mRNA_M-pyrifera_M_contig98512.22682.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig98512.22682.1
Unique NamemRNA_M-pyrifera_M_contig98512.22682.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig98512.22682.1 vs. uniprot
Match: UPI00141F35FF (hypothetical protein n=1 Tax=Rubinisphaera sp. JC658 TaxID=2713176 RepID=UPI00141F35FF)

HSP 1 Score: 55.8 bits (133), Expect = 1.240e-5
Identity = 44/181 (24.31%), Postives = 84/181 (46.41%), Query Frame = 1 
Query:    1 ITVQGTMPLSSDNEAWTLPRISLPQAHLIESRMLINVHRPLELSDFSMRDCRLIASMMNRNQKDTLELEDWSDTSELSVTLDTPQADVVSDVLTTISGDLSQSTMRTLLLLTTRTGSVYKLPFRVPPNWKVTRVTSIPWRRPNIVAQWSTTSTDDDGSQLDIEFRDALTPEQTVIVEVWAR 543
            I + G MP S+   +  LP I L  + L+ SR ++ +   LE+        R   +    + + T   E  +  + L + L  P+      VL+ +    S   +++ ++++T  G  + +  R+  +W+ T + S+   +   V QW    T      ++IEFR+A+TPE+ V + + AR
Sbjct:  352 IRLSGLMPFSTTQMSH-LPTIELESSALLGSRTILAISNQLEIEQLVSDGYRQTKTANTPSGQTTFTFEQMTPKAALRLHLAKPKPQPSVQVLSWLDTRSSHWRLQSRVMVSTHAGQTFSVVCRLSDDWEPTDIRSLSGAK---VGQWELGKTSGGQKSIEIEFREAVTPERPVELMIHAR 528
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig98512.22682.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI00141F35FF1.240e-524.31hypothetical protein n=1 Tax=Rubinisphaera sp. JC6... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig98512contigM-pyrifera_M_contig98512:33..632 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size600
Cds size582
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816902.351979-CDS-M-pyrifera_M_contig98512:32..6141622816902.351979-CDS-M-pyrifera_M_contig98512:32..614Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig98512 33..614 -
1692278245.6594343-CDS-M-pyrifera_M_contig98512:32..6141692278245.6594343-CDS-M-pyrifera_M_contig98512:32..614Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig98512 33..614 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816902.3650231-UTR-M-pyrifera_M_contig98512:614..6321622816902.3650231-UTR-M-pyrifera_M_contig98512:614..632Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig98512 615..632 -
1692278245.6729486-UTR-M-pyrifera_M_contig98512:614..6321692278245.6729486-UTR-M-pyrifera_M_contig98512:614..632Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig98512 615..632 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig98512.22682.1prot_M-pyrifera_M_contig98512.22682.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig98512 33..614 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig98512.22682.1

>prot_M-pyrifera_M_contig98512.22682.1 ID=prot_M-pyrifera_M_contig98512.22682.1|Name=mRNA_M-pyrifera_M_contig98512.22682.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=194bp
MPLSSDNEAWTLPRISLPQAHLIESRMLINVHRPLELSDFSMRDCRLIAS
MMNRNQKDTLELEDWSDTSELSVTLDTPQADVVSDVLTTISGDLSQSTMR
TLLLLTTRTGSVYKLPFRVPPNWKVTRVTSIPWRRPNIVAQWSTTSTDDD
GSQLDIEFRDALTPEQTVIVEVWARCVSDPTATSMASPVLRPTD
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mRNA from alignment at M-pyrifera_M_contig98512:33..632-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig98512.22682.1 ID=mRNA_M-pyrifera_M_contig98512.22682.1|Name=mRNA_M-pyrifera_M_contig98512.22682.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=600bp|location=Sequence derived from alignment at M-pyrifera_M_contig98512:33..632- (Macrocystis pyrifera P11B4 male)
ATCACCGTGCAAGGGACGATGCCTCTCTCCTCTGATAATGAGGCATGGAC
ACTGCCACGGATTTCTCTGCCGCAAGCCCACCTCATCGAGTCTCGGATGT
TGATCAACGTCCATCGACCGCTTGAGTTATCGGATTTCTCAATGAGGGAT
TGCAGGCTCATCGCCTCGATGATGAACCGTAACCAGAAAGACACGCTGGA
GCTGGAAGACTGGTCCGACACGTCCGAATTGTCGGTTACTCTGGACACTC
CGCAAGCCGATGTCGTATCAGACGTGTTGACGACCATCTCGGGCGATTTG
TCACAATCGACGATGCGGACTCTGCTCTTGCTGACCACTCGCACGGGCTC
GGTGTACAAGTTGCCGTTTCGGGTTCCACCAAATTGGAAAGTCACTCGCG
TCACCTCTATCCCCTGGAGGAGACCGAACATCGTTGCACAGTGGAGTACG
ACCTCTACCGACGATGACGGATCTCAACTCGACATTGAGTTCCGCGATGC
ATTGACTCCTGAACAGACAGTGATCGTTGAGGTCTGGGCACGCTGTGTTT
CTGATCCCACGGCAACATCAATGGCATCCCCCGTCCTCCGGCCGACAGAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig98512:33..632-

