mRNA_M-pyrifera_M_contig98200.22615.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig98200.22615.1
Unique NamemRNA_M-pyrifera_M_contig98200.22615.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig98200.22615.1 vs. uniprot
Match: A0A0D2W1H9_CAPO3 (DNA-dependent protein kinase catalytic subunit n=2 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2W1H9_CAPO3)

HSP 1 Score: 56.2 bits (134), Expect = 1.350e-6
Identity = 36/108 (33.33%), Postives = 53/108 (49.07%), Query Frame = 1 
Query:    1 ELARRCVSGILHAAALGSSAAADRLPRAMELATEGDEGGDGSGDGASAAFSRHWRTVPTWRFLRWRGQMLALLPRAGSACLSSAVLDAARRYPAAMVHPFMISSEQLS 324
             L +  V  +L A ALGS  A D  PR ++L  +        G+     F      VP+W F+RW  Q++A+L +     LS  + +    YP A+V+PF +S EQ S
Sbjct: 4136 HLPKLIVENVLKAMALGSPDARDSFPRLLQLLAQFGSSSPELGN----LFKDLSEKVPSWMFIRWIAQIVAVLDKPEGLSLSRILKNLCLNYPQAIVYPFFLSCEQFS 4239
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BLAST of mRNA_M-pyrifera_M_contig98200.22615.1 vs. uniprot
Match: UPI001EE63446 (LOW QUALITY PROTEIN: DNA-dependent protein kinase catalytic subunit-like n=2 Tax=Haliotis TaxID=6452 RepID=UPI001EE63446)

HSP 1 Score: 55.1 bits (131), Expect = 3.400e-6
Identity = 34/96 (35.42%), Postives = 48/96 (50.00%), Query Frame = 1 
Query:   28 ILHAAALGSSAAADRLPRAMELATEGDEGGDGSGDGASAAFSRHWRTVPTWRFLRWRGQMLALLPRAGSACLSSAVLDAARRYPAAMVHPFMISSE 315
            +L A  LGS  A +R PR M+L     E          A F    + VP+W F+ W  QM+ALL +  +  +   V+  A  YP A+++PF IS E
Sbjct: 3663 MLKAMKLGSVEARERFPRLMQLVEYYPE--------TMATFREKSQEVPSWMFILWLAQMMALLDKKEAPAVQPIVISLATDYPQAVIYPFRISCE 3750
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BLAST of mRNA_M-pyrifera_M_contig98200.22615.1 vs. uniprot
Match: UPI000D73311F (DNA-dependent protein kinase catalytic subunit-like n=1 Tax=Pomacea canaliculata TaxID=400727 RepID=UPI000D73311F)

HSP 1 Score: 51.2 bits (121), Expect = 7.500e-5
Identity = 32/99 (32.32%), Postives = 49/99 (49.49%), Query Frame = 1 
Query:   19 VSGILHAAALGSSAAADRLPRAMELATEGDEGGDGSGDGASAAFSRHWRTVPTWRFLRWRGQMLALLPRAGSACLSSAVLDAARRYPAAMVHPFMISSE 315
            V  +L A   GS+ A +R PR + +     +  D         F +   T+P+W F+ W  QM+ALL +  +  +   +L  A  YP A+V+PF IS E
Sbjct: 3425 VKCLLDAMRAGSAEALERFPRLLHIIEHYPDTTD--------MFLKKSETIPSWMFILWISQMMALLDKHQAHAVRPIILRIATEYPQAIVYPFHISQE 3515
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig98200.22615.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A0D2W1H9_CAPO31.350e-633.33DNA-dependent protein kinase catalytic subunit n=2... [more]
UPI001EE634463.400e-635.42LOW QUALITY PROTEIN: DNA-dependent protein kinase ... [more]
UPI000D73311F7.500e-532.32DNA-dependent protein kinase catalytic subunit-lik... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig98200contigM-pyrifera_M_contig98200:26..406 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size381
Cds size381
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816899.5376322-CDS-M-pyrifera_M_contig98200:25..4061622816899.5376322-CDS-M-pyrifera_M_contig98200:25..406Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig98200 26..406 -
1692278244.1446183-CDS-M-pyrifera_M_contig98200:25..4061692278244.1446183-CDS-M-pyrifera_M_contig98200:25..406Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig98200 26..406 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig98200.22615.1prot_M-pyrifera_M_contig98200.22615.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig98200 26..406 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig98200.22615.1

