCTACGCAAAATCAGGCGCCGATGTGATTGA
AAAGGTGCAAGGATATTACCAAACATTTCAAGAAGATTTTGAAGGAACCA
ATGGACGATCCAAAAAGACTTTGTGGATCACTGAGCTTGCTGGAGGCTAT
TCCAACTCAGCAGACCAAGTTCAATTTATCCAGCAAGTCTTTGATCCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig98975:496..693-

>mRNA_M-pyrifera_M_contig98975.22768.1 ID=mRNA_M-pyrifera_M_contig98975.22768.1|Name=mRNA_M-pyrifera_M_contig98975.22768.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=396bp|location=Sequence derived from alignment at M-pyrifera_M_contig98975:496..693- (Macrocystis pyrifera P11B4 male)
GATGTGATCCAAATCCATGCCTACGCAAAATCAGGCGCCGATGTGATTGA
AAAGGTGCAAGGATATTACCAAACATTTCAAGAAGATTTTGAAGGAACCA
ATGGACGATCCAAAAAGACTTTGTGGATCACTGAGCTTGCTGGAGGCTAT
TCCAACTCAGCAGACCAAGTTCAATTTATCCAGCAAGTCTTTGATCCCGA
TGTGATCCAAATCCATGCCTACGCAAAATCAGGCGCCGATGTGATTGAAA
AGGTGCAAGGATATTACCAAACATTTCAAGAAGATTTTGAAGGAACCAAT
GGACGATCCAAAAAGACTTTGTGGATCACTGAGCTTGCTGGAGGCTATTC
CAACTCAGCAGACCAAGTTCAATTTATCCAGCAAGTCTTTGATCCC
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