mRNA_M-pyrifera_M_contig98749.22725.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig98749.22725.1
Unique NamemRNA_M-pyrifera_M_contig98749.22725.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig98749.22725.1 vs. uniprot
Match: A0A7Y2EW64_9ACTN (PAS domain-containing sensor histidine kinase n=1 Tax=Ilumatobacter sp. TaxID=1967498 RepID=A0A7Y2EW64_9ACTN)

HSP 1 Score: 130 bits (327), Expect = 3.460e-33
Identity = 62/108 (57.41%), Postives = 82/108 (75.93%), Query Frame = 1
Query:    1 LVAPDRPINFRVVGDGPTLPASTVSSLAVILTELLQNAVEHGYPPGSSGGTVVVELETASAELVVRVHDDGVGLAPDFDLERQNGLGLTIVRTLASGELHGEVSIRPA 324
            L +PDRP+ F V+GDG  +PA+T + L+V+LTELLQNAV+HG+P GS GG V V L     EL +RV D+G G+ P FDL+R NGLGL+IVRTL + EL+G +++RPA
Sbjct:  365 LQSPDRPVRFTVIGDGGRIPANTATPLSVVLTELLQNAVDHGFPEGSRGGEVSVALSQRPKELDIRVIDNGRGVEPGFDLDRANGLGLSIVRTLVTTELNGSITMRPA 472          
BLAST of mRNA_M-pyrifera_M_contig98749.22725.1 vs. uniprot
Match: A0A7K1EJL1_9ACTN (ATPase n=2 Tax=root TaxID=1 RepID=A0A7K1EJL1_9ACTN)

HSP 1 Score: 129 bits (323), Expect = 1.250e-32
Identity = 68/136 (50.00%), Postives = 87/136 (63.97%), Query Frame = 1
Query:    1 LVAPDRPINFRVVGDGPTLPASTVSSLAVILTELLQNAVEHGYPPGSSGGTVVVELETASAELVVRVHDDGVGLAPDFDLERQNGLGLTIVRTLASGELHGEVSIRPAFG------------GGKGAVAQLKVVLD 372
            L +PDRP+ F V+GDG  LPA+ V+ L+V+LTELLQNAV+HGY  G  GG+VVV L     EL V V DDG G+APDF L+   GLGL+IVRTL + EL G + +RPA              G  G V +L+V ++
Sbjct:  363 LQSPDRPMRFEVMGDGGRLPATVVTPLSVVLTELLQNAVDHGYTEGDGGGSVVVRLGCTDTELTVAVIDDGRGIAPDFSLDDATGLGLSIVRTLVTTELAGSIEMRPARSEDLEAVGLTVVEGNTGTVIELRVPME 498          
BLAST of mRNA_M-pyrifera_M_contig98749.22725.1 vs. uniprot
Match: A0A524B586_9ACTN (ATPase n=1 Tax=Acidimicrobiales bacterium mtb01 TaxID=1967499 RepID=A0A524B586_9ACTN)

HSP 1 Score: 127 bits (319), Expect = 4.230e-32
Identity = 62/108 (57.41%), Postives = 80/108 (74.07%), Query Frame = 1
Query:    1 LVAPDRPINFRVVGDGPTLPASTVSSLAVILTELLQNAVEHGYPPGSSGGTVVVELETASAELVVRVHDDGVGLAPDFDLERQNGLGLTIVRTLASGELHGEVSIRPA 324
            L +PDRP+ F V GDG  LPA+  + L+V+LTELLQNAV+HG+P GS GGTVVV L     E+ + V +DG+GL P FDL+   GLGL+IVRTL + EL+G +S+RPA
Sbjct:  359 LQSPDRPVRFTVQGDGGRLPATVATPLSVVLTELLQNAVDHGFPEGSDGGTVVVVLGGDDDEMHITVVNDGIGLDPSFDLDAATGLGLSIVRTLVTTELNGSISMRPA 466          
BLAST of mRNA_M-pyrifera_M_contig98749.22725.1 vs. uniprot
Match: A0A7K1CB03_9ACTN (ATPase n=2 Tax=root TaxID=1 RepID=A0A7K1CB03_9ACTN)

