mRNA_M-pyrifera_M_contig98095.22588.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig98095.22588.1
Unique NamemRNA_M-pyrifera_M_contig98095.22588.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig98095.22588.1 vs. uniprot
Match: UPI001E1DC257 (DDB1- and CUL4-associated factor 13-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DC257)

HSP 1 Score: 147 bits (371), Expect = 4.900e-40
Identity = 72/120 (60.00%), Postives = 90/120 (75.00%), Query Frame = 1 
Query:    1 PFLSFLFPVGSEDNNAYTFDVRKLSEAAVVHGGHVKAVMDVAFSPTGTELVTGSYDCTLRIFGAQMRRSRDVYHLRRMQRVFAVRWSADDKYIFSGSDEANIRVWKARAAERIAPLSAKE 360
            P  +F+F V +ED N Y+FD+RKLS    +H  HV AVMD+ +SPTGTE V+GS+D T+RIF    +RSR+VYH +RMQRV  VRWS D+KYI SGS E NIRVWKARA+E+I  L A+E
Sbjct:  247 PMEAFIFTVANEDYNLYSFDIRKLSMPLTIHKDHVSAVMDLDYSPTGTEFVSGSFDKTIRIFTCGQQRSREVYHTKRMQRVSVVRWSLDNKYILSGSMEMNIRVWKARASEKIGVLKARE 366
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BLAST of mRNA_M-pyrifera_M_contig98095.22588.1 vs. uniprot
Match: K1QGW5_CRAGI (DDB1- and CUL4-associated factor 13 n=2 Tax=Crassostrea TaxID=6564 RepID=K1QGW5_CRAGI)

HSP 1 Score: 145 bits (365), Expect = 3.700e-39
Identity = 72/120 (60.00%), Postives = 87/120 (72.50%), Query Frame = 1 
Query:    1 PFLSFLFPVGSEDNNAYTFDVRKLSEAAVVHGGHVKAVMDVAFSPTGTELVTGSYDCTLRIFGAQMRRSRDVYHLRRMQRVFAVRWSADDKYIFSGSDEANIRVWKARAAERIAPLSAKE 360
            P  SF+F   SED N YTFD+RKLS   ++H  HV AVMDV +SPTG ELV+  YD  LRIF     RSR++YH +RMQRV  V+WS D+KYI SGSDE NIRVWKARA+E++  LS +E
Sbjct:  247 PMESFVFTAASEDYNLYTFDMRKLSAPIMMHMDHVAAVMDVDYSPTGKELVSAGYDKCLRIFSVDTSRSREIYHTKRMQRVRVVQWSLDNKYIISGSDEMNIRVWKARASEKLGMLSTRE 366
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BLAST of mRNA_M-pyrifera_M_contig98095.22588.1 vs. uniprot
Match: A0A8I6TL15_CIMLE (DDB1- and CUL4-associated factor 13 n=1 Tax=Cimex lectularius TaxID=79782 RepID=A0A8I6TL15_CIMLE)

HSP 1 Score: 144 bits (364), Expect = 5.180e-39
Identity = 67/120 (55.83%), Postives = 88/120 (73.33%), Query Frame = 1 
Query:    1 PFLSFLFPVGSEDNNAYTFDVRKLSEAAVVHGGHVKAVMDVAFSPTGTELVTGSYDCTLRIFGAQMRRSRDVYHLRRMQRVFAVRWSADDKYIFSGSDEANIRVWKARAAERIAPLSAKE 360
            P  ++ + V +ED N YTFD+R+LS A  +H GH+ AV+ V +SPTG E+V+GSYD T+RIFG     SRDVYH +RMQR+  V WSADDKYI S SDE N+R+WKARA+E++  L  +E
Sbjct:  248 PMEAYTYTVANEDYNLYTFDMRRLSSAVTIHKGHISAVIAVDYSPTGLEIVSGSYDRTIRIFGNDKSNSRDVYHTKRMQRITNVLWSADDKYILSSSDEMNVRIWKARASEKLGVLKPRE 367
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BLAST of mRNA_M-pyrifera_M_contig98095.22588.1 vs. uniprot
Match: UPI0005D0B116 (DDB1- and CUL4-associated factor 13 n=1 Tax=Plutella xylostella TaxID=51655 RepID=UPI0005D0B116)

