mRNA_M-pyrifera_M_contig98523.22689.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig98523.22689.1
Unique NamemRNA_M-pyrifera_M_contig98523.22689.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig98523.22689.1 vs. uniprot
Match: UPI001903BFF0 (DUF309 domain-containing protein n=1 Tax=Rhodovibrio sodomensis TaxID=1088 RepID=UPI001903BFF0)

HSP 1 Score: 54.3 bits (129), Expect = 3.060e-7
Identity = 26/48 (54.17%), Postives = 31/48 (64.58%), Query Frame = 1
Query:   46 FRLGFELCAAGREWDAHEVWEELWKARRGTPDGALLRGLIQWAAAGVK 189
            F  G +L  AG  W+AHE WE+LW+A       ALL GLI+ AAAGVK
Sbjct:   64 FLWGVDLYNAGYYWEAHEAWEDLWRAAGDGAAAALLHGLIKLAAAGVK 111          
BLAST of mRNA_M-pyrifera_M_contig98523.22689.1 vs. uniprot
Match: D2QWQ8_PIRSD (Uncharacterized protein n=1 Tax=Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB 4128) TaxID=530564 RepID=D2QWQ8_PIRSD)

HSP 1 Score: 53.5 bits (127), Expect = 8.880e-7
Identity = 29/57 (50.88%), Postives = 37/57 (64.91%), Query Frame = 1
Query:   46 FRLGFELCAAGREWDAHEVWEELWK-ARRGTPDGALLRGLIQWAAAGVKLKAERLSG 213
            ++ G +L  AG  W+AHEVWE LWK A RG+ +  LL  LI+ AAAGVK +  R  G
Sbjct:   56 YQKGIDLFNAGYYWEAHEVWESLWKVALRGSCEQTLLLLLIKLAAAGVKAREGRAVG 112          
BLAST of mRNA_M-pyrifera_M_contig98523.22689.1 vs. uniprot
Match: A0A7W1G1Y0_9BACT (DUF309 domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7W1G1Y0_9BACT)

HSP 1 Score: 52.8 bits (125), Expect = 8.930e-7
Identity = 30/58 (51.72%), Postives = 36/58 (62.07%), Query Frame = 1
Query:   55 GFELCAAGREWDAHEVWEELWKARRGTPDGALLRGLIQWAAAGVKLKAERLSGALSLV 228
            G  L  AG  WDAHE WE LWKA RG+ D   L+GLIQ+AAA   L+   L  A +L+
Sbjct:   14 GVRLFDAGAFWDAHEAWEHLWKADRGS-DRHYLKGLIQYAAACHHLERGNLRPARTLL 70          
BLAST of mRNA_M-pyrifera_M_contig98523.22689.1 vs. uniprot
Match: A0A2V9ZEI9_9BACT (DUF309 domain-containing protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V9ZEI9_9BACT)

HSP 1 Score: 52.0 bits (123), Expect = 1.170e-6
Identity = 28/67 (41.79%), Postives = 39/67 (58.21%), Query Frame = 1
Query:   34 DLEGFRLGFELCAAGREWDAHEVWEELWKARRGTPDGALLRGLIQWAAAGVKLKAERLSGALSLVDK 234
            ++EGF  G  L  AG  ++AHEVWE++W+     P+   L+GLIQ A A        L GA SL+D+
Sbjct:    2 EIEGFARGIRLFNAGEFFEAHEVWEDVWRVAP-EPERKFLQGLIQIAVAFHHRSTGNLVGAASLMDR 67          
BLAST of mRNA_M-pyrifera_M_contig98523.22689.1 vs. uniprot
Match: UPI00048802C2 (DUF309 domain-containing protein n=1 Tax=Rhodovibrio salinarum TaxID=1087 RepID=UPI00048802C2)

HSP 1 Score: 53.1 bits (126), Expect = 1.240e-6
Identity = 25/48 (52.08%), Postives = 30/48 (62.50%), Query Frame = 1
Query:   46 FRLGFELCAAGREWDAHEVWEELWKARRGTPDGALLRGLIQWAAAGVK 189
            F  G +L  AG  W+AHE WE+LW+A        LL GLI+ AAAGVK
Sbjct:   64 FLWGIDLFNAGYAWEAHEAWEDLWRAADRPEAAELLHGLIKLAAAGVK 111          
BLAST of mRNA_M-pyrifera_M_contig98523.22689.1 vs. uniprot
Match: A0A5S9IRM7_9BACT (Uncharacterized protein n=1 Tax=Candidatus Uabimicrobium amorphum TaxID=2596890 RepID=A0A5S9IRM7_9BACT)

