mRNA_M-pyrifera_M_contig98601.22702.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig98601.22702.1
Unique NamemRNA_M-pyrifera_M_contig98601.22702.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig98601.22702.1 vs. uniprot
Match: A0A654B835_9GAMM (NADP-dependent oxidoreductase n=24 Tax=Halomonas TaxID=2745 RepID=A0A654B835_9GAMM)

HSP 1 Score: 263 bits (671), Expect = 5.790e-86
Identity = 127/133 (95.49%), Postives = 133/133 (100.00%), Query Frame = 1 
Query:    4 AEELSDAVKLASPNGIDVYYENVGGICLEAALSQLNEGARIAVCGMIDSYNAKEPTPGPSNLSQLVVRKAKMQGFIVADHWSSYPYFLNEVAPQVAEGKLVYKETVKEGLESTPDAFLALFDGGNTGKMLVKL 402
            A+ELSDA+KLASPNGIDVY+ENVGGICLEAAL+QLNEGARIAVCGMIDSYNAKEPTPGPSNLSQLVVRKAKMQGFIVADHW+SYPYFLNEVAPQVAEGKLVYKETVKEGLE+TPDAFLALFDGGNTGKMLVKL
Sbjct:  200 AQELSDAIKLASPNGIDVYFENVGGICLEAALNQLNEGARIAVCGMIDSYNAKEPTPGPSNLSQLVVRKAKMQGFIVADHWASYPYFLNEVAPQVAEGKLVYKETVKEGLENTPDAFLALFDGGNTGKMLVKL 332
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BLAST of mRNA_M-pyrifera_M_contig98601.22702.1 vs. uniprot
Match: A0A0F9YYY4_9ZZZZ (PKS_ER domain-containing protein n=1 Tax=marine sediment metagenome TaxID=412755 RepID=A0A0F9YYY4_9ZZZZ)

HSP 1 Score: 253 bits (646), Expect = 3.570e-82
Identity = 121/134 (90.30%), Postives = 130/134 (97.01%), Query Frame = 1 
Query:    1 TAEELSDAVKLASPNGIDVYYENVGGICLEAALSQLNEGARIAVCGMIDSYNAKEPTPGPSNLSQLVVRKAKMQGFIVADHWSSYPYFLNEVAPQVAEGKLVYKETVKEGLESTPDAFLALFDGGNTGKMLVKL 402
            TA ELSDA+KLASPNGIDVY+ENVGG+CLEAALSQLNEGARIAVCGMI+SYNA+ PTPGPSNLSQLVVRKAKMQGFIV DHW+SYPYFLNEVAPQVA+GKL YKETVKEGLESTPDAFLALF+GGNTGKML+KL
Sbjct:  199 TALELSDAIKLASPNGIDVYFENVGGVCLEAALSQLNEGARIAVCGMIESYNAQAPTPGPSNLSQLVVRKAKMQGFIVTDHWASYPYFLNEVAPQVAQGKLTYKETVKEGLESTPDAFLALFEGGNTGKMLIKL 332
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BLAST of mRNA_M-pyrifera_M_contig98601.22702.1 vs. uniprot
Match: UPI001EF09D3A (NADP-dependent oxidoreductase n=1 Tax=Halomonas profundi TaxID=2852117 RepID=UPI001EF09D3A)

HSP 1 Score: 251 bits (642), Expect = 1.440e-81
Identity = 120/134 (89.55%), Postives = 128/134 (95.52%), Query Frame = 1 
Query:    1 TAEELSDAVKLASPNGIDVYYENVGGICLEAALSQLNEGARIAVCGMIDSYNAKEPTPGPSNLSQLVVRKAKMQGFIVADHWSSYPYFLNEVAPQVAEGKLVYKETVKEGLESTPDAFLALFDGGNTGKMLVKL 402
            TA+ELSDA+KLA PNGIDVYYENVGGICLEAALSQLNEGARIAVCGMIDSYNA+ P PGPSNLSQL++RKAKMQGFIV+DHWSSYPYFLNEV PQV  GKLVYKET+KEGLESTPDAFLALF+GGNTGKMLVKL
Sbjct:  199 TAQELSDAIKLACPNGIDVYYENVGGICLEAALSQLNEGARIAVCGMIDSYNAEAPAPGPSNLSQLLIRKAKMQGFIVSDHWSSYPYFLNEVTPQVEAGKLVYKETIKEGLESTPDAFLALFEGGNTGKMLVKL 332
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BLAST of mRNA_M-pyrifera_M_contig98601.22702.1 vs. uniprot
Match: A0A060BDT1_9GAMM (NADP-dependent oxidoreductase n=15 Tax=Halomonas TaxID=2745 RepID=A0A060BDT1_9GAMM)

