mRNA_M-pyrifera_M_contig9854.22692.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig9854.22692.1
Unique NamemRNA_M-pyrifera_M_contig9854.22692.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig9854.22692.1 vs. uniprot
Match: D8LTX1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTX1_ECTSI)

HSP 1 Score: 84.0 bits (206), Expect = 2.720e-17
Identity = 64/124 (51.61%), Postives = 77/124 (62.10%), Query Frame = 1 
Query:    1 RQTGLVTTKRKAAKRALLEAPSKRRGGSGGATSTARKSGSKTVSKKGRKKNGR-AVGLLEQARLELRGKSQAARNVSLLSYVRGKEGTKT---------RTGKLTVSKSQKAVEKLLVLDGSKA 342
            ++T L T+K+KAAKRALL+APSKR+G   G+TS A  S      K  R K GR  +GLL++AR ELRGKS  ARNVSLLSY    EG            + G    SKS+KAVE LL+LD  KA
Sbjct:   25 KRTDLSTSKKKAAKRALLQAPSKRKGS--GSTSVATSSSRSVTKKSARNKAGRRTMGLLDKARRELRGKSLVARNVSLLSYSSRGEGRAAGAGADSGAAKVGGGVASKSRKAVEHLLLLDARKA 146
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig9854.22692.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LTX1_ECTSI2.720e-1751.61Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig9854contigM-pyrifera_M_contig9854:413..1701 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-12_004010.1
Exons2
Model size559
Cds size363
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig9854.22692.1prot_M-pyrifera_M_contig9854.22692.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig9854 413..1505 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816902.7521865-CDS-M-pyrifera_M_contig9854:412..5311622816902.7521865-CDS-M-pyrifera_M_contig9854:412..531Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9854 413..531 +
1692278245.8780932-CDS-M-pyrifera_M_contig9854:412..5311692278245.8780932-CDS-M-pyrifera_M_contig9854:412..531Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9854 413..531 +
1622816902.763898-CDS-M-pyrifera_M_contig9854:1261..15051622816902.763898-CDS-M-pyrifera_M_contig9854:1261..1505Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9854 1262..1505 +
1692278245.8927138-CDS-M-pyrifera_M_contig9854:1261..15051692278245.8927138-CDS-M-pyrifera_M_contig9854:1261..1505Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9854 1262..1505 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816902.7751944-UTR-M-pyrifera_M_contig9854:1505..17011622816902.7751944-UTR-M-pyrifera_M_contig9854:1505..1701Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig9854 1506..1701 +
1692278245.9032543-UTR-M-pyrifera_M_contig9854:1505..17011692278245.9032543-UTR-M-pyrifera_M_contig9854:1505..1701Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig9854 1506..1701 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig9854.22692.1

