mRNA_M-pyrifera_M_contig98513.22684.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig98513.22684.1
Unique NamemRNA_M-pyrifera_M_contig98513.22684.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig98513.22684.1 vs. uniprot
Match: A0A2E7K4V1_9PLAN (Uncharacterized protein n=6 Tax=Gimesia TaxID=1649453 RepID=A0A2E7K4V1_9PLAN)

HSP 1 Score: 73.9 bits (180), Expect = 5.830e-15
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = 1 
Query:    1 MLANANLINVLLLLAVMFVGYLFVLIPILIYYAIQHMRSPQL 126
            MLANANLINVLLLLAVMFVGYLFVLIPILIYYAIQHMRSPQL
Sbjct:    1 MLANANLINVLLLLAVMFVGYLFVLIPILIYYAIQHMRSPQL 42
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BLAST of mRNA_M-pyrifera_M_contig98513.22684.1 vs. uniprot
Match: A0A518A097_9PLAN (Uncharacterized protein n=3 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518A097_9PLAN)

HSP 1 Score: 65.9 bits (159), Expect = 6.940e-12
Identity = 36/40 (90.00%), Postives = 39/40 (97.50%), Query Frame = 1 
Query:    7 ANANLINVLLLLAVMFVGYLFVLIPILIYYAIQHMRSPQL 126
            ANANLINV++LLAVMF+ YLFVLIPILIYYAIQHMRSPQL
Sbjct:    3 ANANLINVVILLAVMFICYLFVLIPILIYYAIQHMRSPQL 42
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BLAST of mRNA_M-pyrifera_M_contig98513.22684.1 vs. uniprot
Match: A0A355G9Y3_9PLAN (Uncharacterized protein n=2 Tax=Planctomycetaceae TaxID=126 RepID=A0A355G9Y3_9PLAN)

HSP 1 Score: 59.3 bits (142), Expect = 2.030e-9
Identity = 33/42 (78.57%), Postives = 37/42 (88.10%), Query Frame = 1 
Query:    1 MLANANLINVLLLLAVMFVGYLFVLIPILIYYAIQHMRSPQL 126
            MLANANLIN L++L VM + YLF+LIP LIYYAIQHMRSPQL
Sbjct:    1 MLANANLINGLIILVVMILCYLFILIPFLIYYAIQHMRSPQL 42
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BLAST of mRNA_M-pyrifera_M_contig98513.22684.1 vs. uniprot
Match: A0A517VEI1_9PLAN (Uncharacterized protein n=1 Tax=Gimesia algae TaxID=2527971 RepID=A0A517VEI1_9PLAN)

HSP 1 Score: 59.3 bits (142), Expect = 2.030e-9
Identity = 35/42 (83.33%), Postives = 37/42 (88.10%), Query Frame = 1 
Query:    1 MLANANLINVLLLLAVMFVGYLFVLIPILIYYAIQHMRSPQL 126
            MLANANLIN L+LLA M + YLFVLIP LIYYAIQHMRSPQL
Sbjct:    1 MLANANLINGLILLAGMILCYLFVLIPFLIYYAIQHMRSPQL 42
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BLAST of mRNA_M-pyrifera_M_contig98513.22684.1 vs. uniprot
Match: A6C9V2_9PLAN (Uncharacterized protein n=5 Tax=Planctomycetaceae TaxID=126 RepID=A6C9V2_9PLAN)

HSP 1 Score: 57.4 bits (137), Expect = 1.060e-8
Identity = 34/42 (80.95%), Postives = 36/42 (85.71%), Query Frame = 1 
Query:    1 MLANANLINVLLLLAVMFVGYLFVLIPILIYYAIQHMRSPQL 126
            MLANANLIN L+LL  M + YLFVLIP LIYYAIQHMRSPQL
Sbjct:    1 MLANANLINGLILLLGMILCYLFVLIPFLIYYAIQHMRSPQL 42
[Close]
BLAST of mRNA_M-pyrifera_M_contig98513.22684.1 vs. uniprot
Match: A0A518I664_9PLAN (Uncharacterized protein n=2 Tax=Gimesia TaxID=1649453 RepID=A0A518I664_9PLAN)