HSP 1 Score: 144 bits (364), Expect = 5.440e-39
Identity = 70/120 (58.33%), Postives = 88/120 (73.33%), Query Frame = 1 
Query:    1 PFLSFLFPVGSEDNNAYTFDVRKLSEAAVVHGGHVKAVMDVAFSPTGTELVTGSYDCTLRIFGAQMRRSRDVYHLRRMQRVFAVRWSADDKYIFSGSDEANIRVWKARAAERIAPLSAKE 360
            P  +F+F V +ED N YTFDVRKL +   +H GH  AV+DV ++PTG ELV GSYD T+RIF +    SRDVYH +RMQR+  V+WS D+KYI SGSDE NIR+WKARAAE++  L  +E
Sbjct:  250 PMEAFIFTVANEDYNLYTFDVRKLGQPVNIHMGHTSAVVDVDYAPTGRELVAGSYDKTVRIFESLKGHSRDVYHTKRMQRLTCVKWSLDNKYILSGSDEMNIRMWKARAAEKLGVLKPRE 369
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BLAST of mRNA_M-pyrifera_M_contig98095.22588.1 vs. uniprot
Match: A0A4Y7NIC2_9CRUS (DDB1- and CUL4-associated factor 13 n=1 Tax=Moina brachiata TaxID=675436 RepID=A0A4Y7NIC2_9CRUS)

HSP 1 Score: 144 bits (363), Expect = 7.250e-39
Identity = 69/120 (57.50%), Postives = 87/120 (72.50%), Query Frame = 1 
Query:    1 PFLSFLFPVGSEDNNAYTFDVRKLSEAAVVHGGHVKAVMDVAFSPTGTELVTGSYDCTLRIFGAQMRRSRDVYHLRRMQRVFAVRWSADDKYIFSGSDEANIRVWKARAAERIAPLSAKE 360
            P  +F+F V +ED N YTFD+RKL E   +H  HV AV+DV +SPTG ELV+ SYD T+RI+      SRDVYH +RMQR+  V WS DDKYI+SGSDE NIR+WKARAAE++  +  +E
Sbjct:  248 PMEAFIFTVANEDYNLYTFDMRKLDEPINIHRDHVSAVIDVDYSPTGKELVSASYDKTIRIYETNKTHSRDVYHTKRMQRLTCVSWSLDDKYIYSGSDEMNIRIWKARAAEKLGVVKPRE 367
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BLAST of mRNA_M-pyrifera_M_contig98095.22588.1 vs. uniprot
Match: A0A6P4ZG13_BRABE (DDB1- and CUL4-associated factor 13 n=3 Tax=Branchiostoma TaxID=7737 RepID=A0A6P4ZG13_BRABE)

HSP 1 Score: 144 bits (363), Expect = 7.490e-39
Identity = 65/120 (54.17%), Postives = 92/120 (76.67%), Query Frame = 1 
Query:    1 PFLSFLFPVGSEDNNAYTFDVRKLSEAAVVHGGHVKAVMDVAFSPTGTELVTGSYDCTLRIFGAQMRRSRDVYHLRRMQRVFAVRWSADDKYIFSGSDEANIRVWKARAAERIAPLSAKE 360
            P  +F+F V +ED+N Y+FD+R+L+    +H  HV AV+D+ +SPTG E V+GS+D T+RIF  +  RSR+VYH +RMQRVF ++WS D+KYI SGSDE N+R+WKA+AAE+I  L+ +E
Sbjct:  249 PMEAFVFTVANEDHNLYSFDIRRLTSPFNIHMDHVNAVLDLDYSPTGREFVSGSFDKTIRIFPLEKGRSREVYHTKRMQRVFCIKWSLDNKYILSGSDETNVRIWKAKAAEKIGKLTPRE 368
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BLAST of mRNA_M-pyrifera_M_contig98095.22588.1 vs. uniprot
Match: F2USP9_SALR5 (DDB1- and CUL4-associated factor 13 n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2USP9_SALR5)