HSP 1 Score: 248 bits (632), Expect = 5.010e-80
Identity = 119/134 (88.81%), Postives = 129/134 (96.27%), Query Frame = 1 
Query:    1 TAEELSDAVKLASPNGIDVYYENVGGICLEAALSQLNEGARIAVCGMIDSYNAKEPTPGPSNLSQLVVRKAKMQGFIVADHWSSYPYFLNEVAPQVAEGKLVYKETVKEGLESTPDAFLALFDGGNTGKMLVKL 402
            +A+ELSDA+KLASPNGIDVY+ENVGG CLEAALSQLN+GARIAVCGMIDSYNA+ PTPGPSNLSQLVVRKAKMQGFIVADHWSSY YFLNEV+PQVA+G + YKETVKEGLESTPDAFLALF+GGNTGKMLVKL
Sbjct:  199 SAQELSDAIKLASPNGIDVYFENVGGTCLEAALSQLNDGARIAVCGMIDSYNAEAPTPGPSNLSQLVVRKAKMQGFIVADHWSSYRYFLNEVSPQVAKGNIAYKETVKEGLESTPDAFLALFEGGNTGKMLVKL 332
[Close]
BLAST of mRNA_M-pyrifera_M_contig98601.22702.1 vs. uniprot
Match: A0A1A9R050_9GAMM (NADP-dependent oxidoreductase n=2 Tax=unclassified Halomonas TaxID=2609666 RepID=A0A1A9R050_9GAMM)

HSP 1 Score: 247 bits (631), Expect = 6.690e-80
Identity = 119/133 (89.47%), Postives = 125/133 (93.98%), Query Frame = 1 
Query:    4 AEELSDAVKLASPNGIDVYYENVGGICLEAALSQLNEGARIAVCGMIDSYNAKEPTPGPSNLSQLVVRKAKMQGFIVADHWSSYPYFLNEVAPQVAEGKLVYKETVKEGLESTPDAFLALFDGGNTGKMLVKL 402
            A EL DA+KLASPNGIDVY+ENVGGICLEAALSQLNEGARIAVCGMID YNAKEP PGP NL+QL++RKAKMQGFIV DHW+SY YFLNEVAPQVAEGKL YKETVKEGLESTPDAFLALFDGGNTGKMLVKL
Sbjct:  200 AHELGDAIKLASPNGIDVYFENVGGICLEAALSQLNEGARIAVCGMIDGYNAKEPAPGPRNLAQLIMRKAKMQGFIVTDHWASYSYFLNEVAPQVAEGKLDYKETVKEGLESTPDAFLALFDGGNTGKMLVKL 332
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BLAST of mRNA_M-pyrifera_M_contig98601.22702.1 vs. uniprot
Match: A0A1N6DEM2_9GAMM (PKS_ER domain-containing protein n=19 Tax=Halomonadaceae TaxID=28256 RepID=A0A1N6DEM2_9GAMM)

HSP 1 Score: 247 bits (631), Expect = 7.110e-80
Identity = 119/134 (88.81%), Postives = 128/134 (95.52%), Query Frame = 1 
Query:    1 TAEELSDAVKLASPNGIDVYYENVGGICLEAALSQLNEGARIAVCGMIDSYNAKEPTPGPSNLSQLVVRKAKMQGFIVADHWSSYPYFLNEVAPQVAEGKLVYKETVKEGLESTPDAFLALFDGGNTGKMLVKL 402
            +A+ELSDA+KLASPNGIDVY+ENVGGICLEAALSQLNEGARIAVCGMID YNA+ P PGPSNLSQLV RKAKMQGFIVADHW+SY YFLNEVAPQVA+GKL YKET+KEGLESTPDAFLALF+GGNTGKMLVKL
Sbjct:  199 SAQELSDAIKLASPNGIDVYFENVGGICLEAALSQLNEGARIAVCGMIDGYNAETPAPGPSNLSQLVARKAKMQGFIVADHWASYGYFLNEVAPQVADGKLDYKETIKEGLESTPDAFLALFEGGNTGKMLVKL 332
[Close]
BLAST of mRNA_M-pyrifera_M_contig98601.22702.1 vs. uniprot
Match: H0IY47_9GAMM (Zinc-binding alcohol dehydrogenase n=1 Tax=Halomonas sp. GFAJ-1 TaxID=1118153 RepID=H0IY47_9GAMM)