HSP 1 Score: 54.7 bits (130), Expect = 1.070e-7
Identity = 33/42 (78.57%), Postives = 35/42 (83.33%), Query Frame = 1 
Query:    1 MLANANLINVLLLLAVMFVGYLFVLIPILIYYAIQHMRSPQL 126
            MLANAN IN L +L  + V YLFVLIPILIYYAIQHMRSPQL
Sbjct:    1 MLANANFINGLWILLGIIVCYLFVLIPILIYYAIQHMRSPQL 42
[Close]
BLAST of mRNA_M-pyrifera_M_contig98513.22684.1 vs. uniprot
Match: A0A517W3J6_9PLAN (Uncharacterized protein n=2 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517W3J6_9PLAN)

HSP 1 Score: 54.7 bits (130), Expect = 1.080e-7
Identity = 32/42 (76.19%), Postives = 36/42 (85.71%), Query Frame = 1 
Query:    1 MLANANLINVLLLLAVMFVGYLFVLIPILIYYAIQHMRSPQL 126
            MLAN NLIN +L++  M V YLFVLIPILIYYAIQHMRSP+L
Sbjct:    1 MLANVNLINCVLIVVGMGVCYLFVLIPILIYYAIQHMRSPRL 42
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig98513.22684.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A2E7K4V1_9PLAN5.830e-15100.00Uncharacterized protein n=6 Tax=Gimesia TaxID=1649... [more]
A0A518A097_9PLAN6.940e-1290.00Uncharacterized protein n=3 Tax=Gimesia panareensi... [more]
A0A355G9Y3_9PLAN2.030e-978.57Uncharacterized protein n=2 Tax=Planctomycetaceae ... [more]
A0A517VEI1_9PLAN2.030e-983.33Uncharacterized protein n=1 Tax=Gimesia algae TaxI... [more]
A6C9V2_9PLAN1.060e-880.95Uncharacterized protein n=5 Tax=Planctomycetaceae ... [more]
A0A518I664_9PLAN1.070e-778.57Uncharacterized protein n=2 Tax=Gimesia TaxID=1649... [more]
A0A517W3J6_9PLAN1.080e-776.19Uncharacterized protein n=2 Tax=Gimesia aquarii Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig98513contigM-pyrifera_M_contig98513:572..697 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size126
Cds size126
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816902.434-CDS-M-pyrifera_M_contig98513:571..6971622816902.434-CDS-M-pyrifera_M_contig98513:571..697Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig98513 572..697 +
1692278245.6953444-CDS-M-pyrifera_M_contig98513:571..6971692278245.6953444-CDS-M-pyrifera_M_contig98513:571..697Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig98513 572..697 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig98513.22684.1prot_M-pyrifera_M_contig98513.22684.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig98513 572..697 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig98513.22684.1

>prot_M-pyrifera_M_contig98513.22684.1 ID=prot_M-pyrifera_M_contig98513.22684.1|Name=mRNA_M-pyrifera_M_contig98513.22684.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=42bp
MLANANLINVLLLLAVMFVGYLFVLIPILIYYAIQHMRSPQL
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mRNA from alignment at M-pyrifera_M_contig98513:572..697+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig98513.22684.1 ID=mRNA_M-pyrifera_M_contig98513.22684.1|Name=mRNA_M-pyrifera_M_contig98513.22684.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=126bp|location=Sequence derived from alignment at M-pyrifera_M_contig98513:572..697+ (Macrocystis pyrifera P11B4 male)
ATGCTGGCTAATGCCAACCTGATTAATGTGTTACTCCTGCTGGCGGTCAT
GTTCGTCGGCTACCTGTTTGTGTTGATCCCGATACTGATCTATTACGCGA
TTCAGCACATGCGGTCTCCCCAGCTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig98513:572..697+

>mRNA_M-pyrifera_M_contig98513.22684.1 ID=mRNA_M-pyrifera_M_contig98513.22684.1|Name=mRNA_M-pyrifera_M_contig98513.22684.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=252bp|location=Sequence derived from alignment at M-pyrifera_M_contig98513:572..697+ (Macrocystis pyrifera P11B4 male)
ATGCTGGCTAATGCCAACCTGATTAATGTGTTACTCCTGCTGGCGGTCAT
GTTCGTCGGCTACCTGTTTGTGTTGATCCCGATACTGATCTATTACGCGA
TTCAGCACATGCGGTCTCCCCAGCTGATGCTGGCTAATGCCAACCTGATT
AATGTGTTACTCCTGCTGGCGGTCATGTTCGTCGGCTACCTGTTTGTGTT
GATCCCGATACTGATCTATTACGCGATTCAGCACATGCGGTCTCCCCAGC
TG
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