HSP 1 Score: 144 bits (363), Expect = 1.910e-38
Identity = 68/117 (58.12%), Postives = 87/117 (74.36%), Query Frame = 1 
Query:   10 SFLFPVGSEDNNAYTFDVRKLSEAAVVHGGHVKAVMDVAFSPTGTELVTGSYDCTLRIFGAQMRRSRDVYHLRRMQRVFAVRWSADDKYIFSGSDEANIRVWKARAAERIAPLSAKE 360
            +F F V +ED+N YTFD+RK+  A + H  HV AVMD+++SPTG E  T SYDC+LRIF  +   SR+VYH +RMQRVF V+W+ D+KYI SGSDE NIRVWKA A E+I   SA++
Sbjct:  245 AFNFTVANEDHNCYTFDMRKMKRALMAHQDHVSAVMDISYSPTGREFATASYDCSLRIFDHRSGHSREVYHTKRMQRVFCVKWANDNKYITSGSDETNIRVWKATAWEKIGTQSARQ 361
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BLAST of mRNA_M-pyrifera_M_contig98095.22588.1 vs. uniprot
Match: A0A6F9DB68_9ASCI (DDB1- and CUL4-associated factor 13 n=1 Tax=Phallusia mammillata TaxID=59560 RepID=A0A6F9DB68_9ASCI)

HSP 1 Score: 143 bits (360), Expect = 2.190e-38
Identity = 65/120 (54.17%), Postives = 91/120 (75.83%), Query Frame = 1 
Query:    1 PFLSFLFPVGSEDNNAYTFDVRKLSEAAVVHGGHVKAVMDVAFSPTGTELVTGSYDCTLRIFGAQMRRSRDVYHLRRMQRVFAVRWSADDKYIFSGSDEANIRVWKARAAERIAPLSAKE 360
            P  +F+F   +ED+N YTFD+R L+ A  VH  H  AV+DV ++PTG E V+GSYD ++RIF +   RSRDVYH +RMQRVF V+WS+D++Y+ SGSDE N+R+WKARA+E++  L+ +E
Sbjct:  247 PMEAFVFTAANEDHNLYTFDMRNLNFAMNVHTDHADAVLDVDYAPTGKEFVSGSYDRSIRIFPSNRSRSRDVYHTKRMQRVFCVKWSSDNRYLLSGSDETNVRIWKARASEKLGTLTPRE 366
[Close]
BLAST of mRNA_M-pyrifera_M_contig98095.22588.1 vs. uniprot
Match: UPI0018858505 (DDB1- and CUL4-associated factor 13-like n=1 Tax=Pollicipes pollicipes TaxID=41117 RepID=UPI0018858505)

HSP 1 Score: 142 bits (359), Expect = 2.830e-38
Identity = 67/120 (55.83%), Postives = 87/120 (72.50%), Query Frame = 1 
Query:    1 PFLSFLFPVGSEDNNAYTFDVRKLSEAAVVHGGHVKAVMDVAFSPTGTELVTGSYDCTLRIFGAQMRRSRDVYHLRRMQRVFAVRWSADDKYIFSGSDEANIRVWKARAAERIAPLSAKE 360
            P  +F+F   +ED N Y++D+R+L    V+H  HV AV+DV +SPTG E V+G YD TLRIFGA+   SRD+YH RRMQRV  V WS DDKY+ SGSDE N+R+WKARA+E++  L  +E
Sbjct:  248 PMEAFVFTAANEDYNLYSWDMRRLRRPLVIHKDHVSAVIDVDYSPTGREFVSGGYDKTLRIFGAREAHSRDIYHTRRMQRVACVCWSGDDKYVLSGSDEMNVRLWKARASEKLGVLKERE 367
[Close]
BLAST of mRNA_M-pyrifera_M_contig98095.22588.1 vs. uniprot
Match: A0A2T0FEH7_9ASCO (DDB1- and CUL4-associated factor 13 n=1 Tax=Wickerhamiella sorbophila TaxID=45607 RepID=A0A2T0FEH7_9ASCO)

