mRNA_M-pyrifera_M_contig9853.22691.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig9853.22691.1
Unique NamemRNA_M-pyrifera_M_contig9853.22691.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig9853.22691.1 vs. uniprot
Match: A0A535F797_9CHLR (DDE-type integrase/transposase/recombinase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A535F797_9CHLR)

HSP 1 Score: 60.1 bits (144), Expect = 1.810e-7
Identity = 48/149 (32.21%), Postives = 68/149 (45.64%), Query Frame = 1
Query:   61 TLVGKCHRCGKKGHWKSECTAKLCSRCQGRGHSANASFKAEETGKCSDGSGEGE-SAW-----------QVGDEAWICDSGASTHMMPSADCMVNYRECNLTLRIADGFTQAIEGYGDVSVVFRSGNGLVQVLLTNVAHVPDLRYHLFS 471
            T  G C+ CGK GH+K EC A+L    +  G S     K + +        EGE  AW           Q+G + W  DS A+ HM    D  V+Y+     + IADG    + G GDV +  +  N +VQ+   +V + P L  +L S
Sbjct:  211 TGKGACYYCGKLGHFKRECRARLK---ENAGESREIEQKGDHSAAAVSAESEGEIRAWTAYTQAPKDKAQIGQDLWYLDSAATAHMTHLRDAFVSYKGYKDNITIADGTQIPVLGRGDVQI--QVNNEVVQI--HDVLYAPKLAGNLVS 352          
BLAST of mRNA_M-pyrifera_M_contig9853.22691.1 vs. uniprot
Match: A0A0D7BDN6_9AGAR (Uncharacterized protein n=1 Tax=Cylindrobasidium torrendii FP15055 ss-10 TaxID=1314674 RepID=A0A0D7BDN6_9AGAR)

HSP 1 Score: 59.7 bits (143), Expect = 2.400e-7
Identity = 45/135 (33.33%), Postives = 67/135 (49.63%), Query Frame = 1
Query:   73 KCHRCGKKGHWKSECTAK--LCSRCQGRGHSANASFKAEETGKCSDGSGEGESAWQVGDEAWICDSGASTHMMPSADCMVNYRECNLTLRIADGFTQAIEGYGDVSVVFRSGNGLVQVLLTNVAHVPDLRYHLFS 471
            KC  CGK GH + +C  K     R Q +G+ ++ S   E     S      ++   +  + WI D+GA+ HM P      +Y      +++AD     I G G  SVVF +  G V++ +T+V HVP LR +LFS
Sbjct:  214 KCTFCGKPGHTEDDCWTKQKAIKRLQDQGNGSHLSMPTERASLASSD----DNCSPISSD-WIVDTGATRHMTPHRPWFTSYARKTTPIQLADN--SIIYGEGVGSVVFTTQEG-VELEITDVLHVPQLRNNLFS 340          
BLAST of mRNA_M-pyrifera_M_contig9853.22691.1 vs. uniprot
Match: A0A2X0M8I4_9BASI (BZ3500_MvSof-1268-A1-R1_C155g00803 protein n=1 Tax=Microbotryum saponariae TaxID=289078 RepID=A0A2X0M8I4_9BASI)

HSP 1 Score: 55.1 bits (131), Expect = 9.260e-6
Identity = 47/153 (30.72%), Postives = 68/153 (44.44%), Query Frame = 1
Query:   55 ESTLVGKCHRCGKKGHWKSECTAKLCSRCQGRGHSANASFKAEETGKCSDGSGEGESAW--------QVGDEAWICDSGASTHMMPSADCMVNYRECNLTL--RIADGFTQAIEGYGDVSVVFRSGNGLVQVLLTNVAHVPDLRYHLFSLPTL 483
            E+   G C RC KKGHW  +C        + RG  A +S   ++    S  S      +        Q+  +A++ DSGA+THM+        YR+   T    IA G T    G GDV+ V ++G+    + L  V H P L  +L S+  L
Sbjct:  230 EAPATGPCRRCHKKGHWALDC--------KNRGEQARSSDDTQDDTSSSAASQPNVGYFASCLFARRQLPTDAFVVDSGATTHMVADRSLFTTYRQTAHTKIGGIAGGITAI--GMGDVAFVAKTGH---PITLRGVLHTPGLHVNLLSVSRL 369          
BLAST of mRNA_M-pyrifera_M_contig9853.22691.1 vs. uniprot
Match: A0A2X0KHY7_9BASI (BZ3500_MvSof-1268-A1-R1_C076g00399 protein n=1 Tax=Microbotryum saponariae TaxID=289078 RepID=A0A2X0KHY7_9BASI)

