mRNA_M-pyrifera_M_contig98499.22680.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig98499.22680.1
Unique NamemRNA_M-pyrifera_M_contig98499.22680.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig98499.22680.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig98499contigM-pyrifera_M_contig98499:234..443 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.5
Seed ortholog evalue4.4e-08
Seed eggNOG ortholog42099.EPrPV00000018227
KEGG koko:K12472
KEGG Pathwayko04144,map04144
Hectar predicted targeting categoryother localisation
EggNOG free text desc.endocytosis
EggNOG OGsKOG0998@1,KOG0998@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Exons1
Model size210
Cds size210
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816902.2877839-CDS-M-pyrifera_M_contig98499:233..4431622816902.2877839-CDS-M-pyrifera_M_contig98499:233..443Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig98499 234..443 +
1692278245.6206756-CDS-M-pyrifera_M_contig98499:233..4431692278245.6206756-CDS-M-pyrifera_M_contig98499:233..443Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig98499 234..443 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig98499.22680.1prot_M-pyrifera_M_contig98499.22680.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig98499 234..443 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig98499.22680.1

>prot_M-pyrifera_M_contig98499.22680.1 ID=prot_M-pyrifera_M_contig98499.22680.1|Name=mRNA_M-pyrifera_M_contig98499.22680.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=70bp
FDVVPAVADIPAGGEIECVASFRPRAENAFYAAELELYAAPKSFRTFRLS
DEESFVPPSLNVLQVLGNTL
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mRNA from alignment at M-pyrifera_M_contig98499:234..443+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig98499.22680.1 ID=mRNA_M-pyrifera_M_contig98499.22680.1|Name=mRNA_M-pyrifera_M_contig98499.22680.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=210bp|location=Sequence derived from alignment at M-pyrifera_M_contig98499:234..443+ (Macrocystis pyrifera P11B4 male)
TTTGATGTCGTACCAGCTGTGGCTGATATTCCTGCTGGTGGAGAGATTGA ATGTGTTGCTTCTTTCCGACCTCGCGCTGAAAACGCCTTCTACGCCGCTG AACTAGAGCTTTATGCTGCTCCGAAATCGTTCCGCACGTTTCGATTGAGT GATGAAGAATCATTTGTTCCTCCTTCTCTCAACGTCCTGCAAGTTCTTGG AAATACACTA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig98499:234..443+

>mRNA_M-pyrifera_M_contig98499.22680.1 ID=mRNA_M-pyrifera_M_contig98499.22680.1|Name=mRNA_M-pyrifera_M_contig98499.22680.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=420bp|location=Sequence derived from alignment at M-pyrifera_M_contig98499:234..443+ (Macrocystis pyrifera P11B4 male)
TTTGATGTCGTACCAGCTGTGGCTGATATTCCTGCTGGTGGAGAGATTGA
ATGTGTTGCTTCTTTCCGACCTCGCGCTGAAAACGCCTTCTACGCCGCTG
AACTAGAGCTTTATGCTGCTCCGAAATCGTTCCGCACGTTTCGATTGAGT
GATGAAGAATCATTTGTTCCTCCTTCTCTCAACGTCCTGCAAGTTCTTGG
AAATACACTATTTGATGTCGTACCAGCTGTGGCTGATATTCCTGCTGGTG
GAGAGATTGAATGTGTTGCTTCTTTCCGACCTCGCGCTGAAAACGCCTTC
TACGCCGCTGAACTAGAGCTTTATGCTGCTCCGAAATCGTTCCGCACGTT
TCGATTGAGTGATGAAGAATCATTTGTTCCTCCTTCTCTCAACGTCCTGC
AAGTTCTTGGAAATACACTA
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