mRNA_M-pyrifera_M_contig98519.22687.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig98519.22687.1
Unique NamemRNA_M-pyrifera_M_contig98519.22687.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig98519.22687.1 vs. uniprot
Match: A0A7X6AQY3_9ACTN (Uncharacterized protein (Fragment) n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X6AQY3_9ACTN)

HSP 1 Score: 205 bits (521), Expect = 1.070e-63
Identity = 104/179 (58.10%), Postives = 124/179 (69.27%), Query Frame = 1 
Query:    7 IGIWMIRSLLQHRGRSVGIERAASAAGMDYRSEDGHGLSKVAFQHMARGDGRGWTASHVVTHTSRDGAKIHAFDVRSWTEYA-------------------------------HQGATRSAAMAPLPITAPQLVIGRENVVSKLFATATRIDLDVESEMFNRSYHVIGQDRAFARELLD 450
            +G+WMIRS+L HRGR      AA AAGM YR +DGHGLS++AF HMARG+GRGW+A++VVT T+ DG ++HAFDVRSW EY+                               H GAT SAAMAPLP+ AP+LVI REN+ SKLF+ ATR+DLDVESE FNR YHVIG DRAFARE+LD
Sbjct:   34 VGLWMIRSILHHRGREHQTATAARAAGMKYREQDGHGLSRIAFDHMARGEGRGWSATNVVTLTAADGVEVHAFDVRSWAEYSVTETDDGGTRVRRRGREPSLGERGTAQLVRRHTGATWSAAMAPLPVNAPRLVIARENLASKLFSAATRLDLDVESEAFNRWYHVIGGDRAFAREMLD 212
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BLAST of mRNA_M-pyrifera_M_contig98519.22687.1 vs. uniprot
Match: A0A3D3Q7N8_9ACTN (Uncharacterized protein (Fragment) n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A3D3Q7N8_9ACTN)

HSP 1 Score: 78.6 bits (192), Expect = 3.750e-14
Identity = 59/199 (29.65%), Postives = 97/199 (48.74%), Query Frame = 1 
Query:   37 QHRGRSVGIERAASAAGMDYRSEDGHGLSKVAFQHMAR-GDGRGWTASHVVTHTSRDGAKIHAFDVRSWTEYAHQGATR-------SAAMAPLPITAPQLVIGRENVVSKLFATATRIDLDVESEMFNRSYHVIGQDRAFARELLDAQMIDLMVSTEGKITFEFLGRWLLLHTEQVAPDSMPGLARLADEMRQVVPALV 609
            Q + R  G+   A+   + Y   D +GL + +  H+ R GDG+G    +V++ T + G  +   D   +TE       R       S  +A +  T P + + +EN+ ++L       D+D ES+ FNR ++V   DR FA +L+DA+MI  +++T G   FE  G  LL++ ++  P  +  L   A      VP LV
Sbjct:   24 QKQKRRAGLATFATQYQLQYSQTDPYGLLRGSAFHLFREGDGQG--IENVLSGTWQ-GVPVREADYWYYTESTDSKGNRTKSYHYFSVCLAEMGATMPYVGVSKENMFTRLADHVGLRDIDFESDQFNREFNVKSPDREFAFKLIDARMIQWLLTTGGTFGFELDGTTLLVYCKRRKPAELVPLMGTAKAFHDHVPKLV 219
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BLAST of mRNA_M-pyrifera_M_contig98519.22687.1 vs. uniprot
Match: A0A7X6AQH9_9ACTN (Uncharacterized protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X6AQH9_9ACTN)

HSP 1 Score: 68.9 bits (167), Expect = 2.500e-12
Identity = 31/43 (72.09%), Postives = 37/43 (86.05%), Query Frame = 1 
Query:  481 EGKITFEFLGRWLLLHTEQVAPDSMPGLARLADEMRQVVPALV 609
            EG+I+FEF G WLLLHT +V P+ MPGLARLADEMR+VVP +V
Sbjct:    1 EGRISFEFFGSWLLLHTARVEPELMPGLARLADEMRRVVPRIV 43
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BLAST of mRNA_M-pyrifera_M_contig98519.22687.1 vs. uniprot
Match: A0A7W7Q3V0_9PSEU (Uncharacterized protein n=1 Tax=Actinophytocola algeriensis TaxID=1768010 RepID=A0A7W7Q3V0_9PSEU)