HSP 1 Score: 142 bits (359), Expect = 2.870e-38
Identity = 72/120 (60.00%), Postives = 88/120 (73.33%), Query Frame = 1 
Query:    1 PFLSFLFPVGSEDNNAYTFDVRKLSEAAVVHGGHVKAVMDVAFSPTGTELVTGSYDCTLRIFGAQMRRSRDVYHLRRMQRVFAVRWSADDKYIFSGSDEANIRVWKARAAERIAPLSAKE 360
            P  +F F VGSED+NAY +D+R L  A  V+  HV AVMDV FSPTG ELVTGSYD T+RIF  Q   SRD+YH +RMQRVF+VR+S D KYI SGSD+ N+RVW+A A ER +  S ++
Sbjct:  244 PMEAFNFAVGSEDHNAYLYDMRNLKRALNVYKDHVAAVMDVDFSPTGQELVTGSYDRTIRIFKLQEGHSRDIYHTKRMQRVFSVRYSMDSKYILSGSDDGNVRVWRANANERSSVKSTRQ 363
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig98095.22588.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001E1DC2574.900e-4060.00DDB1- and CUL4-associated factor 13-like n=1 Tax=M... [more]
K1QGW5_CRAGI3.700e-3960.00DDB1- and CUL4-associated factor 13 n=2 Tax=Crasso... [more]
A0A8I6TL15_CIMLE5.180e-3955.83DDB1- and CUL4-associated factor 13 n=1 Tax=Cimex ... [more]
UPI0005D0B1165.440e-3958.33DDB1- and CUL4-associated factor 13 n=1 Tax=Plutel... [more]
A0A4Y7NIC2_9CRUS7.250e-3957.50DDB1- and CUL4-associated factor 13 n=1 Tax=Moina ... [more]
A0A6P4ZG13_BRABE7.490e-3954.17DDB1- and CUL4-associated factor 13 n=3 Tax=Branch... [more]
F2USP9_SALR51.910e-3858.12DDB1- and CUL4-associated factor 13 n=1 Tax=Salpin... [more]
A0A6F9DB68_9ASCI2.190e-3854.17DDB1- and CUL4-associated factor 13 n=1 Tax=Phallu... [more]
UPI00188585052.830e-3855.83DDB1- and CUL4-associated factor 13-like n=1 Tax=P... [more]
A0A2T0FEH7_9ASCO2.870e-3860.00DDB1- and CUL4-associated factor 13 n=1 Tax=Wicker... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig98095contigM-pyrifera_M_contig98095:342..701 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score146.4
Seed ortholog evalue8.8e-33
Seed eggNOG ortholog946362.XP_004987843.1
Preferred nameDCAF13
KEGG koko:K11806
Hectar predicted targeting categoryother localisation
GOsGO:0000151,GO:0000462,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0006139,GO:0006364,GO:0006396,GO:0006464,GO:0006725,GO:0006807,GO:0008134,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0015630,GO:0016070,GO:0016072,GO:0019538,GO:0022613,GO:0030054,GO:0030331,GO:0030490,GO:0030515,GO:0030684,GO:0030686,GO:0031461,GO:0031974,GO:0031981,GO:0032040,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0035257,GO:0035258,GO:0036211,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043687,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0051427,GO:0070013,GO:0071704,GO:0071840,GO:0080008,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1902494,GO:1990234,GO:1990904
EggNOG free text desc.maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
EggNOG OGs38DW3@33154,KOG0268@1,KOG0268@2759
COG Functional cat.A
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009,ko04121
Exons1
Model size360
Cds size360
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816898.2704697-CDS-M-pyrifera_M_contig98095:341..7011622816898.2704697-CDS-M-pyrifera_M_contig98095:341..701Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig98095 342..701 +
1692278243.450439-CDS-M-pyrifera_M_contig98095:341..7011692278243.450439-CDS-M-pyrifera_M_contig98095:341..701Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig98095 342..701 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig98095.22588.1prot_M-pyrifera_M_contig98095.22588.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig98095 342..701 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig98095.22588.1