>mRNA_M-pyrifera_M_contig98512.22682.1 ID=mRNA_M-pyrifera_M_contig98512.22682.1|Name=mRNA_M-pyrifera_M_contig98512.22682.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1164bp|location=Sequence derived from alignment at M-pyrifera_M_contig98512:33..632- (Macrocystis pyrifera P11B4 male)
ATGCCTCTCTCCTCTGATAATGAGGCATGGACACTGCCACGGATTTCTCT
GCCGCAAGCCCACCTCATCGAGTCTCGGATGTTGATCAACGTCCATCGAC
CGCTTGAGTTATCGGATTTCTCAATGAGGGATTGCAGGCTCATCGCCTCG
ATGATGAACCGTAACCAGAAAGACACGCTGGAGCTGGAAGACTGGTCCGA
CACGTCCGAATTGTCGGTTACTCTGGACACTCCGCAAGCCGATGTCGTAT
CAGACGTGTTGACGACCATCTCGGGCGATTTGTCACAATCGACGATGCGG
ACTCTGCTCTTGCTGACCACTCGCACGGGCTCGGTGTACAAGTTGCCGTT
TCGGGTTCCACCAAATTGGAAAGTCACTCGCGTCACCTCTATCCCCTGGA
GGAGACCGAACATCGTTGCACAGTGGAGTACGACCTCTACCGACGATGAC
GGATCTCAACTCGACATTGAGTTCCGCGATGCATTGACTCCTGAACAGAC
AGTGATCGTTGAGGTCTGGGCACGCTGTGTTTCTGATCCCACGGCAACAT
CAATGGCATCCCCCGTCCTCCGGCCGACAGATATGCCTCTCTCCTCTGAT
AATGAGGCATGGACACTGCCACGGATTTCTCTGCCGCAAGCCCACCTCAT
CGAGTCTCGGATGTTGATCAACGTCCATCGACCGCTTGAGTTATCGGATT
TCTCAATGAGGGATTGCAGGCTCATCGCCTCGATGATGAACCGTAACCAG
AAAGACACGCTGGAGCTGGAAGACTGGTCCGACACGTCCGAATTGTCGGT
TACTCTGGACACTCCGCAAGCCGATGTCGTATCAGACGTGTTGACGACCA
TCTCGGGCGATTTGTCACAATCGACGATGCGGACTCTGCTCTTGCTGACC
ACTCGCACGGGCTCGGTGTACAAGTTGCCGTTTCGGGTTCCACCAAATTG
GAAAGTCACTCGCGTCACCTCTATCCCCTGGAGGAGACCGAACATCGTTG
CACAGTGGAGTACGACCTCTACCGACGATGACGGATCTCAACTCGACATT
GAGTTCCGCGATGCATTGACTCCTGAACAGACAGTGATCGTTGAGGTCTG
GGCACGCTGTGTTTCTGATCCCACGGCAACATCAATGGCATCCCCCGTCC
TCCGGCCGACAGAT
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