mRNA_M-pyrifera_M_contig98515.22686.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig98515.22686.1
Unique NamemRNA_M-pyrifera_M_contig98515.22686.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig98515.22686.1 vs. uniprot
Match: A0A3B8X4C4_9BACT (Glycosyl hydrolase family 31 (Fragment) n=1 Tax=Rikenellaceae bacterium TaxID=2049048 RepID=A0A3B8X4C4_9BACT)

HSP 1 Score: 68.9 bits (167), Expect = 3.580e-13
Identity = 41/77 (53.25%), Postives = 55/77 (71.43%), Query Frame = 1
Query:    7 NPVADPKAVVESSDGLARFTVLTDRLLRLEYRRKGGAWENGQTVAVWNRKLPVPAFHSS-EGAKLVIETDGLVLTYE 234
            NP A+P AVVE   G ARFTVLTDRL+R+E+    G +E+  ++A+ NR LPVP+F SS +G +LVI+T  L L Y+
Sbjct:   21 NPKANPSAVVEF--GNARFTVLTDRLVRMEWA-SDGVFEDRASLAIVNRDLPVPSFTSSVKGGELVIKTGKLTLRYK 94          
BLAST of mRNA_M-pyrifera_M_contig98515.22686.1 vs. uniprot
Match: UPI0009DC9A47 (glycoside hydrolase family 31 protein n=2 Tax=unclassified Prevotella TaxID=2638335 RepID=UPI0009DC9A47)

HSP 1 Score: 67.8 bits (164), Expect = 2.040e-11
Identity = 39/79 (49.37%), Postives = 51/79 (64.56%), Query Frame = 1
Query:    7 NPVADPKAVVESSDGLARFTVLTDRLLRLEYRRKGGAWENGQTVAVWNRKLPVPAFHS-SEGAKLVIETDGLVLTYENN 240
            NP A+P+A+V S  G ARFTVLT R++R++Y      +E+  T AV NR LPVP F +  EG  L IET+ L L Y+ N
Sbjct:   25 NPQANPEAIVTS--GKARFTVLTPRMIRIQYS-SSSKFEDRATFAVINRNLPVPVFSTREEGGYLYIETEALTLRYKKN 100          
BLAST of mRNA_M-pyrifera_M_contig98515.22686.1 vs. uniprot
Match: A0A813FXE7_POLGL (Hypothetical protein n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813FXE7_POLGL)

HSP 1 Score: 67.4 bits (163), Expect = 2.800e-11
Identity = 43/80 (53.75%), Postives = 52/80 (65.00%), Query Frame = 1
Query:    7 NPVADPKAVVESSDGLARFTVLTDRLLRLEYRRKGGAWENGQTVAVWNRKLPVPAF--HSSEGA---KLVIETDGLVLTY 231
            +PVADPKAVV   +G ARFTVLTDRL+R E+   GG + +  T AV NR+LPVP F  H+ EG     L+IET    L Y
Sbjct:   45 DPVADPKAVVV--EGKARFTVLTDRLIRCEFVDSGG-FVDEPTYAVVNRRLPVPDFKHHTEEGLFDKNLIIETQSFKLQY 121          
BLAST of mRNA_M-pyrifera_M_contig98515.22686.1 vs. uniprot
Match: A0A350IEK5_9BACT (GP-PDE domain-containing protein (Fragment) n=1 Tax=Rikenellaceae bacterium TaxID=2049048 RepID=A0A350IEK5_9BACT)