HSP 1 Score: 53.1 bits (126), Expect = 1.320e-6
Identity = 30/67 (44.78%), Postives = 40/67 (59.70%), Query Frame = 1
Query:   46 FRLGFELCAAGREWDAHEVWEELWKAR-RGTPDGALLRGLIQWAAAGVKLKAERLSGALSLVDKALA 243
            +  G +L   G  W++HE WE LW A  R T  G  ++GLIQ AAA +KL  ++LSG  SL  K+ A
Sbjct:   64 YLYGIDLYHHGYFWESHEAWEGLWNAYGRETIPGKFMQGLIQNAAAQIKLHKKQLSGVCSLSKKSWA 130          
BLAST of mRNA_M-pyrifera_M_contig98523.22689.1 vs. uniprot
Match: A0A7C3RYQ8_9BACT (DUF309 domain-containing protein n=1 Tax=bacterium TaxID=1869227 RepID=A0A7C3RYQ8_9BACT)

HSP 1 Score: 49.7 bits (117), Expect = 1.050e-5
Identity = 29/69 (42.03%), Postives = 39/69 (56.52%), Query Frame = 1
Query:   31 SDLEGFRLGFELCAAGREWDAHEVWEELWKARRGTPDGALLRGLIQWAAAGVKLKAERLSGALSLVDKA 237
            +D E F  G EL  AGR ++ HE WE++WK++ G       +G+IQ AAA +       SGA SL  KA
Sbjct:    5 ADEERFEQGVELFNAGRFFECHEAWEDVWKSQSGEQK-LFTQGMIQAAAALLHASRGNRSGAASLYAKA 72          
BLAST of mRNA_M-pyrifera_M_contig98523.22689.1 vs. uniprot
Match: A0A7C7YUT5_9BACT (DUF309 domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7C7YUT5_9BACT)

HSP 1 Score: 50.4 bits (119), Expect = 2.540e-5
Identity = 27/69 (39.13%), Postives = 37/69 (53.62%), Query Frame = 1
Query:   40 EGFRLGFELCAAGREWDAHEVWEELWKARRGTP-DGALLRGLIQWAAAGVKLKAERLSGALSLVDKALA 243
            E +R G +L   G  W+AHE WE +W A R        ++GLIQ AAA +KL+ +   GA  L  +  A
Sbjct:  225 EDYRFGLDLYNHGYLWEAHEAWEAIWHAARSDELQAEFIQGLIQCAAAMLKLRMQEPRGASKLATQGTA 293          
BLAST of mRNA_M-pyrifera_M_contig98523.22689.1 vs. uniprot
Match: A0A7C1WFI8_9BACT (DUF309 domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7C1WFI8_9BACT)

HSP 1 Score: 48.5 bits (114), Expect = 5.580e-5
Identity = 25/59 (42.37%), Postives = 34/59 (57.63%), Query Frame = 1
Query:   40 EGFRLGFELCAAGREWDAHEVWEELWKARRGTP-DGALLRGLIQWAAAGVKLKAERLSG 213
            E +  G +L   G  W+AHE WE +W A RG       L+GLIQ AAA +K++ E+  G
Sbjct:   50 EDYLFGVDLYNEGFLWEAHEAWEGIWMAARGDELQATFLQGLIQCAAACLKIRMEQPRG 108          
BLAST of mRNA_M-pyrifera_M_contig98523.22689.1 vs. uniprot
Match: UPI00199A9669 (DUF309 domain-containing protein n=1 Tax=Chelatococcus reniformis TaxID=1494448 RepID=UPI00199A9669)

