mRNA_M-pyrifera_M_contig98065.22580.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig98065.22580.1
Unique NamemRNA_M-pyrifera_M_contig98065.22580.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig98065.22580.1 vs. uniprot
Match: UPI00145A363C (DUF2189 domain-containing protein n=1 Tax=Nitratireductor sp. XY-223 TaxID=2561926 RepID=UPI00145A363C)

HSP 1 Score: 192 bits (488), Expect = 5.170e-59
Identity = 96/132 (72.73%), Postives = 113/132 (85.61%), Query Frame = 1
Query:    1 FVAWMVVAQSIYEWLYGAAQPTSIFSFIGDVLTTQRGWALIIVGNTVGFVFAVVVLCTTVIAFPLLLDRNVGITSAIGTSIRAVRTNPVPMAAWGLIVSLALLIGAIPMLIGLAITIPVLGHATWHLYRKVI 396
            FVAWM  AQ+IY+ LYG A P SI++F+G VL+TQ+GW LIIVGN VGFVFA+VVLCTTVIAFPLLLDR+VG  SAI TS+RAV  NPV M  WGLIV++ LLIG+IP+L+GLAI +PVLGHATWHLYRKV+
Sbjct:  131 FVAWMYAAQAIYQGLYGQAAPDSIWAFVGSVLSTQQGWMLIIVGNAVGFVFALVVLCTTVIAFPLLLDRDVGAYSAIETSVRAVAANPVQMILWGLIVAITLLIGSIPLLVGLAIVMPVLGHATWHLYRKVV 262          
BLAST of mRNA_M-pyrifera_M_contig98065.22580.1 vs. uniprot
Match: A0A0Q6M4E3_9HYPH (Cytochrome C oxidase subunit I n=14 Tax=Phyllobacteriaceae TaxID=69277 RepID=A0A0Q6M4E3_9HYPH)

HSP 1 Score: 187 bits (475), Expect = 9.030e-57
Identity = 88/133 (66.17%), Postives = 112/133 (84.21%), Query Frame = 1
Query:    1 FVAWMVVAQSIYEWLYGAAQPTSIFSFIGDVLTTQRGWALIIVGNTVGFVFAVVVLCTTVIAFPLLLDRNVGITSAIGTSIRAVRTNPVPMAAWGLIVSLALLIGAIPMLIGLAITIPVLGHATWHLYRKVIE 399
            FVAW++VAQ +Y WLYGA  P S  +F  D+ TTQRGW LI++GN +GF+FA+VVLCTTV+AFPLLLD +VG  +A+ TS+RAV++NPVPM  WGLIV++ALLIG++P L GLA+ IPVLGHATWHLYRKV++
Sbjct:  131 FVAWLLVAQGLYAWLYGADAPQSTAAFFEDLFTTQRGWTLIVLGNLIGFLFALVVLCTTVVAFPLLLDCDVGAYAAVETSVRAVQSNPVPMLLWGLIVAVALLIGSLPFLAGLAVVIPVLGHATWHLYRKVVD 263          
BLAST of mRNA_M-pyrifera_M_contig98065.22580.1 vs. uniprot
Match: A0A7R7H980_9HYPH (Uncharacterized protein n=2 Tax=unclassified Mesorhizobium TaxID=325217 RepID=A0A7R7H980_9HYPH)

HSP 1 Score: 186 bits (473), Expect = 1.710e-56
Identity = 91/133 (68.42%), Postives = 111/133 (83.46%), Query Frame = 1
Query:    1 FVAWMVVAQSIYEWLYGAAQPTSIFSFIGDVLTTQRGWALIIVGNTVGFVFAVVVLCTTVIAFPLLLDRNVGITSAIGTSIRAVRTNPVPMAAWGLIVSLALLIGAIPMLIGLAITIPVLGHATWHLYRKVIE 399
            FV W++VAQ +Y WLYG+A P S  +F+GD+ TTQRGW LIIVGN +GF+FA+VVL TTVIAFPLLLD +VG  +AI TS R+V  NPVPM  WGLIV++ALLIG+IP+L GLA+ IPVLGHATWHLYRKV++
Sbjct:  131 FVTWLLVAQGLYAWLYGSAAPESTAAFLGDLFTTQRGWTLIIVGNLIGFLFALVVLSTTVIAFPLLLDCDVGAYAAIETSARSVLANPVPMLLWGLIVAVALLIGSIPLLAGLAVVIPVLGHATWHLYRKVVD 263          
BLAST of mRNA_M-pyrifera_M_contig98065.22580.1 vs. uniprot
Match: H0HKZ4_9HYPH (Cytochrome c oxidase subunit I n=2 Tax=Mesorhizobium TaxID=68287 RepID=H0HKZ4_9HYPH)