HSP 1 Score: 244 bits (624), Expect = 7.920e-79
Identity = 118/134 (88.06%), Postives = 128/134 (95.52%), Query Frame = 1 
Query:    1 TAEELSDAVKLASPNGIDVYYENVGGICLEAALSQLNEGARIAVCGMIDSYNAKEPTPGPSNLSQLVVRKAKMQGFIVADHWSSYPYFLNEVAPQVAEGKLVYKETVKEGLESTPDAFLALFDGGNTGKMLVKL 402
            TA+ELSDA+KLASPNGIDVY+ENVGGICLEAALSQLNEGARIAVCGMIDSYNA+ P PGP NL+QLVVRKAKMQGFIVADHW+SY YFLNEVAPQVA+G + YKETV+EGLESTPDAFLALF+GGNTGKMLVKL
Sbjct:  199 TAQELSDAIKLASPNGIDVYFENVGGICLEAALSQLNEGARIAVCGMIDSYNAETPPPGPRNLAQLVVRKAKMQGFIVADHWASYRYFLNEVAPQVAKGSISYKETVQEGLESTPDAFLALFEGGNTGKMLVKL 332
[Close]
BLAST of mRNA_M-pyrifera_M_contig98601.22702.1 vs. uniprot
Match: UPI001D09AF64 (NADP-dependent oxidoreductase n=1 Tax=Halomonas malpeensis TaxID=1172368 RepID=UPI001D09AF64)

HSP 1 Score: 242 bits (617), Expect = 9.370e-78
Identity = 118/134 (88.06%), Postives = 127/134 (94.78%), Query Frame = 1 
Query:    1 TAEELSDAVKLASPNGIDVYYENVGGICLEAALSQLNEGARIAVCGMIDSYNAKEPTPGPSNLSQLVVRKAKMQGFIVADHWSSYPYFLNEVAPQVAEGKLVYKETVKEGLESTPDAFLALFDGGNTGKMLVKL 402
            TA ELSDA++LASP GIDVY+ENVGGICLEAALSQLNEGARIAVCGMIDSYNA++P PGPSNLSQLVVRKAKMQGFIVADHWS+Y YFLNEVAPQVA GK  Y+ETVKEGLESTP+AFLALF+GGNTGKMLVKL
Sbjct:  199 TAGELSDAIQLASPEGIDVYFENVGGICLEAALSQLNEGARIAVCGMIDSYNAEKPAPGPSNLSQLVVRKAKMQGFIVADHWSNYGYFLNEVAPQVAAGKFDYQETVKEGLESTPEAFLALFEGGNTGKMLVKL 332
[Close]
BLAST of mRNA_M-pyrifera_M_contig98601.22702.1 vs. uniprot
Match: A0A1U9R5C1_9GAMM (NADP-dependent oxidoreductase n=2 Tax=Halomonas TaxID=2745 RepID=A0A1U9R5C1_9GAMM)