HSP 1 Score: 59.7 bits (143), Expect = 1.980e-7
Identity = 49/173 (28.32%), Postives = 79/173 (45.66%), Query Frame = 1 
Query:    7 IGIWMIRSLLQHRGRSVGIERAASAAGMDYRSEDGHGLSKVAFQHMARGDGRGWTASHVVTHTSRDGAKIHAFDVRSWTEYAHQGATR-------SAAMAPLPITAPQLVIGRENVVSKLFATATRIDLDVESEMFNRSYHVIGQDRAFARELLDAQMIDLMVSTEGKITFEF 504
            +G+ +      H+ +       AS  G  Y   D  GL+   F     GDG G  A HV+T T RD   + AF+  S+ E    G  R       +     LP   P L + RE +  KL       DL +ESE FN+++H+  ++  FA ++L  +M++ M++ +  ++  F
Sbjct:   14 VGLVLYFQYQAHKKKVAAFTALASERGWRYTERD-RGLAN-RFLGTPFGDGHGRDARHVLTGTFRDRPML-AFEY-SYKETHGSGDDRRTETYHYTVVSLGLPAPKPTLQVNREGLGRKLLGLVGVRDLQLESEDFNKTFHITTENDRFAYDVLHPRMMEWMLADQRALSTPF 182
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BLAST of mRNA_M-pyrifera_M_contig98519.22687.1 vs. uniprot
Match: A0A3A0CFH5_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3A0CFH5_9BACT)

HSP 1 Score: 57.4 bits (137), Expect = 1.950e-6
Identity = 45/146 (30.82%), Postives = 69/146 (47.26%), Query Frame = 1 
Query:   49 RSVGIERAASAAGMDYRSEDGHGLSKV-AFQHMARGDGRGWTASHVVTHTSRDGAKIHAFDVRSWTEYAHQGATR--SAAMAPLPITAPQLVIGRENVVSKLFATATRIDLDVESEMFNRSYHVIGQDRAFARELLDAQMIDLMVS 477
            R   +   A A G +++S  G    K  AF     G GR   +++++ H  R   +   FD R  T       +      +A +P+  P+L I  E++  KL A     D+D ES  F+R YHV G DR  A +L+  QMI+ ++S
Sbjct:   74 RRKALAEFAHANGFEFKSAPGDIHEKYEAFSPF--GSGRNRRSANLI-HGQRGEIRWEMFDYRYTTGSGKNKTSHRVGVVVAKVPLMLPRLRIRPEHIFDKLAAAVGFDDIDFESAEFSRKYHVKGDDRKTAYDLIHPQMIEYLLS 216
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig98519.22687.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A7X6AQY3_9ACTN1.070e-6358.10Uncharacterized protein (Fragment) n=1 Tax=Actinom... [more]
A0A3D3Q7N8_9ACTN3.750e-1429.65Uncharacterized protein (Fragment) n=1 Tax=Actinom... [more]
A0A7X6AQH9_9ACTN2.500e-1272.09Uncharacterized protein n=1 Tax=Actinomycetia bact... [more]
A0A7W7Q3V0_9PSEU1.980e-728.32Uncharacterized protein n=1 Tax=Actinophytocola al... [more]
A0A3A0CFH5_9BACT1.950e-630.82Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig98519contigM-pyrifera_M_contig98519:3..695 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size609
Cds size591
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig98519.22687.1prot_M-pyrifera_M_contig98519.22687.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig98519 3..677 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816902.538692-CDS-M-pyrifera_M_contig98519:2..3591622816902.538692-CDS-M-pyrifera_M_contig98519:2..359Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig98519 3..359 -
1692278245.755333-CDS-M-pyrifera_M_contig98519:2..3591692278245.755333-CDS-M-pyrifera_M_contig98519:2..359Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig98519 3..359 -
1622816902.5514996-CDS-M-pyrifera_M_contig98519:443..6771622816902.5514996-CDS-M-pyrifera_M_contig98519:443..677Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig98519 444..677 -
1692278245.7676954-CDS-M-pyrifera_M_contig98519:443..6771692278245.7676954-CDS-M-pyrifera_M_contig98519:443..677Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig98519 444..677 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816902.562926-UTR-M-pyrifera_M_contig98519:677..6951622816902.562926-UTR-M-pyrifera_M_contig98519:677..695Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig98519 678..695 -
1692278245.7791426-UTR-M-pyrifera_M_contig98519:677..6951692278245.7791426-UTR-M-pyrifera_M_contig98519:677..695Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig98519 678..695 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig98519.22687.1