HSP 1 Score: 184 bits (466), Expect = 1.390e-55
Identity = 86/134 (64.18%), Postives = 111/134 (82.84%), Query Frame = 1
Query:    1 FVAWMVVAQSIYEWLYGAAQPTSIFSFIGDVLTTQRGWALIIVGNTVGFVFAVVVLCTTVIAFPLLLDRNVGITSAIGTSIRAVRTNPVPMAAWGLIVSLALLIGAIPMLIGLAITIPVLGHATWHLYRKVIET 402
            F+AW++ AQ+++ WLYGA  PTSI  F+ DV TTQRGW LI++GN +GF+FA+VVL TTVIAFPLLLDR+VG  +AI TS R +  NPVP+  WGLIV++AL+ G++P+ +GLAI IPVLGH+TWHLYRKV+ET
Sbjct:  133 FIAWLLAAQALFNWLYGADVPTSITGFVSDVFTTQRGWTLILLGNAIGFLFALVVLSTTVIAFPLLLDRDVGAYAAIETSARVMIANPVPIVLWGLIVAVALVAGSLPLFVGLAIVIPVLGHSTWHLYRKVVET 266          
BLAST of mRNA_M-pyrifera_M_contig98065.22580.1 vs. uniprot
Match: A0A502YER2_9HYPH (DUF2189 domain-containing protein n=8 Tax=Mesorhizobium TaxID=68287 RepID=A0A502YER2_9HYPH)

HSP 1 Score: 183 bits (465), Expect = 2.610e-55
Identity = 86/133 (64.66%), Postives = 113/133 (84.96%), Query Frame = 1
Query:    1 FVAWMVVAQSIYEWLYGAAQPTSIFSFIGDVLTTQRGWALIIVGNTVGFVFAVVVLCTTVIAFPLLLDRNVGITSAIGTSIRAVRTNPVPMAAWGLIVSLALLIGAIPMLIGLAITIPVLGHATWHLYRKVIE 399
            F+AW+V A+++Y +LYG A P S F FI DVLTTQRGW LII+GN +GF+FA+VVL TTV+AFPLLLDR++G  +A+ TS RAV TNPVP+  WGLIV++AL +G++P+L+GLA+ +PVLGH+TWHLYRK+IE
Sbjct:  132 FIAWLVTARALYGYLYGDAAPASFFGFIADVLTTQRGWTLIILGNLIGFLFALVVLSTTVVAFPLLLDRDIGAYAAVETSARAVITNPVPLLLWGLIVAVALGLGSLPLLVGLAVVLPVLGHSTWHLYRKLIE 264          
BLAST of mRNA_M-pyrifera_M_contig98065.22580.1 vs. uniprot
Match: A0A2N5AW69_RHILI (Uncharacterized protein n=1 Tax=Rhizobium loti TaxID=381 RepID=A0A2N5AW69_RHILI)