HSP 1 Score: 239 bits (611), Expect = 7.820e-77
Identity = 116/134 (86.57%), Postives = 126/134 (94.03%), Query Frame = 1 
Query:    1 TAEELSDAVKLASPNGIDVYYENVGGICLEAALSQLNEGARIAVCGMIDSYNAKEPTPGPSNLSQLVVRKAKMQGFIVADHWSSYPYFLNEVAPQVAEGKLVYKETVKEGLESTPDAFLALFDGGNTGKMLVKL 402
            +A+ELSDA+KLASPNGIDVY+ENVGG CLEAALSQLNEGARIAVCGMIDSYNA+ P PGP NLSQLVVRKAKMQGFIVADHWSSY  FLNEVAPQVA+G L YKET+++GLESTPDAFLALF+GGNTGKMLVKL
Sbjct:  200 SAQELSDAIKLASPNGIDVYFENVGGACLEAALSQLNEGARIAVCGMIDSYNAETPPPGPRNLSQLVVRKAKMQGFIVADHWSSYRQFLNEVAPQVAKGNLSYKETIQDGLESTPDAFLALFEGGNTGKMLVKL 333
[Close]
BLAST of mRNA_M-pyrifera_M_contig98601.22702.1 vs. uniprot
Match: A0A7C9NSQ8_9GAMM (NADP-dependent oxidoreductase n=2 Tax=Halomonas TaxID=2745 RepID=A0A7C9NSQ8_9GAMM)

HSP 1 Score: 239 bits (610), Expect = 1.040e-76
Identity = 113/134 (84.33%), Postives = 126/134 (94.03%), Query Frame = 1 
Query:    1 TAEELSDAVKLASPNGIDVYYENVGGICLEAALSQLNEGARIAVCGMIDSYNAKEPTPGPSNLSQLVVRKAKMQGFIVADHWSSYPYFLNEVAPQVAEGKLVYKETVKEGLESTPDAFLALFDGGNTGKMLVKL 402
            TA+ELSDA+ LASP+GIDVY+ENVGGICLEAALSQLNEGARIA+CGMID YNAK PTPGPSNL+QL+VRKAK+QGFIVADHW+SY YFLNEV PQ+AEGKL YKET++EGLESTPDAFL LF+G NTGKMLVKL
Sbjct:  199 TAQELSDAIMLASPDGIDVYFENVGGICLEAALSQLNEGARIALCGMIDGYNAKTPTPGPSNLAQLIVRKAKIQGFIVADHWASYRYFLNEVTPQIAEGKLDYKETIREGLESTPDAFLELFEGANTGKMLVKL 332
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig98601.22702.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A654B835_9GAMM5.790e-8695.49NADP-dependent oxidoreductase n=24 Tax=Halomonas T... [more]
A0A0F9YYY4_9ZZZZ3.570e-8290.30PKS_ER domain-containing protein n=1 Tax=marine se... [more]
UPI001EF09D3A1.440e-8189.55NADP-dependent oxidoreductase n=1 Tax=Halomonas pr... [more]
A0A060BDT1_9GAMM5.010e-8088.81NADP-dependent oxidoreductase n=15 Tax=Halomonas T... [more]
A0A1A9R050_9GAMM6.690e-8089.47NADP-dependent oxidoreductase n=2 Tax=unclassified... [more]
A0A1N6DEM2_9GAMM7.110e-8088.81PKS_ER domain-containing protein n=19 Tax=Halomona... [more]
H0IY47_9GAMM7.920e-7988.06Zinc-binding alcohol dehydrogenase n=1 Tax=Halomon... [more]
UPI001D09AF649.370e-7888.06NADP-dependent oxidoreductase n=1 Tax=Halomonas ma... [more]
A0A1U9R5C1_9GAMM7.820e-7786.57NADP-dependent oxidoreductase n=2 Tax=Halomonas Ta... [more]
A0A7C9NSQ8_9GAMM1.040e-7684.33NADP-dependent oxidoreductase n=2 Tax=Halomonas Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig98601contigM-pyrifera_M_contig98601:3..407 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score264.2
Seed ortholog evalue3.3e-68
Seed eggNOG ortholog1380358.JADJ01000007_gene2890
KEGG koko:K07119
Hectar predicted targeting categoryother localisation
EggNOG free text desc.NAD(P)-dependent
EggNOG OGs1MUC2@1224,1RNGM@1236,1XHQ1@135619,COG2130@1,COG2130@2
COG Functional cat.S
Best tax levelOceanospirillales
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons1
Model size405
Cds size405
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816903.3055847-CDS-M-pyrifera_M_contig98601:2..4071622816903.3055847-CDS-M-pyrifera_M_contig98601:2..407Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig98601 3..407 +
1692278246.2283192-CDS-M-pyrifera_M_contig98601:2..4071692278246.2283192-CDS-M-pyrifera_M_contig98601:2..407Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig98601 3..407 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig98601.22702.1prot_M-pyrifera_M_contig98601.22702.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig98601 3..407 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig98601.22702.1