HSP 1 Score: 48.1 bits (113), Expect = 9.240e-5
Identity = 30/72 (41.67%), Postives = 37/72 (51.39%), Query Frame = 1
Query:   31 SDLEGFRLGFELCAAGREWDAHEVWEELWKAR-RGTPDGALLRGLIQWAAAGVKLKAERLSGALSLVDKALA 243
            +D  G R G  L  AG  W+AHEVWE +WKA      D   LR  IQ A  G+K +  R      LV +A+A
Sbjct:   53 ADDAGLRYGLSLHDAGFFWEAHEVWEAVWKAAPMNGRDRLALRAAIQIANGGLKRRLGRPRAVRRLVAEAMA 124          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig98523.22689.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
UPI001903BFF03.060e-754.17DUF309 domain-containing protein n=1 Tax=Rhodovibr... [more]
D2QWQ8_PIRSD8.880e-750.88Uncharacterized protein n=1 Tax=Pirellula staleyi ... [more]
A0A7W1G1Y0_9BACT8.930e-751.72DUF309 domain-containing protein n=1 Tax=Planctomy... [more]
A0A2V9ZEI9_9BACT1.170e-641.79DUF309 domain-containing protein n=1 Tax=Acidobact... [more]
UPI00048802C21.240e-652.08DUF309 domain-containing protein n=1 Tax=Rhodovibr... [more]
A0A5S9IRM7_9BACT1.320e-644.78Uncharacterized protein n=1 Tax=Candidatus Uabimic... [more]
A0A7C3RYQ8_9BACT1.050e-542.03DUF309 domain-containing protein n=1 Tax=bacterium... [more]
A0A7C7YUT5_9BACT2.540e-539.13DUF309 domain-containing protein n=1 Tax=Planctomy... [more]
A0A7C1WFI8_9BACT5.580e-542.37DUF309 domain-containing protein n=1 Tax=Planctomy... [more]
UPI00199A96699.240e-541.67DUF309 domain-containing protein n=1 Tax=Chelatoco... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig98523contigM-pyrifera_M_contig98523:108..350 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size243
Cds size243
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816902.6356406-CDS-M-pyrifera_M_contig98523:107..3501622816902.6356406-CDS-M-pyrifera_M_contig98523:107..350Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig98523 108..350 -
1692278245.8296437-CDS-M-pyrifera_M_contig98523:107..3501692278245.8296437-CDS-M-pyrifera_M_contig98523:107..350Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig98523 108..350 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig98523.22689.1prot_M-pyrifera_M_contig98523.22689.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig98523 108..350 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig98523.22689.1

>prot_M-pyrifera_M_contig98523.22689.1 ID=prot_M-pyrifera_M_contig98523.22689.1|Name=mRNA_M-pyrifera_M_contig98523.22689.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=81bp
MRRGELGQAASDLEGFRLGFELCAAGREWDAHEVWEELWKARRGTPDGAL
LRGLIQWAAAGVKLKAERLSGALSLVDKALA
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mRNA from alignment at M-pyrifera_M_contig98523:108..350-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig98523.22689.1 ID=mRNA_M-pyrifera_M_contig98523.22689.1|Name=mRNA_M-pyrifera_M_contig98523.22689.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=243bp|location=Sequence derived from alignment at M-pyrifera_M_contig98523:108..350- (Macrocystis pyrifera P11B4 male)
ATGCGCCGTGGTGAGCTGGGGCAAGCGGCGTCGGACCTCGAGGGGTTTCG GCTGGGCTTCGAGCTCTGTGCGGCGGGGCGCGAGTGGGACGCGCACGAGG TGTGGGAAGAGCTGTGGAAGGCGCGTCGGGGCACGCCGGACGGGGCGCTG TTGCGGGGGCTGATCCAGTGGGCGGCGGCGGGCGTCAAGCTGAAGGCCGA GCGGCTGAGCGGTGCGCTGAGCTTGGTCGACAAGGCGCTCGCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig98523:108..350-

>mRNA_M-pyrifera_M_contig98523.22689.1 ID=mRNA_M-pyrifera_M_contig98523.22689.1|Name=mRNA_M-pyrifera_M_contig98523.22689.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=486bp|location=Sequence derived from alignment at M-pyrifera_M_contig98523:108..350- (Macrocystis pyrifera P11B4 male)
ATGCGCCGTGGTGAGCTGGGGCAAGCGGCGTCGGACCTCGAGGGGTTTCG
GCTGGGCTTCGAGCTCTGTGCGGCGGGGCGCGAGTGGGACGCGCACGAGG
TGTGGGAAGAGCTGTGGAAGGCGCGTCGGGGCACGCCGGACGGGGCGCTG
TTGCGGGGGCTGATCCAGTGGGCGGCGGCGGGCGTCAAGCTGAAGGCCGA
GCGGCTGAGCGGTGCGCTGAGCTTGGTCGACAAGGCGCTCGCGATGCGCC
GTGGTGAGCTGGGGCAAGCGGCGTCGGACCTCGAGGGGTTTCGGCTGGGC
TTCGAGCTCTGTGCGGCGGGGCGCGAGTGGGACGCGCACGAGGTGTGGGA
AGAGCTGTGGAAGGCGCGTCGGGGCACGCCGGACGGGGCGCTGTTGCGGG
GGCTGATCCAGTGGGCGGCGGCGGGCGTCAAGCTGAAGGCCGAGCGGCTG
AGCGGTGCGCTGAGCTTGGTCGACAAGGCGCTCGCG
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