HSP 1 Score: 182 bits (461), Expect = 1.050e-54
Identity = 87/133 (65.41%), Postives = 111/133 (83.46%), Query Frame = 1
Query:    1 FVAWMVVAQSIYEWLYGAAQPTSIFSFIGDVLTTQRGWALIIVGNTVGFVFAVVVLCTTVIAFPLLLDRNVGITSAIGTSIRAVRTNPVPMAAWGLIVSLALLIGAIPMLIGLAITIPVLGHATWHLYRKVIE 399
            F AWM+ A ++Y  LYG A P S+F FIGDVLTT+RGW LII+GN +GF+FA+VVL TTV+AFPLLLDR++G  +AI TS RAV TNPVP+  WGLIV++AL  G++P+L+GLA+ +PVLGH+TWHLYRK+IE
Sbjct:  131 FAAWMLTAHALYARLYGDAVPASLFGFIGDVLTTKRGWMLIILGNFIGFLFALVVLSTTVVAFPLLLDRDIGAYAAIETSARAVMTNPVPLLLWGLIVAVALAAGSLPLLVGLAVVLPVLGHSTWHLYRKLIE 263          
BLAST of mRNA_M-pyrifera_M_contig98065.22580.1 vs. uniprot
Match: X6IDW2_9HYPH (Cytochrome C oxidase subunit I n=36 Tax=Bacteria TaxID=2 RepID=X6IDW2_9HYPH)

HSP 1 Score: 180 bits (457), Expect = 2.910e-54
Identity = 82/133 (61.65%), Postives = 109/133 (81.95%), Query Frame = 1
Query:    1 FVAWMVVAQSIYEWLYGAAQPTSIFSFIGDVLTTQRGWALIIVGNTVGFVFAVVVLCTTVIAFPLLLDRNVGITSAIGTSIRAVRTNPVPMAAWGLIVSLALLIGAIPMLIGLAITIPVLGHATWHLYRKVIE 399
            F+AW++ AQ  YE+L+G A P SI  FI ++  T RGW+LI++G+ +GFVFA VVLCTTV+AFPLLLDR+VG   AI TS+RAV  NP+PMA WGLIV++AL+IG++P+  GLA+ +P+LGHATWH+YRKV+E
Sbjct:  131 FIAWLLAAQVFYEYLFGPAPPVSISGFINEIFATGRGWSLIVLGHAIGFVFAAVVLCTTVVAFPLLLDRDVGAYEAIHTSVRAVLANPIPMAVWGLIVAVALIIGSLPVFAGLAVVLPILGHATWHVYRKVVE 263          
BLAST of mRNA_M-pyrifera_M_contig98065.22580.1 vs. uniprot
Match: A0A7X0FCW9_9HYPH (Putative membrane protein n=1 Tax=Aminobacter aganoensis TaxID=83264 RepID=A0A7X0FCW9_9HYPH)

HSP 1 Score: 177 bits (450), Expect = 6.380e-54
Identity = 81/133 (60.90%), Postives = 106/133 (79.70%), Query Frame = 1
Query:    1 FVAWMVVAQSIYEWLYGAAQPTSIFSFIGDVLTTQRGWALIIVGNTVGFVFAVVVLCTTVIAFPLLLDRNVGITSAIGTSIRAVRTNPVPMAAWGLIVSLALLIGAIPMLIGLAITIPVLGHATWHLYRKVIE 399
            F+ W+  AQ+++ WLYG + P + F    DVLTTQRGW LII+GN +GF+FA+V L TTVIAFPLLLDR++G  +A+ TS RA+  NP+PM  WGLIV++ L+IG +P+L+GLAI +PVLGH+TWHLYRKVIE
Sbjct:   75 FIVWLFTAQALFSWLYGDSAPATFFGLASDVLTTQRGWTLIILGNVIGFLFALVALSTTVIAFPLLLDRDIGAYAAVETSARAIMANPMPMLLWGLIVAVGLVIGTLPLLVGLAIVLPVLGHSTWHLYRKVIE 207          
BLAST of mRNA_M-pyrifera_M_contig98065.22580.1 vs. uniprot
Match: A0A5B8L0W5_9HYPH (DUF2189 domain-containing protein n=1 Tax=Nitratireductor sp. SY7 TaxID=2599600 RepID=A0A5B8L0W5_9HYPH)

