mRNA_M-pyrifera_M_contig9813.22602.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig9813.22602.1
Unique NamemRNA_M-pyrifera_M_contig9813.22602.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig9813.22602.1 vs. uniprot
Match: A0A6H5K4L0_9PHAE (ABC protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K4L0_9PHAE)

HSP 1 Score: 154 bits (389), Expect = 1.980e-41
Identity = 74/81 (91.36%), Postives = 79/81 (97.53%), Query Frame = 1 
Query:    1 MREEFRNCTVLCIAHRLHTIIYYDRVMVLERGKLMEYASPLELLNDPNSLFYALCKKTGALEQLKETARGEQNEKIAREGG 243
            MREEFRNCTVLCIAHRLHTIIYYDRVMVLERG+LMEYASPLELL+DPNSLFYALCKKTGALEQLKETAR EQ E++AR+GG
Sbjct: 1508 MREEFRNCTVLCIAHRLHTIIYYDRVMVLERGELMEYASPLELLDDPNSLFYALCKKTGALEQLKETARVEQEERLARDGG 1588
[Close]
BLAST of mRNA_M-pyrifera_M_contig9813.22602.1 vs. uniprot
Match: A0A7S2UY22_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UY22_9STRA)

HSP 1 Score: 100 bits (248), Expect = 2.610e-25
Identity = 44/68 (64.71%), Postives = 58/68 (85.29%), Query Frame = 1 
Query:    1 MREEFRNCTVLCIAHRLHTIIYYDRVMVLERGKLMEYASPLELLNDPNSLFYALCKKTGALEQLKETA 204
            M+ EF++CTVLCIAHRL+TIIYYDRVMVLE+G +MEY  P +LL D +S+F++LC+K+G LE+LK  A
Sbjct:   31 MQHEFKSCTVLCIAHRLNTIIYYDRVMVLEKGHIMEYDCPADLLQDDSSMFFSLCEKSGNLEELKAAA 98
[Close]
BLAST of mRNA_M-pyrifera_M_contig9813.22602.1 vs. uniprot
Match: A0A836CNA1_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNA1_9STRA)

HSP 1 Score: 105 bits (263), Expect = 1.900e-24
Identity = 47/77 (61.04%), Postives = 62/77 (80.52%), Query Frame = 1 
Query:    1 MREEFRNCTVLCIAHRLHTIIYYDRVMVLERGKLMEYASPLELLNDPNSLFYALCKKTGALEQLKETARGEQNEKIA 231
            MR E R+CT+LCIAHRLHTII+YDR++VLERG++ EYA PL LL DP+SLF ALC+K+GAL +L   A  E+  +++
Sbjct:  635 MRSELRDCTILCIAHRLHTIIFYDRILVLERGRVAEYAPPLALLRDPHSLFRALCEKSGALAELLAVAEDEELTRVS 711
[Close]
BLAST of mRNA_M-pyrifera_M_contig9813.22602.1 vs. uniprot
Match: A0A7S3Y0L7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y0L7_HETAK)

HSP 1 Score: 96.7 bits (239), Expect = 2.830e-21
Identity = 45/80 (56.25%), Postives = 57/80 (71.25%), Query Frame = 1 
Query:    1 MREEFRNCTVLCIAHRLHTIIYYDRVMVLERGKLMEYASPLELLNDPNSLFYALCKKTGALEQLKETARGEQNEKIAREG 240
            +R EF   TVLCIAHRLHT+IYYDRVMVLERG+L EY SP  LL    SLF+ LC+++G L+QL+ TA   +   ++  G
Sbjct:  438 LRTEFAGATVLCIAHRLHTVIYYDRVMVLERGQLAEYDSPAVLLRQKGSLFFKLCERSGDLDQLRATAEDAEASALSERG 517
[Close]
BLAST of mRNA_M-pyrifera_M_contig9813.22602.1 vs. uniprot
Match: A0A8H7BIG2_9FUNG (Uncharacterized protein n=1 Tax=Apophysomyces ossiformis TaxID=679940 RepID=A0A8H7BIG2_9FUNG)