>prot_M-pyrifera_M_contig98095.22588.1 ID=prot_M-pyrifera_M_contig98095.22588.1|Name=mRNA_M-pyrifera_M_contig98095.22588.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=120bp
PFLSFLFPVGSEDNNAYTFDVRKLSEAAVVHGGHVKAVMDVAFSPTGTEL
VTGSYDCTLRIFGAQMRRSRDVYHLRRMQRVFAVRWSADDKYIFSGSDEA
NIRVWKARAAERIAPLSAKE
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mRNA from alignment at M-pyrifera_M_contig98095:342..701+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig98095.22588.1 ID=mRNA_M-pyrifera_M_contig98095.22588.1|Name=mRNA_M-pyrifera_M_contig98095.22588.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=360bp|location=Sequence derived from alignment at M-pyrifera_M_contig98095:342..701+ (Macrocystis pyrifera P11B4 male)
CCTTTTCTCTCTTTTCTTTTCCCAGTTGGTAGCGAGGACAACAACGCGTA
CACGTTCGACGTGCGGAAGCTTTCGGAGGCGGCGGTGGTGCATGGTGGCC
ACGTGAAGGCGGTGATGGACGTTGCCTTTTCTCCGACTGGCACGGAGTTG
GTGACGGGGAGTTACGACTGCACGCTTCGCATTTTCGGGGCGCAAATGCG
TCGGTCTCGGGACGTGTATCATTTGCGTCGCATGCAGCGCGTGTTCGCGG
TGCGTTGGAGCGCTGACGACAAGTACATTTTCTCGGGCAGCGACGAGGCC
AACATTCGCGTGTGGAAGGCTCGAGCCGCTGAGAGAATCGCCCCTCTGTC
CGCCAAGGAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig98095:342..701+

>mRNA_M-pyrifera_M_contig98095.22588.1 ID=mRNA_M-pyrifera_M_contig98095.22588.1|Name=mRNA_M-pyrifera_M_contig98095.22588.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=720bp|location=Sequence derived from alignment at M-pyrifera_M_contig98095:342..701+ (Macrocystis pyrifera P11B4 male)
CCTTTTCTCTCTTTTCTTTTCCCAGTTGGTAGCGAGGACAACAACGCGTA
CACGTTCGACGTGCGGAAGCTTTCGGAGGCGGCGGTGGTGCATGGTGGCC
ACGTGAAGGCGGTGATGGACGTTGCCTTTTCTCCGACTGGCACGGAGTTG
GTGACGGGGAGTTACGACTGCACGCTTCGCATTTTCGGGGCGCAAATGCG
TCGGTCTCGGGACGTGTATCATTTGCGTCGCATGCAGCGCGTGTTCGCGG
TGCGTTGGAGCGCTGACGACAAGTACATTTTCTCGGGCAGCGACGAGGCC
AACATTCGCGTGTGGAAGGCTCGAGCCGCTGAGAGAATCGCCCCTCTGTC
CGCCAAGGAACCTTTTCTCTCTTTTCTTTTCCCAGTTGGTAGCGAGGACA
ACAACGCGTACACGTTCGACGTGCGGAAGCTTTCGGAGGCGGCGGTGGTG
CATGGTGGCCACGTGAAGGCGGTGATGGACGTTGCCTTTTCTCCGACTGG
CACGGAGTTGGTGACGGGGAGTTACGACTGCACGCTTCGCATTTTCGGGG
CGCAAATGCGTCGGTCTCGGGACGTGTATCATTTGCGTCGCATGCAGCGC
GTGTTCGCGGTGCGTTGGAGCGCTGACGACAAGTACATTTTCTCGGGCAG
CGACGAGGCCAACATTCGCGTGTGGAAGGCTCGAGCCGCTGAGAGAATCG
CCCCTCTGTCCGCCAAGGAA
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