>prot_M-pyrifera_M_contig98519.22687.1 ID=prot_M-pyrifera_M_contig98519.22687.1|Name=mRNA_M-pyrifera_M_contig98519.22687.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=197bp
MIRSLLQHRGRSVGIERAASAAGMDYRSEDGHGLSKVAFQHMARGDGRGW
TASHVVTHTSRDGAKIHAFDVRSWTEYAHQGATRSAAMAPLPITAPQLVI
GRENVVSKLFATATRIDLDVESEMFNRSYHVIGQDRAFARELLDAQMIDL
MVSTEGKITFEFLGRWLLLHTEQVAPDSMPGLARLADEMRQVVPALV
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mRNA from alignment at M-pyrifera_M_contig98519:3..695-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig98519.22687.1 ID=mRNA_M-pyrifera_M_contig98519.22687.1|Name=mRNA_M-pyrifera_M_contig98519.22687.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=693bp|location=Sequence derived from alignment at M-pyrifera_M_contig98519:3..695- (Macrocystis pyrifera P11B4 male)
TCCGCCATCGGCATCTGGATGATTCGCTCGCTGCTGCAGCATCGGGGCCG
CAGCGTGGGCATCGAGCGGGCCGCATCGGCGGCCGGCATGGACTATCGCA
GCGAGGACGGGCACGGCCTGTCGAAGGTGGCCTTCCAACACATGGCCCGC
GGCGACGGGCGGGGGTGGACGGCCAGCCATGTCGTGACCCACACGAGTCG
CGACGGGGCGAAGATCCATGCCTTCGACGTCCGATCGTGGACCGAGTACG
CCGTCAACGAGAATCACAACGGCGAGAAGACCGTGCGACGACGCCGCGCC
GGCGAGGGCCGAGCGAGTGATCGGATCCAACGCAAGCACCAGGGAGCCAC
GCGCTCGGCAGCGATGGCGCCGCTCCCGATCACGGCGCCCCAGCTCGTGA
TCGGCCGGGAGAATGTCGTCTCGAAGCTGTTCGCCACCGCCACCCGCATC
GACCTCGACGTCGAGTCCGAGATGTTCAACCGCTCGTACCACGTCATCGG
GCAGGACCGGGCCTTCGCTCGCGAGCTGCTCGATGCGCAGATGATCGATC
TGATGGTGTCCACCGAGGGCAAGATCACCTTCGAGTTCCTCGGCCGATGG
CTCCTGTTGCACACCGAGCAGGTCGCTCCGGACTCGATGCCGGGTCTGGC
CCGACTGGCCGACGAGATGCGCCAGGTCGTTCCCGCCCTGGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig98519:3..695-

>mRNA_M-pyrifera_M_contig98519.22687.1 ID=mRNA_M-pyrifera_M_contig98519.22687.1|Name=mRNA_M-pyrifera_M_contig98519.22687.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1182bp|location=Sequence derived from alignment at M-pyrifera_M_contig98519:3..695- (Macrocystis pyrifera P11B4 male)
ATGATTCGCTCGCTGCTGCAGCATCGGGGCCGCAGCGTGGGCATCGAGCG
GGCCGCATCGGCGGCCGGCATGGACTATCGCAGCGAGGACGGGCACGGCC
TGTCGAAGGTGGCCTTCCAACACATGGCCCGCGGCGACGGGCGGGGGTGG
ACGGCCAGCCATGTCGTGACCCACACGAGTCGCGACGGGGCGAAGATCCA
TGCCTTCGACGTCCGATCGTGGACCGAGTACGCCATGATTCGCTCGCTGC
TGCAGCATCGGGGCCGCAGCGTGGGCATCGAGCGGGCCGCATCGGCGGCC
GGCATGGACTATCGCAGCGAGGACGGGCACGGCCTGTCGAAGGTGGCCTT
CCAACACATGGCCCGCGGCGACGGGCGGGGGTGGACGGCCAGCCATGTCG
TGACCCACACGAGTCGCGACGGGGCGAAGATCCATGCCTTCGACGTCCGA
TCGTGGACCGAGTACGCCCACCAGGGAGCCACGCGCTCGGCAGCGATGGC
GCCGCTCCCGATCACGGCGCCCCAGCTCGTGATCGGCCGGGAGAATGTCG
TCTCGAAGCTGTTCGCCACCGCCACCCGCATCGACCTCGACGTCGAGTCC
GAGATGTTCAACCGCTCGTACCACGTCATCGGGCAGGACCGGGCCTTCGC
TCGCGAGCTGCTCGATGCGCAGATGATCGATCTGATGGTGTCCACCGAGG
GCAAGATCACCTTCGAGTTCCTCGGCCGATGGCTCCTGTTGCACACCGAG
CAGGTCGCTCCGGACTCGATGCCGGGTCTGGCCCGACTGGCCGACGAGAT
GCGCCAGGTCGTTCCCGCCCTGGTGCACCAGGGAGCCACGCGCTCGGCAG
CGATGGCGCCGCTCCCGATCACGGCGCCCCAGCTCGTGATCGGCCGGGAG
AATGTCGTCTCGAAGCTGTTCGCCACCGCCACCCGCATCGACCTCGACGT
CGAGTCCGAGATGTTCAACCGCTCGTACCACGTCATCGGGCAGGACCGGG
CCTTCGCTCGCGAGCTGCTCGATGCGCAGATGATCGATCTGATGGTGTCC
ACCGAGGGCAAGATCACCTTCGAGTTCCTCGGCCGATGGCTCCTGTTGCA
CACCGAGCAGGTCGCTCCGGACTCGATGCCGGGTCTGGCCCGACTGGCCG
ACGAGATGCGCCAGGTCGTTCCCGCCCTGGTG
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