HSP 1 Score: 127 bits (319), Expect = 4.320e-32
Identity = 63/107 (58.88%), Postives = 79/107 (73.83%), Query Frame = 1
Query:    1 LVAPDRPINFRVVGDGPTLPASTVSSLAVILTELLQNAVEHGYPPGSSGGTVVVELETASAELVVRVHDDGVGLAPDFDLERQNGLGLTIVRTLASGELHGEVSIRP 321
            L +PDRP+ F V GDG  LPA+  + L+V+LTELLQNAV+HG+P GS GGTVVV+L     E+ +RV +DG GL P FDL    GLGL+IVRTL + EL+G +SIRP
Sbjct:  359 LQSPDRPVRFMVQGDGGRLPATIATPLSVVLTELLQNAVDHGFPEGSEGGTVVVDLGGDDDEIAIRVVNDGRGLDPGFDLNGATGLGLSIVRTLVTTELNGTISIRP 465          
BLAST of mRNA_M-pyrifera_M_contig98749.22725.1 vs. uniprot
Match: A0A524NBG8_9ACTN (ATPase n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A524NBG8_9ACTN)

HSP 1 Score: 125 bits (313), Expect = 3.400e-31
Identity = 66/134 (49.25%), Postives = 89/134 (66.42%), Query Frame = 1
Query:    1 LVAPDRPINFRVVGDGPTLPASTVSSLAVILTELLQNAVEHGYPPGSSGGTVVVELETASAELVVRVHDDGVGLAPDFDLERQNGLGLTIVRTLASGELHGEVSIRPAF-------GGGKGAVAQLKVVLDSTL 381
            L +PDRP+ F V GDG  +PA+T + L+V+LTELLQNAV+HG+P GS GG V V L    A L VRV D+G G+ P F+L++  GLGL+IVRTL + EL+G + IRPA        G G G+  Q   +++ T+
Sbjct:  366 LQSPDRPVRFTVGGDGGRIPANTATPLSVVLTELLQNAVDHGFPEGSGGGDVNVALSHLDARLTVRVVDNGRGVDPTFELDQATGLGLSIVRTLVTTELNGTIEIRPATTVELELAGIGDGSSRQHGTIIELTV 499          
BLAST of mRNA_M-pyrifera_M_contig98749.22725.1 vs. uniprot
Match: A0A6I3WIA5_9ACTN (ATPase n=4 Tax=root TaxID=1 RepID=A0A6I3WIA5_9ACTN)

HSP 1 Score: 124 bits (312), Expect = 4.420e-31
Identity = 67/132 (50.76%), Postives = 88/132 (66.67%), Query Frame = 1
Query:   13 DRPINFRVVGDGPTLPASTVSSLAVILTELLQNAVEHGYPPGSSGGTVVVELETASAELVVRVHDDGVGLAPDFDLERQNGLGLTIVRTLASGELHGEVSIRPAFGG------------GKGAVAQLKVVLD 372
            DRP+ F V GDG  LP++  + L+V+LTELLQNAV+HG+P GS+GG+VVV+L   +AEL VRV DDG GL P F+L +  GLGL+IVRTL + EL G +++RPA               G G V  L+V L+
Sbjct:  363 DRPVKFIVQGDGGRLPSTVATPLSVVLTELLQNAVDHGFPEGSAGGSVVVQLANDAAELRVRVLDDGRGLDPRFELSKATGLGLSIVRTLVTTELAGSLTMRPAAAEDFVAAGIEHGARGGGTVVDLRVPLE 494          
BLAST of mRNA_M-pyrifera_M_contig98749.22725.1 vs. uniprot
Match: A0A7W1HI54_9ACTN (Histidine kinase N-terminal domain-containing protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7W1HI54_9ACTN)

