mRNA_M-pyrifera_M_contig98108.22595.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig98108.22595.1
Unique NamemRNA_M-pyrifera_M_contig98108.22595.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig98108.22595.1 vs. uniprot
Match: A0A5A8EKK4_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8EKK4_CAFRO)

HSP 1 Score: 56.2 bits (134), Expect = 1.870e-6
Identity = 42/146 (28.77%), Postives = 67/146 (45.89%), Query Frame = 1 
Query:    1 PTITSITPTTLLPGESSLEVTLCGSNFPPRQVDLDVVEFGGIECEDA-VVESGCVRCPGLITPGATKSSFSAWPSIGERIVVGGREALSFYGTYV-----PLPDITSISPQ--SSKPGSVITINGGGFGVEDGDVSKAWVGGQECE 414
            PT+++ +P+ LLPG   L +TL G N   R  D+  +  G  +C    V+    VRC GL+           W      +V   R   +FY         PL  ++  +P   S+  G+++T++G GFG    D+ +  +GGQ  E
Sbjct: 2529 PTLSTSSPSYLLPGPRHLNMTLNGDNLASRPADILALFIGPSQCPLVEVLPPSTVRCIGLV-----------WDRAAATVVELRRADSTFYLQVPGLESQPLMSLSRAAPSVISTTGGTLVTLSGSGFGQSTLDIDQVKIGGQPAE 2663
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BLAST of mRNA_M-pyrifera_M_contig98108.22595.1 vs. uniprot
Match: A0A534A7V9_9GAMM (Phospholipase (Fragment) n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A534A7V9_9GAMM)

HSP 1 Score: 52.4 bits (124), Expect = 3.760e-5
Identity = 41/136 (30.15%), Postives = 59/136 (43.38%), Query Frame = 1 
Query:    1 PTITSITPTTLLPGESSLEVTLCGSNFPPRQVDLDVVEFGGIECEDAVVESGCVRCPGLITPGATKSSFSAWPSIGERIVVGGREALSFYGTYV---PLPDITSISPQSSKPGSVITINGGGFGVEDGDVSKAWVG 399
            PTITS TPT    G     VT+ G+NF    +  +VV F G     +   S  +     +   AT    +   S  +  +  G ++++  G Y    P P ITS SP S  P +V+TI G  FG +        +G
Sbjct:  532 PTITSFTPTVDPVGTV---VTITGTNFDGNTLSNNVVSFNGAAVTPSAATSTTLTA--TVPSNATTGPITVTVSSSQLYI--GSQSVTSTGAYTVGYPQPTITSFSPTSGGPATVVTITGTNFGTDPQGAGSVTMG 660
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig98108.22595.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A5A8EKK4_CAFRO1.870e-628.77Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
A0A534A7V9_9GAMM3.760e-530.15Phospholipase (Fragment) n=1 Tax=Gammaproteobacter... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig98108contigM-pyrifera_M_contig98108:271..684 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size414
Cds size414
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816898.634269-CDS-M-pyrifera_M_contig98108:270..6841622816898.634269-CDS-M-pyrifera_M_contig98108:270..684Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig98108 271..684 -
1692278243.6541765-CDS-M-pyrifera_M_contig98108:270..6841692278243.6541765-CDS-M-pyrifera_M_contig98108:270..684Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig98108 271..684 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig98108.22595.1prot_M-pyrifera_M_contig98108.22595.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig98108 271..684 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig98108.22595.1

>prot_M-pyrifera_M_contig98108.22595.1 ID=prot_M-pyrifera_M_contig98108.22595.1|Name=mRNA_M-pyrifera_M_contig98108.22595.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=138bp
PTITSITPTTLLPGESSLEVTLCGSNFPPRQVDLDVVEFGGIECEDAVVE
SGCVRCPGLITPGATKSSFSAWPSIGERIVVGGREALSFYGTYVPLPDIT
SISPQSSKPGSVITINGGGFGVEDGDVSKAWVGGQECE
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mRNA from alignment at M-pyrifera_M_contig98108:271..684-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig98108.22595.1 ID=mRNA_M-pyrifera_M_contig98108.22595.1|Name=mRNA_M-pyrifera_M_contig98108.22595.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=414bp|location=Sequence derived from alignment at M-pyrifera_M_contig98108:271..684- (Macrocystis pyrifera P11B4 male)
CCAACCATCACGTCCATCACCCCCACGACTCTGCTCCCAGGTGAGTCGTC
TCTGGAAGTGACTTTATGCGGCTCCAACTTTCCACCACGTCAGGTCGACC
TTGACGTGGTCGAGTTTGGTGGGATCGAGTGTGAGGATGCGGTGGTGGAG
AGTGGTTGTGTGAGGTGCCCGGGGCTCATCACCCCAGGTGCCACAAAATC
TTCCTTCTCCGCGTGGCCAAGCATCGGAGAGCGCATTGTCGTCGGAGGTC
GGGAGGCACTGTCTTTCTACGGAACCTACGTCCCTCTCCCCGATATCACT
TCCATATCCCCTCAATCATCCAAACCAGGCTCAGTGATCACAATCAACGG
CGGAGGATTTGGGGTAGAGGATGGGGATGTGAGCAAGGCTTGGGTTGGTG
GACAGGAGTGTGAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig98108:271..684-

>mRNA_M-pyrifera_M_contig98108.22595.1 ID=mRNA_M-pyrifera_M_contig98108.22595.1|Name=mRNA_M-pyrifera_M_contig98108.22595.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=828bp|location=Sequence derived from alignment at M-pyrifera_M_contig98108:271..684- (Macrocystis pyrifera P11B4 male)
CCAACCATCACGTCCATCACCCCCACGACTCTGCTCCCAGGTGAGTCGTC
TCTGGAAGTGACTTTATGCGGCTCCAACTTTCCACCACGTCAGGTCGACC
TTGACGTGGTCGAGTTTGGTGGGATCGAGTGTGAGGATGCGGTGGTGGAG
AGTGGTTGTGTGAGGTGCCCGGGGCTCATCACCCCAGGTGCCACAAAATC
TTCCTTCTCCGCGTGGCCAAGCATCGGAGAGCGCATTGTCGTCGGAGGTC
GGGAGGCACTGTCTTTCTACGGAACCTACGTCCCTCTCCCCGATATCACT
TCCATATCCCCTCAATCATCCAAACCAGGCTCAGTGATCACAATCAACGG
CGGAGGATTTGGGGTAGAGGATGGGGATGTGAGCAAGGCTTGGGTTGGTG
GACAGGAGTGTGAACCAACCATCACGTCCATCACCCCCACGACTCTGCTC
CCAGGTGAGTCGTCTCTGGAAGTGACTTTATGCGGCTCCAACTTTCCACC
ACGTCAGGTCGACCTTGACGTGGTCGAGTTTGGTGGGATCGAGTGTGAGG
ATGCGGTGGTGGAGAGTGGTTGTGTGAGGTGCCCGGGGCTCATCACCCCA
GGTGCCACAAAATCTTCCTTCTCCGCGTGGCCAAGCATCGGAGAGCGCAT
TGTCGTCGGAGGTCGGGAGGCACTGTCTTTCTACGGAACCTACGTCCCTC
TCCCCGATATCACTTCCATATCCCCTCAATCATCCAAACCAGGCTCAGTG
ATCACAATCAACGGCGGAGGATTTGGGGTAGAGGATGGGGATGTGAGCAA
GGCTTGGGTTGGTGGACAGGAGTGTGAA
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