HSP 1 Score: 66.6 bits (161), Expect = 5.160e-11
Identity = 38/79 (48.10%), Postives = 53/79 (67.09%), Query Frame = 1
Query:    7 NPVADPKAVVESSDGLARFTVLTDRLLRLEYRRKGGAWENGQTVAVWNRKLPVPAFHSSE-GAKLVIETDGLVLTYENN 240
            +P ADPKA+V S++  ARFTVL DRL+R+E+  + G +E+  T+ + NRK+ VP +     G KL+IET  L LTY  N
Sbjct:  275 DPKADPKAIVVSAN--ARFTVLGDRLIRMEWA-EDGKFEDRATLGIVNRKMEVPQYKVRHAGKKLIIETKALTLTYTGN 350          
BLAST of mRNA_M-pyrifera_M_contig98515.22686.1 vs. uniprot
Match: R5Q498_9BACT (Glycosyl hydrolase family 31 n=3 Tax=Prevotella TaxID=838 RepID=R5Q498_9BACT)

HSP 1 Score: 65.9 bits (159), Expect = 9.710e-11
Identity = 39/77 (50.65%), Postives = 53/77 (68.83%), Query Frame = 1
Query:    7 NPVADPKAVVESSDGLARFTVLTDRLLRLEYRRKGGAWENGQTVAVWNRKLPVPAFHSSE-GAKLVIETDGLVLTYE 234
            NPVADP AVV+S  G  RFTVLT +++R++Y  K   +E+  T AV NR+LPVPAF +SE    L I+T+ + L Y+
Sbjct:   24 NPVADPDAVVQS--GNMRFTVLTPQMIRIQYSSKK-VFEDRATFAVVNRRLPVPAFTTSEEDGYLYIKTEAVTLKYK 97          
BLAST of mRNA_M-pyrifera_M_contig98515.22686.1 vs. uniprot
Match: A0A800CHA3_9CHLR (Uncharacterized protein (Fragment) n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A800CHA3_9CHLR)

HSP 1 Score: 63.5 bits (153), Expect = 1.070e-10
Identity = 37/77 (48.05%), Postives = 49/77 (63.64%), Query Frame = 1
Query:    7 NPVADPKAVVESSDGLARFTVLTDRLLRLEYRRKGGAWENGQTVAVWNRKLPVPAFHSSEG-AKLVIETDGLVLTYE 234
            +P+ADP AV+ +    ARFT+LTDRLLRLEY   G  +E+  +   W R LPVP F   EG  ++ IET  L L+Y+
Sbjct:   12 DPIADPTAVITTPT--ARFTILTDRLLRLEYSPTG-QFEDRPSQTFWTRCLPVPEFDVVEGNGRIQIETADLTLSYK 85          
BLAST of mRNA_M-pyrifera_M_contig98515.22686.1 vs. uniprot
Match: A0A3S2V473_9SPHI (DUF5110 domain-containing protein n=3 Tax=Sphingobacteriaceae TaxID=84566 RepID=A0A3S2V473_9SPHI)

HSP 1 Score: 63.5 bits (153), Expect = 6.330e-10
Identity = 39/77 (50.65%), Postives = 53/77 (68.83%), Query Frame = 1
Query:    7 NPVADPKAVVESSDGLARFTVLTDRLLRLEYRRKGGAWENGQTVAVWNRKLPVPAFHS-SEGAKLVIETDGLVLTYE 234
            +P+A+PKAVV+S  G ARFTVLT RL+R+E+       +N  T+ + NR LPVP F S +E  +LVI+TD L L Y+
Sbjct:   35 HPLANPKAVVQS--GQARFTVLTPRLIRMEWTAALPFIDNA-TLTIINRNLPVPRFTSKTENGELVIKTDELELRYK 108          
BLAST of mRNA_M-pyrifera_M_contig98515.22686.1 vs. uniprot
Match: A0A7X8Z8K0_9BACT (Glycosyl hydrolase family 31 (Fragment) n=1 Tax=Rikenellaceae bacterium TaxID=2049048 RepID=A0A7X8Z8K0_9BACT)