HSP 1 Score: 124 bits (311), Expect = 6.010e-31
Identity = 60/108 (55.56%), Postives = 79/108 (73.15%), Query Frame = 1
Query:    1 LVAPDRPINFRVVGDGPTLPASTVSSLAVILTELLQNAVEHGYPPGSSGGTVVVELETASAELVVRVHDDGVGLAPDFDLERQNGLGLTIVRTLASGELHGEVSIRPA 324
            L +PDRP+ F ++GDG  +PAS  + L+V+LTEL+QNAV+HG+P GS GG VVV L+     L V V DDG GL  DFDL    GLGL+IVRTL + EL+G++++RPA
Sbjct:  359 LQSPDRPVYFSLIGDGGRIPASVATPLSVVLTELMQNAVDHGFPEGSGGGKVVVALDNDDERLKVDVVDDGRGLDADFDLAAATGLGLSIVRTLVTTELNGQITMRPA 466          
BLAST of mRNA_M-pyrifera_M_contig98749.22725.1 vs. uniprot
Match: A0A6I2ZLX8_9ACTN (ATPase n=6 Tax=root TaxID=1 RepID=A0A6I2ZLX8_9ACTN)

HSP 1 Score: 124 bits (310), Expect = 8.260e-31
Identity = 62/106 (58.49%), Postives = 78/106 (73.58%), Query Frame = 1
Query:    1 LVAPDRPINFRVVGDGPTLPASTVSSLAVILTELLQNAVEHGYPPGSSGGTVVVELETASAELVVRVHDDGVGLAPDFDLERQNGLGLTIVRTLASGELHGEVSIR 318
            L +PDRP+ F V GDG  LPA+  + L+V+LTELLQNAV+HG+P GS GGTVVVEL     E+ ++V +DG GL P FDL    GLGL+IVRTL + EL+G +SIR
Sbjct:  359 LQSPDRPVRFIVQGDGGRLPATIATPLSVVLTELLQNAVDHGFPEGSDGGTVVVELGGDDDEIEIKVINDGRGLDPSFDLNGATGLGLSIVRTLVTTELNGSISIR 464          
BLAST of mRNA_M-pyrifera_M_contig98749.22725.1 vs. uniprot
Match: A0A6J6UTS3_9ZZZZ (Unannotated protein n=2 Tax=freshwater metagenome TaxID=449393 RepID=A0A6J6UTS3_9ZZZZ)

HSP 1 Score: 116 bits (290), Expect = 9.620e-31
Identity = 61/132 (46.21%), Postives = 83/132 (62.88%), Query Frame = 1
Query:    1 LVAPDRPINFRVVGDGPTLPASTVSSLAVILTELLQNAVEHGYPPGSSGGTVVVELETASAELVVRVHDDGVGLAPDFDLERQNGLGLTIVRTLASGELHGEVSIRPAF-----------GGGKGAVAQLKV 363
            L + DRP+ F V GDG  LPA+  + L+V++ ELLQNAV+HG+P GS+GG+V+V L      L +RV D+G GL+ DFD++   GLGL+IVRTL + EL G + +RPA              G G V  LK+
Sbjct:   12 LQSTDRPVKFNVQGDGGRLPATIATPLSVVILELLQNAVDHGFPEGSAGGSVLVLLSHDDESLNIRVTDNGRGLSNDFDIKAATGLGLSIVRTLVTTELAGTIQMRPALVDDSIGELKIASNGAGTVVDLKI 143          
BLAST of mRNA_M-pyrifera_M_contig98749.22725.1 vs. uniprot
Match: A0A6L6DW56_9ACTN (ATPase n=2 Tax=root TaxID=1 RepID=A0A6L6DW56_9ACTN)