HSP 1 Score: 53.5 bits (127), Expect = 3.180e-5
Identity = 46/149 (30.87%), Postives = 66/149 (44.30%), Query Frame = 1
Query:   67 VGKCHRCGKKGHWKSECTAKLCSRCQGRGHSANASFKAEETGKCSDGSGEGESAW--------QVGDEAWICDSGASTHMMPSADCMVNYRECNLTL--RIADGFTQAIEGYGDVSVVFRSGNGLVQVLLTNVAHVPDLRYHLFSLPTL 483
             G C RC KKGHW  +C        + RG  A +S   ++    S  S      +        Q+  +A++ DSGA+THM+        YR+   T    IA G T    G GDV+ V ++G+    + L  V H P L  +L S+  L
Sbjct:  261 TGPCRRCHKKGHWALDC--------KNRGEQARSSDDTQDDTSSSAASQPNVGYFASCLFARRQLPTDAFVVDSGATTHMVADRSLFTTYRQTAHTKIGGIAGGITAI--GMGDVAFVAKTGH---PITLRGVLHTPGLHVNLLSVSRL 396          
BLAST of mRNA_M-pyrifera_M_contig9853.22691.1 vs. uniprot
Match: A0A2X0KNE0_9BASI (BZ3500_MvSof-1268-A1-R1_C062g00289 protein n=1 Tax=Microbotryum saponariae TaxID=289078 RepID=A0A2X0KNE0_9BASI)

HSP 1 Score: 53.5 bits (127), Expect = 3.320e-5
Identity = 46/149 (30.87%), Postives = 66/149 (44.30%), Query Frame = 1
Query:   67 VGKCHRCGKKGHWKSECTAKLCSRCQGRGHSANASFKAEETGKCSDGSGEGESAW--------QVGDEAWICDSGASTHMMPSADCMVNYRECNLTL--RIADGFTQAIEGYGDVSVVFRSGNGLVQVLLTNVAHVPDLRYHLFSLPTL 483
             G C RC KKGHW  +C        + RG  A +S   ++    S  S      +        Q+  +A++ DSGA+THM+        YR+   T    IA G T    G GDV+ V ++G+    + L  V H P L  +L S+  L
Sbjct:  278 TGPCRRCHKKGHWALDC--------KNRGEQARSSDDTQDDTSSSAASQPNVGYFASCLFARRQLPTDAFVVDSGATTHMVADRSLFTTYRQTAHTKIGGIAGGITAI--GMGDVAFVAKTGH---PITLRGVLHTPGLHVNLLSVSRL 413          
BLAST of mRNA_M-pyrifera_M_contig9853.22691.1 vs. uniprot
Match: A0A2X0N8L0_9BASI (BZ3500_MvSof-1268-A1-R1_C131g00708 protein n=3 Tax=Microbotryum saponariae TaxID=289078 RepID=A0A2X0N8L0_9BASI)

HSP 1 Score: 53.5 bits (127), Expect = 3.330e-5
Identity = 46/149 (30.87%), Postives = 66/149 (44.30%), Query Frame = 1
Query:   67 VGKCHRCGKKGHWKSECTAKLCSRCQGRGHSANASFKAEETGKCSDGSGEGESAW--------QVGDEAWICDSGASTHMMPSADCMVNYRECNLTL--RIADGFTQAIEGYGDVSVVFRSGNGLVQVLLTNVAHVPDLRYHLFSLPTL 483
             G C RC KKGHW  +C        + RG  A +S   ++    S  S      +        Q+  +A++ DSGA+THM+        YR+   T    IA G T    G GDV+ V ++G+    + L  V H P L  +L S+  L
Sbjct: 1383 TGPCRRCHKKGHWALDC--------KNRGEQARSSDDTQDDTSSSAASQPNVGYFASCLFARRQLPTDAFVVDSGATTHMVADRSLFTTYRQTAHTKIGGIAGGITAI--GMGDVAFVAKTGH---PITLRGVLHTPGLHVNLLSVSRL 1518          
BLAST of mRNA_M-pyrifera_M_contig9853.22691.1 vs. uniprot
Match: A0A2X0LEZ3_9BASI (BZ3500_MvSof-1268-A1-R1_C134g00723 protein n=1 Tax=Microbotryum saponariae TaxID=289078 RepID=A0A2X0LEZ3_9BASI)