HSP 1 Score: 62.8 bits (151), Expect = 6.410e-10
Identity = 36/77 (46.75%), Postives = 53/77 (68.83%), Query Frame = 1
Query:    7 NPVADPKAVVESSDGLARFTVLTDRLLRLEYRRKGGAWENGQTVAVWNRKLPVPAFHSS-EGAKLVIETDGLVLTYE 234
            NPVA P AVV+  +  ARFT+LTDRL+R+E+  + G +E+  ++A+ NR LPVP F  S +   L I+TD + L+Y+
Sbjct:   21 NPVASPDAVVKFEN--ARFTILTDRLIRMEWA-EDGVFEDRASLAIVNRNLPVPKFTKSVKDGVLTIKTDKVSLSYK 94          
BLAST of mRNA_M-pyrifera_M_contig98515.22686.1 vs. uniprot
Match: F2UPR6_SALR5 (DUF5110 domain-containing protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2UPR6_SALR5)

HSP 1 Score: 63.2 bits (152), Expect = 8.660e-10
Identity = 40/82 (48.78%), Postives = 48/82 (58.54%), Query Frame = 1
Query:    7 NPVADPKAVVESSDGLARFTVLTDRLLRLEYR------RKGGAWENGQTVAVWNRKLPVPAF-HSSEGAKLVIETDGLVLTY 231
            NPVA+  A V + D  ARFTVLTDRL+R+EY       R    +E+  T+A  NR LPVPAF HS     L I T  L +TY
Sbjct:   44 NPVANASATVIAGD--ARFTVLTDRLVRMEYAGNAADPRSATQYEDRPTLAFLNRNLPVPAFTHSISNGVLTIATKALNITY 123          
BLAST of mRNA_M-pyrifera_M_contig98515.22686.1 vs. uniprot
Match: A0A7C3D810_9BACT (Glycosyl hydrolase family 31 (Fragment) n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A7C3D810_9BACT)

HSP 1 Score: 60.1 bits (144), Expect = 1.350e-9
Identity = 38/76 (50.00%), Postives = 50/76 (65.79%), Query Frame = 1
Query:    7 NPVADPKAVVESSDGLARFTVLTDRLLRLEYRRKGGAWENGQTVAVWNRKLPVPAFHSSE-GAKLVIETDGLVLTY 231
            +PVA+PKAVV      ARFTVLT R++R+E+ R G A+E+  T+   NR++PVPA+  SE    L IET  L L Y
Sbjct:   26 DPVANPKAVVVRKQ--ARFTVLTPRVIRMEWSRDG-AFEDHATLVFVNRRVPVPAYTVSEKDGWLRIETSNLHLVY 98          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig98515.22686.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3B8X4C4_9BACT3.580e-1353.25Glycosyl hydrolase family 31 (Fragment) n=1 Tax=Ri... [more]
UPI0009DC9A472.040e-1149.37glycoside hydrolase family 31 protein n=2 Tax=uncl... [more]
A0A813FXE7_POLGL2.800e-1153.75Hypothetical protein n=2 Tax=Polarella glacialis T... [more]
A0A350IEK5_9BACT5.160e-1148.10GP-PDE domain-containing protein (Fragment) n=1 Ta... [more]
R5Q498_9BACT9.710e-1150.65Glycosyl hydrolase family 31 n=3 Tax=Prevotella Ta... [more]
A0A800CHA3_9CHLR1.070e-1048.05Uncharacterized protein (Fragment) n=1 Tax=Anaerol... [more]
A0A3S2V473_9SPHI6.330e-1050.65DUF5110 domain-containing protein n=3 Tax=Sphingob... [more]
A0A7X8Z8K0_9BACT6.410e-1046.75Glycosyl hydrolase family 31 (Fragment) n=1 Tax=Ri... [more]
F2UPR6_SALR58.660e-1048.78DUF5110 domain-containing protein n=1 Tax=Salpingo... [more]
A0A7C3D810_9BACT1.350e-950.00Glycosyl hydrolase family 31 (Fragment) n=1 Tax=Ba... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig98515contigM-pyrifera_M_contig98515:257..496 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score68.2
Seed ortholog evalue2e-09
Seed eggNOG ortholog1410613.JNKF01000012_gene1713
Preferred namexylS
KEGG rclassRC00028,RC00049,RC00077
KEGG koko:K01187
KEGG ReactionR00028,R00801,R00802,R06087,R06088
KEGG Pathwayko00052,ko00500,ko01100,map00052,map00500,map01100
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Belongs to the glycosyl hydrolase 31 family
EggNOG OGs2FM4Z@200643,4NE1H@976,COG1501@1,COG1501@2
EC3.2.1.20
COG Functional cat.G
CAZyGH31
Best tax levelBacteroidia
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size240
Cds size240
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816902.5093088-CDS-M-pyrifera_M_contig98515:256..4961622816902.5093088-CDS-M-pyrifera_M_contig98515:256..496Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig98515 257..496 +
1692278245.7388434-CDS-M-pyrifera_M_contig98515:256..4961692278245.7388434-CDS-M-pyrifera_M_contig98515:256..496Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig98515 257..496 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig98515.22686.1prot_M-pyrifera_M_contig98515.22686.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig98515 257..496 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig98515.22686.1