HSP 1 Score: 87.8 bits (216), Expect = 1.390e-20
Identity = 36/61 (59.02%), Postives = 50/61 (81.97%), Query Frame = 1 
Query:   10 EFRNCTVLCIAHRLHTIIYYDRVMVLERGKLMEYASPLELLNDPNSLFYALCKKTGALEQL 192
            EF +CT+LCIAHRLHT+I YDR++VL++G++ E+ASP +LL D  +LFY LC+K+G   QL
Sbjct:   23 EFADCTILCIAHRLHTVIEYDRILVLDQGEIKEFASPWQLLQDSETLFYKLCEKSGEFSQL 83
[Close]
BLAST of mRNA_M-pyrifera_M_contig9813.22602.1 vs. uniprot
Match: A0A1X2H1M9_SYNRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Syncephalastrum racemosum TaxID=13706 RepID=A0A1X2H1M9_SYNRA)

HSP 1 Score: 92.0 bits (227), Expect = 1.440e-19
Identity = 37/67 (55.22%), Postives = 53/67 (79.10%), Query Frame = 1 
Query:    7 EEFRNCTVLCIAHRLHTIIYYDRVMVLERGKLMEYASPLELLNDPNSLFYALCKKTGALEQLKETAR 207
             EF +CT+LCIAHRLHT+I YDR++VL++G ++E+ASPLEL+ D NS FY +C+K+G  + L   A+
Sbjct: 1493 SEFADCTILCIAHRLHTVIEYDRILVLDQGNILEFASPLELIQDTNSAFYKMCRKSGEFDSLLALAK 1559
[Close]
BLAST of mRNA_M-pyrifera_M_contig9813.22602.1 vs. uniprot
Match: A0A8H7ER05_9FUNG (Uncharacterized protein n=1 Tax=Apophysomyces ossiformis TaxID=679940 RepID=A0A8H7ER05_9FUNG)

HSP 1 Score: 91.3 bits (225), Expect = 2.670e-19
Identity = 37/61 (60.66%), Postives = 51/61 (83.61%), Query Frame = 1 
Query:   10 EFRNCTVLCIAHRLHTIIYYDRVMVLERGKLMEYASPLELLNDPNSLFYALCKKTGALEQL 192
            EF +CT+LCIAHRLHT+I YDR++VL++GK+ E+ASPL+L+ND NS+FY +C  +G  E L
Sbjct: 1509 EFADCTILCIAHRLHTVIEYDRILVLDQGKVKEFASPLDLINDVNSVFYKMCHNSGEFESL 1569
[Close]
BLAST of mRNA_M-pyrifera_M_contig9813.22602.1 vs. uniprot
Match: A0A8H7BWH0_9FUNG (Uncharacterized protein n=1 Tax=Apophysomyces ossiformis TaxID=679940 RepID=A0A8H7BWH0_9FUNG)

HSP 1 Score: 90.5 bits (223), Expect = 4.960e-19
Identity = 36/66 (54.55%), Postives = 54/66 (81.82%), Query Frame = 1 
Query:   10 EFRNCTVLCIAHRLHTIIYYDRVMVLERGKLMEYASPLELLNDPNSLFYALCKKTGALEQLKETAR 207
            EF +CT+LCIAHRLHT+I YDR++VL++G++ E+A+PL+LLND  S+FY +C+++G  E L   A+
Sbjct: 1301 EFADCTILCIAHRLHTVIEYDRILVLDQGQVQEFANPLDLLNDEESMFYRMCRESGEFESLVSLAK 1366
[Close]
BLAST of mRNA_M-pyrifera_M_contig9813.22602.1 vs. uniprot
Match: A0A1X2IJ33_9FUNG (p-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Absidia repens TaxID=90262 RepID=A0A1X2IJ33_9FUNG)

HSP 1 Score: 90.5 bits (223), Expect = 4.990e-19
Identity = 38/69 (55.07%), Postives = 52/69 (75.36%), Query Frame = 1 
Query:   10 EFRNCTVLCIAHRLHTIIYYDRVMVLERGKLMEYASPLELLNDPNSLFYALCKKTGALEQLKETARGEQ 216
            EF +CT+LCIAHRL T++ YDR++VL  GK++E+ SPL L+ND  S FY +CKK+G  E L   A+G+Q
Sbjct: 1532 EFSDCTILCIAHRLLTVVEYDRILVLHHGKILEFDSPLNLINDSESAFYKMCKKSGEFESLLTAAKGKQ 1600
[Close]
BLAST of mRNA_M-pyrifera_M_contig9813.22602.1 vs. uniprot
Match: A0A8H7EV27_9FUNG (Uncharacterized protein n=1 Tax=Apophysomyces ossiformis TaxID=679940 RepID=A0A8H7EV27_9FUNG)