>prot_M-pyrifera_M_contig9854.22692.1 ID=prot_M-pyrifera_M_contig9854.22692.1|Name=mRNA_M-pyrifera_M_contig9854.22692.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=121bp
RQTGLVTTKRKAAKRALLEAPSKRRGGSGGATSTARKSGSKTVSKKGRKK
NGRAVGLLEQARLELRGKSQAARNVSLLSYVRGKEGTKTRTGKLTVSKSQ
KAVEKLLVLDGSKARTKAFP*
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mRNA from alignment at M-pyrifera_M_contig9854:413..1701+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig9854.22692.1 ID=mRNA_M-pyrifera_M_contig9854.22692.1|Name=mRNA_M-pyrifera_M_contig9854.22692.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1289bp|location=Sequence derived from alignment at M-pyrifera_M_contig9854:413..1701+ (Macrocystis pyrifera P11B4 male)
CGACAGACTGGACTTGTCACCACCAAGCGAAAAGCGGCCAAGCGAGCGCT
TCTCGAGGCGCCGTCCAAGCGGCGCGGCGGCAGCGGCGGGGCGACCTCAA
CAGCGCGCAAGTCTGGAAGGTATTCATAGCAGCAACAGCAACAGCAACAG
CGACAGCAACAACACGAGTAGAACGTGTTTACCTCTCTCTCGTGCCTCGA
TTTCATGCATGCAGCACCGCGTTTCTTGGGGCACCGCGTTGCTGAAACGA
TCGCGTTCACGCGGGCCCCGATGAAGGAAAAAGAAGGGTAAGCACCCTAA
AAAAGAAACTAACCTGTTGTGTAAATATGTACTACCAACAAATGACATGC
TCCGCACAATGTTGAGGGTGTTGCGAATGATTCAATGACTGGGGCGGTTG
GAGGGAGGCATTGTGTAGGGAGAAAAACAGAAAAACAATACCCTCCTGCT
TTCATATTTCCTCTCGATAATCTTGCCGCCTTCATCGCCCTCCAACGTTT
TGACACGGCTCATTCTTTTACGAATCAACCGCCAGCCATACCCAACTACC
GGTACCGGTCGGTGCGTACCTCCTCGGTTTCTCTTTTTTCCGAAAGCAGG
TAAAATCAGCCTTCGACGTAGAAACCGAACTAGCAGAGGAGTTTTTCCCC
GGACCGCCCGCAATAAAAACGTCACCAGATATATATACCGGTATATAAAT
GTATGTATGGTAAGCAGCTTCCCGGGACATAGTCGAGGATCAACAGACCG
AAGAATACAAGGAGAAACGTATCGAATTAAACCTGTCTGCTCTTTGTTTT
TGTACCCTTCTGTCCGTATCACACCACGACGCCTGCCTTCTCGTACCAGC
AAAACCGTGTCGAAGAAGGGGAGAAAAAAAAACGGCCGGGCGGTCGGCCT
CCTCGAGCAGGCGCGGCTGGAGCTCCGCGGCAAGTCCCAGGCGGCGCGGA
ACGTGAGCCTGCTGTCGTACGTCCGCGGGAAAGAGGGGACAAAGACAAGG
ACGGGCAAGCTCACCGTCAGCAAGTCGCAGAAAGCTGTGGAGAAGCTGCT
AGTATTGGATGGCAGCAAAGCGCGAACGAAGGCGTTTCCATAGCAAAGGC
TACGTACCGACAGTTGCTCTTTCGGGGGCGAGCATAGTTGTCAGAACCAA
ATATAGTTTATGTAAGCATCTAATGTGGCGTGTGGGTCCATCATGGCCTC
TGAATGCTGTGGTTCCCTCGTGACAGCAGTGGTGTTACGGCATCGGGGGC
TGCGAAAAGCGTGATATTTTGAAAAAGAGTATTATTTGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig9854:413..1701+

>mRNA_M-pyrifera_M_contig9854.22692.1 ID=mRNA_M-pyrifera_M_contig9854.22692.1|Name=mRNA_M-pyrifera_M_contig9854.22692.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=726bp|location=Sequence derived from alignment at M-pyrifera_M_contig9854:413..1701+ (Macrocystis pyrifera P11B4 male)
CGACAGACTGGACTTGTCACCACCAAGCGAAAAGCGGCCAAGCGAGCGCT
TCTCGAGGCGCCGTCCAAGCGGCGCGGCGGCAGCGGCGGGGCGACCTCAA
CAGCGCGCAAGTCTGGAAGCGACAGACTGGACTTGTCACCACCAAGCGAA
AAGCGGCCAAGCGAGCGCTTCTCGAGGCGCCGTCCAAGCGGCGCGGCGGC
AGCGGCGGGGCGACCTCAACAGCGCGCAAGTCTGGAAGCAAAACCGTGTC
GAAGAAGGGGAGAAAAAAAAACGGCCGGGCGGTCGGCCTCCTCGAGCAGG
CGCGGCTGGAGCTCCGCGGCAAGTCCCAGGCGGCGCGGAACGTGAGCCTG
CTGTCGTACGTCCGCGGGAAAGAGGGGACAAAGACAAGGACGGGCAAGCT
CACCGTCAGCAAGTCGCAGAAAGCTGTGGAGAAGCTGCTAGTATTGGATG
GCAGCAAAGCGCGAACGAAGGCGTTTCCATAGCAAAACCGTGTCGAAGAA
GGGGAGAAAAAAAAACGGCCGGGCGGTCGGCCTCCTCGAGCAGGCGCGGC
TGGAGCTCCGCGGCAAGTCCCAGGCGGCGCGGAACGTGAGCCTGCTGTCG
TACGTCCGCGGGAAAGAGGGGACAAAGACAAGGACGGGCAAGCTCACCGT
CAGCAAGTCGCAGAAAGCTGTGGAGAAGCTGCTAGTATTGGATGGCAGCA
AAGCGCGAACGAAGGCGTTTCCATAG
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