>prot_M-pyrifera_M_contig98515.22686.1 ID=prot_M-pyrifera_M_contig98515.22686.1|Name=mRNA_M-pyrifera_M_contig98515.22686.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=80bp
MCNPVADPKAVVESSDGLARFTVLTDRLLRLEYRRKGGAWENGQTVAVWN
RKLPVPAFHSSEGAKLVIETDGLVLTYENN
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mRNA from alignment at M-pyrifera_M_contig98515:257..496+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig98515.22686.1 ID=mRNA_M-pyrifera_M_contig98515.22686.1|Name=mRNA_M-pyrifera_M_contig98515.22686.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=240bp|location=Sequence derived from alignment at M-pyrifera_M_contig98515:257..496+ (Macrocystis pyrifera P11B4 male)
ATGTGCAATCCTGTCGCAGATCCAAAGGCTGTTGTCGAGAGTAGCGATGG ATTGGCAAGGTTTACTGTACTTACAGATCGTCTTCTCCGATTGGAGTATA GAAGGAAAGGAGGTGCATGGGAAAATGGACAGACTGTGGCTGTTTGGAAT CGTAAACTGCCTGTACCAGCGTTTCATTCTTCAGAGGGCGCCAAATTGGT GATCGAGACGGATGGACTAGTCTTAACATATGAAAACAAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig98515:257..496+

>mRNA_M-pyrifera_M_contig98515.22686.1 ID=mRNA_M-pyrifera_M_contig98515.22686.1|Name=mRNA_M-pyrifera_M_contig98515.22686.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=480bp|location=Sequence derived from alignment at M-pyrifera_M_contig98515:257..496+ (Macrocystis pyrifera P11B4 male)
ATGTGCAATCCTGTCGCAGATCCAAAGGCTGTTGTCGAGAGTAGCGATGG
ATTGGCAAGGTTTACTGTACTTACAGATCGTCTTCTCCGATTGGAGTATA
GAAGGAAAGGAGGTGCATGGGAAAATGGACAGACTGTGGCTGTTTGGAAT
CGTAAACTGCCTGTACCAGCGTTTCATTCTTCAGAGGGCGCCAAATTGGT
GATCGAGACGGATGGACTAGTCTTAACATATGAAAACAACATGTGCAATC
CTGTCGCAGATCCAAAGGCTGTTGTCGAGAGTAGCGATGGATTGGCAAGG
TTTACTGTACTTACAGATCGTCTTCTCCGATTGGAGTATAGAAGGAAAGG
AGGTGCATGGGAAAATGGACAGACTGTGGCTGTTTGGAATCGTAAACTGC
CTGTACCAGCGTTTCATTCTTCAGAGGGCGCCAAATTGGTGATCGAGACG
GATGGACTAGTCTTAACATATGAAAACAAC
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