HSP 1 Score: 179 bits (455), Expect = 6.730e-54
Identity = 87/138 (63.04%), Postives = 112/138 (81.16%), Query Frame = 1
Query:    1 FVAWMVVAQSIYEWLYGAAQPTSIFSFIGDVLTTQRGWALIIVGNTVGFVFAVVVLCTTVIAFPLLLDRNVGITSAIGTSIRAVRTNPVPMAAWGLIVSLALLIGAIPMLIGLAITIPVLGHATWHLYRK-VIETDKP 411
            F+ W+  AQ++Y WL+G  QP SI +F+ ++ TTQ+GW LIIVGN VGF+FA+VVL TTVIAFPLLLDR+VG  +AI TS RAV  NPVPM  WGLIV++AL++G++P+L GLA+ IPVLGH+TWHLYRK ++ T KP
Sbjct:  131 FLVWLYSAQALYAWLFGTGQPQSIGAFLSNLFTTQQGWTLIIVGNVVGFLFALVVLATTVIAFPLLLDRDVGAYAAIETSARAVLANPVPMLFWGLIVAVALVVGSLPLLAGLAVVIPVLGHSTWHLYRKAIVSTGKP 268          
BLAST of mRNA_M-pyrifera_M_contig98065.22580.1 vs. uniprot
Match: A0A1I3WD22_9HYPH (Uncharacterized membrane protein n=1 Tax=Mesorhizobium albiziae TaxID=335020 RepID=A0A1I3WD22_9HYPH)

HSP 1 Score: 178 bits (451), Expect = 2.090e-53
Identity = 87/133 (65.41%), Postives = 106/133 (79.70%), Query Frame = 1
Query:    1 FVAWMVVAQSIYEWLYGAAQPTSIFSFIGDVLTTQRGWALIIVGNTVGFVFAVVVLCTTVIAFPLLLDRNVGITSAIGTSIRAVRTNPVPMAAWGLIVSLALLIGAIPMLIGLAITIPVLGHATWHLYRKVIE 399
            FVAW++ AQ IY+W +G   P S+ SFI +VL TQRGW LIIVGN VG +FA+VVL TTVIAFP+LLDR++G   AI TS +AV TNPV MA WGLIV+  L+IG+IP+  GLA+ IP+LGHATWHLYRK+IE
Sbjct:  131 FVAWLLTAQGIYQWYFGPTPPESLSSFISEVLGTQRGWMLIIVGNLVGLIFAIVVLATTVIAFPILLDRDIGAYDAIYTSAKAVMTNPVTMAIWGLIVAALLVIGSIPVFAGLAVVIPILGHATWHLYRKLIE 263          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig98065.22580.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00145A363C5.170e-5972.73DUF2189 domain-containing protein n=1 Tax=Nitratir... [more]
A0A0Q6M4E3_9HYPH9.030e-5766.17Cytochrome C oxidase subunit I n=14 Tax=Phyllobact... [more]
A0A7R7H980_9HYPH1.710e-5668.42Uncharacterized protein n=2 Tax=unclassified Mesor... [more]
H0HKZ4_9HYPH1.390e-5564.18Cytochrome c oxidase subunit I n=2 Tax=Mesorhizobi... [more]
A0A502YER2_9HYPH2.610e-5564.66DUF2189 domain-containing protein n=8 Tax=Mesorhiz... [more]
A0A2N5AW69_RHILI1.050e-5465.41Uncharacterized protein n=1 Tax=Rhizobium loti Tax... [more]
X6IDW2_9HYPH2.910e-5461.65Cytochrome C oxidase subunit I n=36 Tax=Bacteria T... [more]
A0A7X0FCW9_9HYPH6.380e-5460.90Putative membrane protein n=1 Tax=Aminobacter agan... [more]
A0A5B8L0W5_9HYPH6.730e-5463.04DUF2189 domain-containing protein n=1 Tax=Nitratir... [more]
A0A1I3WD22_9HYPH2.090e-5365.41Uncharacterized membrane protein n=1 Tax=Mesorhizo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig98065contigM-pyrifera_M_contig98065:285..701 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score178.3
Seed ortholog evalue2.4e-42
Seed eggNOG ortholog1040987.AZUY01000038_gene657
Preferred nameMA20_41380
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.Predicted integral membrane protein (DUF2189)
EggNOG OGs1MVRU@1224,2TRUD@28211,43HT3@69277,COG5473@1,COG5473@2
COG Functional cat.S
Best tax levelPhyllobacteriaceae
Best eggNOG OGNA|NA|NA
Exons1
Model size417
Cds size405
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816897.943548-CDS-M-pyrifera_M_contig98065:284..6891622816897.943548-CDS-M-pyrifera_M_contig98065:284..689Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig98065 285..689 -
1692278243.3004417-CDS-M-pyrifera_M_contig98065:284..6891692278243.3004417-CDS-M-pyrifera_M_contig98065:284..689Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig98065 285..689 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816897.9568658-UTR-M-pyrifera_M_contig98065:689..7011622816897.9568658-UTR-M-pyrifera_M_contig98065:689..701Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig98065 690..701 -
1692278243.3106937-UTR-M-pyrifera_M_contig98065:689..7011692278243.3106937-UTR-M-pyrifera_M_contig98065:689..701Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig98065 690..701 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig98065.22580.1prot_M-pyrifera_M_contig98065.22580.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig98065 285..689 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig98065.22580.1