>prot_M-pyrifera_M_contig98200.22615.1 ID=prot_M-pyrifera_M_contig98200.22615.1|Name=mRNA_M-pyrifera_M_contig98200.22615.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=127bp
ELARRCVSGILHAAALGSSAAADRLPRAMELATEGDEGGDGSGDGASAAF
SRHWRTVPTWRFLRWRGQMLALLPRAGSACLSSAVLDAARRYPAAMVHPF
MISSEQLSSSSGAASAVAARLGAMLRE
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mRNA from alignment at M-pyrifera_M_contig98200:26..406-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig98200.22615.1 ID=mRNA_M-pyrifera_M_contig98200.22615.1|Name=mRNA_M-pyrifera_M_contig98200.22615.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=381bp|location=Sequence derived from alignment at M-pyrifera_M_contig98200:26..406- (Macrocystis pyrifera P11B4 male)
GAGCTGGCGAGGAGGTGCGTGTCTGGGATTCTTCACGCAGCCGCGCTGGG
CAGCAGCGCGGCTGCGGATCGGCTGCCGCGGGCGATGGAGCTGGCGACAG
AGGGTGACGAGGGCGGCGATGGCAGCGGCGACGGCGCGTCTGCCGCGTTT
TCTCGCCACTGGCGCACCGTGCCCACGTGGCGGTTCCTCAGGTGGCGTGG
GCAGATGCTGGCGCTGCTGCCGCGAGCGGGCTCCGCGTGTCTGTCTTCCG
CGGTGCTGGACGCTGCGCGCCGCTACCCAGCCGCGATGGTGCACCCGTTC
ATGATCAGCAGCGAGCAGCTGTCGTCGTCGTCCGGCGCCGCGTCCGCGGT
CGCAGCCCGGCTGGGCGCCATGCTGCGTGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig98200:26..406-

>mRNA_M-pyrifera_M_contig98200.22615.1 ID=mRNA_M-pyrifera_M_contig98200.22615.1|Name=mRNA_M-pyrifera_M_contig98200.22615.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=762bp|location=Sequence derived from alignment at M-pyrifera_M_contig98200:26..406- (Macrocystis pyrifera P11B4 male)
GAGCTGGCGAGGAGGTGCGTGTCTGGGATTCTTCACGCAGCCGCGCTGGG
CAGCAGCGCGGCTGCGGATCGGCTGCCGCGGGCGATGGAGCTGGCGACAG
AGGGTGACGAGGGCGGCGATGGCAGCGGCGACGGCGCGTCTGCCGCGTTT
TCTCGCCACTGGCGCACCGTGCCCACGTGGCGGTTCCTCAGGTGGCGTGG
GCAGATGCTGGCGCTGCTGCCGCGAGCGGGCTCCGCGTGTCTGTCTTCCG
CGGTGCTGGACGCTGCGCGCCGCTACCCAGCCGCGATGGTGCACCCGTTC
ATGATCAGCAGCGAGCAGCTGTCGTCGTCGTCCGGCGCCGCGTCCGCGGT
CGCAGCCCGGCTGGGCGCCATGCTGCGTGAGGAGCTGGCGAGGAGGTGCG
TGTCTGGGATTCTTCACGCAGCCGCGCTGGGCAGCAGCGCGGCTGCGGAT
CGGCTGCCGCGGGCGATGGAGCTGGCGACAGAGGGTGACGAGGGCGGCGA
TGGCAGCGGCGACGGCGCGTCTGCCGCGTTTTCTCGCCACTGGCGCACCG
TGCCCACGTGGCGGTTCCTCAGGTGGCGTGGGCAGATGCTGGCGCTGCTG
CCGCGAGCGGGCTCCGCGTGTCTGTCTTCCGCGGTGCTGGACGCTGCGCG
CCGCTACCCAGCCGCGATGGTGCACCCGTTCATGATCAGCAGCGAGCAGC
TGTCGTCGTCGTCCGGCGCCGCGTCCGCGGTCGCAGCCCGGCTGGGCGCC
ATGCTGCGTGAG
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