HSP 1 Score: 90.1 bits (222), Expect = 6.710e-19
Identity = 39/67 (58.21%), Postives = 53/67 (79.10%), Query Frame = 1 
Query:    7 EEFRNCTVLCIAHRLHTIIYYDRVMVLERGKLMEYASPLELLNDPNSLFYALCKKTGALEQLKETAR 207
             EF  CTVLCIAHRLHTII YDR+MVL++G++ E++SPL+L+ND NSLF+ +C+ +G  E L   A+
Sbjct: 1009 SEFAACTVLCIAHRLHTIIGYDRIMVLDQGEIKEFSSPLDLINDSNSLFHNMCRSSGDFENLVTLAK 1075
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig9813.22602.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K4L0_9PHAE1.980e-4191.36ABC protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0... [more]
A0A7S2UY22_9STRA2.610e-2564.71Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A836CNA1_9STRA1.900e-2461.04P-loop containing nucleoside triphosphate hydrolas... [more]
A0A7S3Y0L7_HETAK2.830e-2156.25Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A8H7BIG2_9FUNG1.390e-2059.02Uncharacterized protein n=1 Tax=Apophysomyces ossi... [more]
A0A1X2H1M9_SYNRA1.440e-1955.22P-loop containing nucleoside triphosphate hydrolas... [more]
A0A8H7ER05_9FUNG2.670e-1960.66Uncharacterized protein n=1 Tax=Apophysomyces ossi... [more]
A0A8H7BWH0_9FUNG4.960e-1954.55Uncharacterized protein n=1 Tax=Apophysomyces ossi... [more]
A0A1X2IJ33_9FUNG4.990e-1955.07p-loop containing nucleoside triphosphate hydrolas... [more]
A0A8H7EV27_9FUNG6.710e-1958.21Uncharacterized protein n=1 Tax=Apophysomyces ossi... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig9813contigM-pyrifera_M_contig9813:6200..7508 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score155.6
Seed ortholog evalue1.2e-35
Seed eggNOG ortholog2880.D7G1Q3
KEGG koko:K05665
KEGG TC3.A.1.208.8
KEGG Pathwayko01523,ko02010,ko04071,ko04977,ko05206,map01523,map02010,map04071,map04977,map05206
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ATPase activity, coupled to transmembrane movement of substances
EggNOG OGsCOG1132@1,KOG0054@2759
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Exons2
Model size304
Cds size303
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816898.950849-CDS-M-pyrifera_M_contig9813:6199..64281622816898.950849-CDS-M-pyrifera_M_contig9813:6199..6428Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9813 6200..6428 -
1692278243.8207583-CDS-M-pyrifera_M_contig9813:6199..64281692278243.8207583-CDS-M-pyrifera_M_contig9813:6199..6428Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9813 6200..6428 -
1622816898.9644072-CDS-M-pyrifera_M_contig9813:7434..75081622816898.9644072-CDS-M-pyrifera_M_contig9813:7434..7508Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9813 7435..7508 -
1692278243.8332126-CDS-M-pyrifera_M_contig9813:7434..75081692278243.8332126-CDS-M-pyrifera_M_contig9813:7434..7508Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9813 7435..7508 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig9813.22602.1prot_M-pyrifera_M_contig9813.22602.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig9813 6200..7508 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig9813.22602.1

>prot_M-pyrifera_M_contig9813.22602.1 ID=prot_M-pyrifera_M_contig9813.22602.1|Name=mRNA_M-pyrifera_M_contig9813.22602.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=101bp
MREEFRNCTVLCIAHRLHTIIYYDRVMVLERGKLMEYASPLELLNDPNSL
FYALCKKTGALEQLKETARGEQNEKIAREGGGGGNDQVGLSLSGGEEDAA
G
back to top