HSP 1 Score: 53.5 bits (127), Expect = 3.370e-5
Identity = 46/149 (30.87%), Postives = 66/149 (44.30%), Query Frame = 1
Query:   67 VGKCHRCGKKGHWKSECTAKLCSRCQGRGHSANASFKAEETGKCSDGSGEGESAW--------QVGDEAWICDSGASTHMMPSADCMVNYRECNLTL--RIADGFTQAIEGYGDVSVVFRSGNGLVQVLLTNVAHVPDLRYHLFSLPTL 483
             G C RC KKGHW  +C        + RG  A +S   ++    S  S      +        Q+  +A++ DSGA+THM+        YR+   T    IA G T    G GDV+ V ++G+    + L  V H P L  +L S+  L
Sbjct:  634 TGPCRRCHKKGHWALDC--------KNRGEQARSSDDTQDDTSSSAASQPNVGYFASCLFARRQLPTDAFVVDSGATTHMVADRSLFTTYRQTAHTKIGGIAGGITAI--GMGDVAFVAKTGH---PITLRGVLHTPGLHVNLLSVSRL 769          
BLAST of mRNA_M-pyrifera_M_contig9853.22691.1 vs. uniprot
Match: A0A5S6QXX5_TRIMR (CCHC-type domain-containing protein n=1 Tax=Trichuris muris TaxID=70415 RepID=A0A5S6QXX5_TRIMR)

HSP 1 Score: 52.0 bits (123), Expect = 9.390e-5
Identity = 47/150 (31.33%), Postives = 70/150 (46.67%), Query Frame = 1
Query:   55 ESTLVGKCHRCGKKGHWKSECTAKLCSRCQGRGHSANASFKAEETGKCSDGSGEGESAWQVGDEAWICDSGASTHMMPSADCMVNYRECNLT---LRIADGFTQAIEGYGDVSVVFRSGNGLVQVLLT-NVAHVPDLRYHLFSLPTLVKN 492
            +STLV  C RCGK GH+ SECT+K     +   H   A+ K  +T  C+  +  G +        WI DSGA+ HM P         + ++T   +R ADG T      G V V      G++   +  N   VP ++  + S+  +V+N
Sbjct:  229 KSTLV--CFRCGKLGHFASECTSKAPKSLK---HPKAATGKQPKTRPCNMFASYG-TCTDNKSICWIVDSGATHHMCPDKRYFTRLGKADVTNSRVRTADGSTTLTAEKGTVMVRLLRNKGMLDKFVAHNTLLVPGIKQGVLSVRQMVEN 372          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig9853.22691.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A535F797_9CHLR1.810e-732.21DDE-type integrase/transposase/recombinase n=1 Tax... [more]
A0A0D7BDN6_9AGAR2.400e-733.33Uncharacterized protein n=1 Tax=Cylindrobasidium t... [more]
A0A2X0M8I4_9BASI9.260e-630.72BZ3500_MvSof-1268-A1-R1_C155g00803 protein n=1 Tax... [more]
A0A2X0KHY7_9BASI3.180e-530.87BZ3500_MvSof-1268-A1-R1_C076g00399 protein n=1 Tax... [more]
A0A2X0KNE0_9BASI3.320e-530.87BZ3500_MvSof-1268-A1-R1_C062g00289 protein n=1 Tax... [more]
A0A2X0N8L0_9BASI3.330e-530.87BZ3500_MvSof-1268-A1-R1_C131g00708 protein n=3 Tax... [more]
A0A2X0LEZ3_9BASI3.370e-530.87BZ3500_MvSof-1268-A1-R1_C134g00723 protein n=1 Tax... [more]
A0A5S6QXX5_TRIMR9.390e-531.33CCHC-type domain-containing protein n=1 Tax=Trichu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig9853contigM-pyrifera_M_contig9853:9865..10512 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score77.4
Seed ortholog evalue6.9e-12
Seed eggNOG ortholog164328.Phyra87135
Hectar predicted targeting categoryother localisation
EggNOG free text desc.GAG-pre-integrase domain
EggNOG OGs3QH4V@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons2
Model size495
Cds size495
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816902.7087815-CDS-M-pyrifera_M_contig9853:9864..100331622816902.7087815-CDS-M-pyrifera_M_contig9853:9864..10033Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9853 9865..10033 +
1692278245.856158-CDS-M-pyrifera_M_contig9853:9864..100331692278245.856158-CDS-M-pyrifera_M_contig9853:9864..10033Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9853 9865..10033 +
1622816902.720552-CDS-M-pyrifera_M_contig9853:10186..105121622816902.720552-CDS-M-pyrifera_M_contig9853:10186..10512Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9853 10187..10512 +
1692278245.867871-CDS-M-pyrifera_M_contig9853:10186..105121692278245.867871-CDS-M-pyrifera_M_contig9853:10186..10512Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9853 10187..10512 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig9853.22691.1prot_M-pyrifera_M_contig9853.22691.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig9853 9865..10512 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig9853.22691.1