>prot_M-pyrifera_M_contig98601.22702.1 ID=prot_M-pyrifera_M_contig98601.22702.1|Name=mRNA_M-pyrifera_M_contig98601.22702.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=135bp
TAEELSDAVKLASPNGIDVYYENVGGICLEAALSQLNEGARIAVCGMIDS
YNAKEPTPGPSNLSQLVVRKAKMQGFIVADHWSSYPYFLNEVAPQVAEGK
LVYKETVKEGLESTPDAFLALFDGGNTGKMLVKL*
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mRNA from alignment at M-pyrifera_M_contig98601:3..407+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig98601.22702.1 ID=mRNA_M-pyrifera_M_contig98601.22702.1|Name=mRNA_M-pyrifera_M_contig98601.22702.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=405bp|location=Sequence derived from alignment at M-pyrifera_M_contig98601:3..407+ (Macrocystis pyrifera P11B4 male)
ACTGCAGAGGAGTTAAGCGATGCCGTTAAGCTCGCCAGCCCCAACGGCAT
CGATGTCTATTACGAAAACGTCGGCGGCATCTGCCTAGAAGCGGCATTGA
GCCAGCTCAATGAAGGCGCGCGGATTGCCGTTTGCGGCATGATCGACAGC
TATAATGCAAAAGAGCCCACTCCCGGCCCGAGCAATCTCTCTCAGTTGGT
CGTGCGCAAAGCCAAAATGCAGGGCTTTATCGTGGCTGACCATTGGTCTA
GCTACCCCTATTTCCTAAACGAAGTAGCCCCTCAAGTAGCAGAAGGCAAG
CTGGTTTATAAAGAGACAGTGAAAGAGGGCCTGGAGAGCACACCCGACGC
CTTCCTGGCCCTGTTTGATGGCGGCAACACCGGTAAAATGCTGGTAAAAC
TGTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig98601:3..407+

>mRNA_M-pyrifera_M_contig98601.22702.1 ID=mRNA_M-pyrifera_M_contig98601.22702.1|Name=mRNA_M-pyrifera_M_contig98601.22702.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=810bp|location=Sequence derived from alignment at M-pyrifera_M_contig98601:3..407+ (Macrocystis pyrifera P11B4 male)
ACTGCAGAGGAGTTAAGCGATGCCGTTAAGCTCGCCAGCCCCAACGGCAT
CGATGTCTATTACGAAAACGTCGGCGGCATCTGCCTAGAAGCGGCATTGA
GCCAGCTCAATGAAGGCGCGCGGATTGCCGTTTGCGGCATGATCGACAGC
TATAATGCAAAAGAGCCCACTCCCGGCCCGAGCAATCTCTCTCAGTTGGT
CGTGCGCAAAGCCAAAATGCAGGGCTTTATCGTGGCTGACCATTGGTCTA
GCTACCCCTATTTCCTAAACGAAGTAGCCCCTCAAGTAGCAGAAGGCAAG
CTGGTTTATAAAGAGACAGTGAAAGAGGGCCTGGAGAGCACACCCGACGC
CTTCCTGGCCCTGTTTGATGGCGGCAACACCGGTAAAATGCTGGTAAAAC
TGTAGACTGCAGAGGAGTTAAGCGATGCCGTTAAGCTCGCCAGCCCCAAC
GGCATCGATGTCTATTACGAAAACGTCGGCGGCATCTGCCTAGAAGCGGC
ATTGAGCCAGCTCAATGAAGGCGCGCGGATTGCCGTTTGCGGCATGATCG
ACAGCTATAATGCAAAAGAGCCCACTCCCGGCCCGAGCAATCTCTCTCAG
TTGGTCGTGCGCAAAGCCAAAATGCAGGGCTTTATCGTGGCTGACCATTG
GTCTAGCTACCCCTATTTCCTAAACGAAGTAGCCCCTCAAGTAGCAGAAG
GCAAGCTGGTTTATAAAGAGACAGTGAAAGAGGGCCTGGAGAGCACACCC
GACGCCTTCCTGGCCCTGTTTGATGGCGGCAACACCGGTAAAATGCTGGT
AAAACTGTAG
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