mRNA from alignment at M-pyrifera_M_contig9813:6200..7508-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig9813.22602.1 ID=mRNA_M-pyrifera_M_contig9813.22602.1|Name=mRNA_M-pyrifera_M_contig9813.22602.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1309bp|location=Sequence derived from alignment at M-pyrifera_M_contig9813:6200..7508- (Macrocystis pyrifera P11B4 male)
ATGCGAGAGGAGTTCCGAAACTGCACCGTGCTCTGTATCGCCCACAGGCT
GCACACGATCATCTACTATGACAGGTTGGTCTCGTTTCGTGCCGCCCGTT
TTTTCGTGTCGTTTGTCGATAGAAGGTTTTTGGCGCAATGTCATCTGTTG
ACGGCTTGTTTGGACGATGTTGCGGTGATGGTTGTTGTCGGAGACTGCAG
GGCGAAGGGGGGAGGCATCACACGAAAACCCGACGTGCTCCGTCCCGGCA
TGGTAGTAGGGATGCGAGGGTCTTATGTCATATACGACTACGGCCATGCT
TGGCATGAGCACACCCCGTGCGTATGGCGTGGCTGACTTTCCTTTGTGTA
CGTAGCTCCTTGGCATGAAGTACGTCGACACGGGGGAGCAAGCATTCGAA
CCGAAAACGCCTTCCACGTCGTTTCTTTCGCGCCGTGATCAATTATTTTT
ATACTGCTGTGGCGTCTCTCTAAGTGGGCGACAGCCTTATTACAATTTTA
GCTTGTCGGCCCTTGACATCATATGGCATCGCACTGCTGTCTACGTCTCG
CCGAAGATCGGAAAATTATTCCAACATGTGCAATCAACTTTTTACTCCTC
CCGCGTTTTTCCTCTTGACAAAATTATTTGTGCATGGAAGTTCATGGCTT
GTGGAAAATTTGGTGTTGTCACCACAGGGTACTATTATATGCTAGAGTCG
TCGCGTTTTCACCCATCAAGTTGGCCGCGGATGCTGACATGTATTTTTTT
TTTTTGTCAAGGTCACGAAGTTATCTATTTATTTATTTTTCTTCCACGAA
AAAAATAAATTTAGGGTTGTTCACGCATTTTGTTTTGTTTTCAAGTTGAC
CTCGGATGCTGACGTCGTCCTTTTTATGTCTTGGGTCACTCGAAGTTTAA
TTTTTTCTGTGTAGGTTAGTTTATTATCCACCGAAAAAAAAGAGTTTTTT
TTCTTGAAATGAGAAATCCGCCGCCTTCCTCCGCGCACACCTATCGTCGC
CGTTCGTTTCGTGCTGTATTCTTGCTAAACTTGTTGTGCGCGTCTGGTGT
TGCGGTAACGATATCGTTTCTCGGCGACAGGGTAATGGTGCTTGAGCGGG
GGAAGCTGATGGAGTACGCCTCTCCGCTTGAGCTCCTGAACGACCCCAAC
AGCCTCTTCTACGCCCTGTGCAAGAAAACGGGTGCGCTCGAGCAGCTCAA
GGAGACCGCCAGGGGTGAGCAAAACGAAAAAATCGCGAGAGAAGGGGGTG
GAGGAGGAAACGACCAAGTAGGACTATCGCTCTCGGGAGGCGAGGAAGAC
GCGGCTGGA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig9813:6200..7508-

>mRNA_M-pyrifera_M_contig9813.22602.1 ID=mRNA_M-pyrifera_M_contig9813.22602.1|Name=mRNA_M-pyrifera_M_contig9813.22602.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=606bp|location=Sequence derived from alignment at M-pyrifera_M_contig9813:6200..7508- (Macrocystis pyrifera P11B4 male)
ATGCGAGAGGAGTTCCGAAACTGCACCGTGCTCTGTATCGCCCACAGGCT
GCACACGATCATCTACTATGACAGATGCGAGAGGAGTTCCGAAACTGCAC
CGTGCTCTGTATCGCCCACAGGCTGCACACGATCATCTACTATGACAGGG
TAATGGTGCTTGAGCGGGGGAAGCTGATGGAGTACGCCTCTCCGCTTGAG
CTCCTGAACGACCCCAACAGCCTCTTCTACGCCCTGTGCAAGAAAACGGG
TGCGCTCGAGCAGCTCAAGGAGACCGCCAGGGGTGAGCAAAACGAAAAAA
TCGCGAGAGAAGGGGGTGGAGGAGGAAACGACCAAGTAGGACTATCGCTC
TCGGGAGGCGAGGAAGACGCGGCTGGAGGTAATGGTGCTTGAGCGGGGGA
AGCTGATGGAGTACGCCTCTCCGCTTGAGCTCCTGAACGACCCCAACAGC
CTCTTCTACGCCCTGTGCAAGAAAACGGGTGCGCTCGAGCAGCTCAAGGA
GACCGCCAGGGGTGAGCAAAACGAAAAAATCGCGAGAGAAGGGGGTGGAG
GAGGAAACGACCAAGTAGGACTATCGCTCTCGGGAGGCGAGGAAGACGCG
GCTGGA
back to top