>prot_M-pyrifera_M_contig9853.22691.1 ID=prot_M-pyrifera_M_contig9853.22691.1|Name=mRNA_M-pyrifera_M_contig9853.22691.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=165bp
GGLAAAAGGNGSSSKAARESTLVGKCHRCGKKGHWKSECTAKLCSRCQGR
GHSANASFKAEETGKCSDGSGEGESAWQVGDEAWICDSGASTHMMPSADC
MVNYRECNLTLRIADGFTQAIEGYGDVSVVFRSGNGLVQVLLTNVAHVPD
LRYHLFSLPTLVKNV
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mRNA from alignment at M-pyrifera_M_contig9853:9865..10512+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig9853.22691.1 ID=mRNA_M-pyrifera_M_contig9853.22691.1|Name=mRNA_M-pyrifera_M_contig9853.22691.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=648bp|location=Sequence derived from alignment at M-pyrifera_M_contig9853:9865..10512+ (Macrocystis pyrifera P11B4 male)
GGTGGCTTGGCCGCGGCTGCTGGTGGCAATGGCAGCAGCTCCAAAGCCGC CCGCGAAAGCACTCTAGTGGGCAAGTGTCATAGATGTGGCAAGAAGGGCC ATTGGAAGAGCGAGTGCACGGCGAAGCTATGCAGCCGATGCCAAGGACGT GGGCACTCCGCCAATGCCTGTCCCACGTCCATGGATCGATGCAGTCGATG CAACGGGCGGGGGCACGCTGCTGATGTCTGCTCCTCATCGAAAGAAGAAG CTGTCATGGCGGTGACGAGCGAGGCTGGGGCAAGGGACGACGACCAAGAA AAAAGTACGGTCCAGGCCTCAGCTTTCAAGGCCGAAGAGACAGGCAAGTG CAGCGATGGTTCAGGGGAAGGGGAGTCTGCTTGGCAGGTAGGAGACGAGG CCTGGATATGCGATAGTGGTGCGTCTACTCACATGATGCCCTCCGCAGAC TGCATGGTAAACTACAGAGAATGCAACTTGACTCTCCGAATCGCTGACGG ATTCACTCAAGCGATCGAAGGTTACGGCGACGTGAGCGTTGTTTTTCGGT CCGGAAACGGTCTCGTGCAAGTGCTGCTTACGAACGTTGCGCACGTGCCG GATCTCCGCTACCACTTGTTTTCCCTGCCCACTCTCGTCAAAAACGTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig9853:9865..10512+

>mRNA_M-pyrifera_M_contig9853.22691.1 ID=mRNA_M-pyrifera_M_contig9853.22691.1|Name=mRNA_M-pyrifera_M_contig9853.22691.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=990bp|location=Sequence derived from alignment at M-pyrifera_M_contig9853:9865..10512+ (Macrocystis pyrifera P11B4 male)
GGTGGCTTGGCCGCGGCTGCTGGTGGCAATGGCAGCAGCTCCAAAGCCGC
CCGCGAAAGCACTCTAGTGGGCAAGTGTCATAGATGTGGCAAGAAGGGCC
ATTGGAAGAGCGAGTGCACGGCGAAGCTATGCAGCCGATGCCAAGGACGT
GGGCACTCCGCCAATGCCTGGTGGCTTGGCCGCGGCTGCTGGTGGCAATG
GCAGCAGCTCCAAAGCCGCCCGCGAAAGCACTCTAGTGGGCAAGTGTCAT
AGATGTGGCAAGAAGGGCCATTGGAAGAGCGAGTGCACGGCGAAGCTATG
CAGCCGATGCCAAGGACGTGGGCACTCCGCCAATGCCTCTTTCAAGGCCG
AAGAGACAGGCAAGTGCAGCGATGGTTCAGGGGAAGGGGAGTCTGCTTGG
CAGGTAGGAGACGAGGCCTGGATATGCGATAGTGGTGCGTCTACTCACAT
GATGCCCTCCGCAGACTGCATGGTAAACTACAGAGAATGCAACTTGACTC
TCCGAATCGCTGACGGATTCACTCAAGCGATCGAAGGTTACGGCGACGTG
AGCGTTGTTTTTCGGTCCGGAAACGGTCTCGTGCAAGTGCTGCTTACGAA
CGTTGCGCACGTGCCGGATCTCCGCTACCACTTGTTTTCCCTGCCCACTC
TCGTCAAAAACGTCCTTTCAAGGCCGAAGAGACAGGCAAGTGCAGCGATG
GTTCAGGGGAAGGGGAGTCTGCTTGGCAGGTAGGAGACGAGGCCTGGATA
TGCGATAGTGGTGCGTCTACTCACATGATGCCCTCCGCAGACTGCATGGT
AAACTACAGAGAATGCAACTTGACTCTCCGAATCGCTGACGGATTCACTC
AAGCGATCGAAGGTTACGGCGACGTGAGCGTTGTTTTTCGGTCCGGAAAC
GGTCTCGTGCAAGTGCTGCTTACGAACGTTGCGCACGTGCCGGATCTCCG
CTACCACTTGTTTTCCCTGCCCACTCTCGTCAAAAACGTC
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