HSP 1 Score: 123 bits (309), Expect = 1.220e-30
Identity = 61/108 (56.48%), Postives = 77/108 (71.30%), Query Frame = 1
Query:    1 LVAPDRPINFRVVGDGPTLPASTVSSLAVILTELLQNAVEHGYPPGSSGGTVVVELETASAELVVRVHDDGVGLAPDFDLERQNGLGLTIVRTLASGELHGEVSIRPA 324
            L +PDRP+ F V+GDG  LPA+ V+ L+V+LTELLQNAV+HG+P G  GG VVVEL+ +  EL V V DDG G+   F L    GLGL+IVRTL + EL G + +RPA
Sbjct:  363 LQSPDRPVRFVVIGDGGRLPATVVTPLSVVLTELLQNAVDHGFPEGDGGGNVVVELDVSDTELRVSVIDDGRGIPDGFKLADATGLGLSIVRTLVTTELAGSIEMRPA 470          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig98749.22725.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7Y2EW64_9ACTN3.460e-3357.41PAS domain-containing sensor histidine kinase n=1 ... [more]
A0A7K1EJL1_9ACTN1.250e-3250.00ATPase n=2 Tax=root TaxID=1 RepID=A0A7K1EJL1_9ACTN[more]
A0A524B586_9ACTN4.230e-3257.41ATPase n=1 Tax=Acidimicrobiales bacterium mtb01 Ta... [more]
A0A7K1CB03_9ACTN4.320e-3258.88ATPase n=2 Tax=root TaxID=1 RepID=A0A7K1CB03_9ACTN[more]
A0A524NBG8_9ACTN3.400e-3149.25ATPase n=1 Tax=Acidimicrobiales bacterium TaxID=22... [more]
A0A6I3WIA5_9ACTN4.420e-3150.76ATPase n=4 Tax=root TaxID=1 RepID=A0A6I3WIA5_9ACTN[more]
A0A7W1HI54_9ACTN6.010e-3155.56Histidine kinase N-terminal domain-containing prot... [more]
A0A6I2ZLX8_9ACTN8.260e-3158.49ATPase n=6 Tax=root TaxID=1 RepID=A0A6I2ZLX8_9ACTN[more]
A0A6J6UTS3_9ZZZZ9.620e-3146.21Unannotated protein n=2 Tax=freshwater metagenome ... [more]
A0A6L6DW56_9ACTN1.220e-3056.48ATPase n=2 Tax=root TaxID=1 RepID=A0A6L6DW56_9ACTN[more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig98749contigM-pyrifera_M_contig98749:2..385 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score119.0
Seed ortholog evalue1.6e-24
Seed eggNOG ortholog1313172.YM304_09850
Preferred namepdtaS
KEGG koko:K00936
KEGG ModuleM00839
Hectar predicted targeting categoryother localisation
GOsGO:0000155,GO:0000160,GO:0000166,GO:0003674,GO:0003824,GO:0004672,GO:0004673,GO:0005488,GO:0005524,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0007154,GO:0007165,GO:0008144,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0016775,GO:0017076,GO:0018106,GO:0018193,GO:0018202,GO:0019538,GO:0023014,GO:0023052,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0035556,GO:0035639,GO:0036094,GO:0036211,GO:0043167,GO:0043168,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0046777,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0065007,GO:0071704,GO:0097159,GO:0097367,GO:0140096,GO:1901265,GO:1901363,GO:1901564
EggNOG free text desc.Histidine kinase
EggNOG OGs2GKMP@201174,4CMRV@84992,COG3920@1,COG3920@2
EC2.7.13.3
COG Functional cat.T
Best tax levelAcidimicrobiia
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00002,ko01000,ko01001,ko02022
Exons1
Model size384
Cds size384
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816904.486748-CDS-M-pyrifera_M_contig98749:1..3851622816904.486748-CDS-M-pyrifera_M_contig98749:1..385Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig98749 2..385 +
1692278246.9416554-CDS-M-pyrifera_M_contig98749:1..3851692278246.9416554-CDS-M-pyrifera_M_contig98749:1..385Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig98749 2..385 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig98749.22725.1prot_M-pyrifera_M_contig98749.22725.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig98749 2..385 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig98749.22725.1

>prot_M-pyrifera_M_contig98749.22725.1 ID=prot_M-pyrifera_M_contig98749.22725.1|Name=mRNA_M-pyrifera_M_contig98749.22725.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=128bp
LVAPDRPINFRVVGDGPTLPASTVSSLAVILTELLQNAVEHGYPPGSSGG
TVVVELETASAELVVRVHDDGVGLAPDFDLERQNGLGLTIVRTLASGELH
GEVSIRPAFGGGKGAVAQLKVVLDSTL*
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mRNA from alignment at M-pyrifera_M_contig98749:2..385+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig98749.22725.1 ID=mRNA_M-pyrifera_M_contig98749.22725.1|Name=mRNA_M-pyrifera_M_contig98749.22725.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=384bp|location=Sequence derived from alignment at M-pyrifera_M_contig98749:2..385+ (Macrocystis pyrifera P11B4 male)
CTCGTCGCTCCCGACCGGCCGATCAACTTCCGAGTGGTCGGTGACGGTCC GACACTGCCGGCCAGCACCGTGAGTTCGCTCGCCGTGATCCTGACCGAGC TGCTGCAGAATGCGGTCGAACACGGGTACCCGCCGGGAAGCTCGGGCGGC ACGGTCGTGGTCGAGCTCGAGACCGCGTCGGCCGAACTCGTGGTCCGGGT GCATGACGACGGTGTCGGGCTTGCGCCCGATTTCGATCTCGAGCGCCAGA ACGGACTCGGACTGACGATCGTGCGCACGCTCGCGTCAGGTGAACTGCAT GGGGAGGTGAGCATCCGGCCGGCCTTCGGTGGAGGGAAGGGAGCAGTAGC TCAGCTCAAGGTCGTGCTCGATTCGACGCTCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig98749:2..385+

>mRNA_M-pyrifera_M_contig98749.22725.1 ID=mRNA_M-pyrifera_M_contig98749.22725.1|Name=mRNA_M-pyrifera_M_contig98749.22725.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=768bp|location=Sequence derived from alignment at M-pyrifera_M_contig98749:2..385+ (Macrocystis pyrifera P11B4 male)
CTCGTCGCTCCCGACCGGCCGATCAACTTCCGAGTGGTCGGTGACGGTCC
GACACTGCCGGCCAGCACCGTGAGTTCGCTCGCCGTGATCCTGACCGAGC
TGCTGCAGAATGCGGTCGAACACGGGTACCCGCCGGGAAGCTCGGGCGGC
ACGGTCGTGGTCGAGCTCGAGACCGCGTCGGCCGAACTCGTGGTCCGGGT
GCATGACGACGGTGTCGGGCTTGCGCCCGATTTCGATCTCGAGCGCCAGA
ACGGACTCGGACTGACGATCGTGCGCACGCTCGCGTCAGGTGAACTGCAT
GGGGAGGTGAGCATCCGGCCGGCCTTCGGTGGAGGGAAGGGAGCAGTAGC
TCAGCTCAAGGTCGTGCTCGATTCGACGCTCTGACTCGTCGCTCCCGACC
GGCCGATCAACTTCCGAGTGGTCGGTGACGGTCCGACACTGCCGGCCAGC
ACCGTGAGTTCGCTCGCCGTGATCCTGACCGAGCTGCTGCAGAATGCGGT
CGAACACGGGTACCCGCCGGGAAGCTCGGGCGGCACGGTCGTGGTCGAGC
TCGAGACCGCGTCGGCCGAACTCGTGGTCCGGGTGCATGACGACGGTGTC
GGGCTTGCGCCCGATTTCGATCTCGAGCGCCAGAACGGACTCGGACTGAC
GATCGTGCGCACGCTCGCGTCAGGTGAACTGCATGGGGAGGTGAGCATCC
GGCCGGCCTTCGGTGGAGGGAAGGGAGCAGTAGCTCAGCTCAAGGTCGTG
CTCGATTCGACGCTCTGA
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