>prot_M-pyrifera_M_contig98065.22580.1 ID=prot_M-pyrifera_M_contig98065.22580.1|Name=mRNA_M-pyrifera_M_contig98065.22580.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=135bp
MVVAQSIYEWLYGAAQPTSIFSFIGDVLTTQRGWALIIVGNTVGFVFAVV
VLCTTVIAFPLLLDRNVGITSAIGTSIRAVRTNPVPMAAWGLIVSLALLI
GAIPMLIGLAITIPVLGHATWHLYRKVIETDKPI*
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mRNA from alignment at M-pyrifera_M_contig98065:285..701-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig98065.22580.1 ID=mRNA_M-pyrifera_M_contig98065.22580.1|Name=mRNA_M-pyrifera_M_contig98065.22580.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=417bp|location=Sequence derived from alignment at M-pyrifera_M_contig98065:285..701- (Macrocystis pyrifera P11B4 male)
TTTGTCGCCTGGATGGTCGTGGCCCAGTCCATTTATGAATGGCTCTACGG CGCGGCACAACCAACGTCAATTTTCAGTTTCATCGGTGACGTCCTGACGA CACAGCGCGGATGGGCACTGATAATCGTCGGCAATACCGTCGGCTTTGTC TTCGCCGTCGTGGTGCTGTGTACAACGGTGATTGCATTTCCCCTGCTGCT GGACCGCAATGTCGGCATCACATCGGCCATCGGCACGTCGATCCGCGCCG TCAGGACAAACCCCGTGCCGATGGCGGCTTGGGGATTGATCGTTTCGCTC GCCCTGTTGATCGGTGCGATACCGATGCTGATCGGGCTCGCAATCACCAT TCCCGTGCTCGGCCATGCCACCTGGCATCTCTATCGCAAGGTAATCGAAA CGGACAAACCGATCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig98065:285..701-

>mRNA_M-pyrifera_M_contig98065.22580.1 ID=mRNA_M-pyrifera_M_contig98065.22580.1|Name=mRNA_M-pyrifera_M_contig98065.22580.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=810bp|location=Sequence derived from alignment at M-pyrifera_M_contig98065:285..701- (Macrocystis pyrifera P11B4 male)
ATGGTCGTGGCCCAGTCCATTTATGAATGGCTCTACGGCGCGGCACAACC
AACGTCAATTTTCAGTTTCATCGGTGACGTCCTGACGACACAGCGCGGAT
GGGCACTGATAATCGTCGGCAATACCGTCGGCTTTGTCTTCGCCGTCGTG
GTGCTGTGTACAACGGTGATTGCATTTCCCCTGCTGCTGGACCGCAATGT
CGGCATCACATCGGCCATCGGCACGTCGATCCGCGCCGTCAGGACAAACC
CCGTGCCGATGGCGGCTTGGGGATTGATCGTTTCGCTCGCCCTGTTGATC
GGTGCGATACCGATGCTGATCGGGCTCGCAATCACCATTCCCGTGCTCGG
CCATGCCACCTGGCATCTCTATCGCAAGGTAATCGAAACGGACAAACCGA
TCTGAATGGTCGTGGCCCAGTCCATTTATGAATGGCTCTACGGCGCGGCA
CAACCAACGTCAATTTTCAGTTTCATCGGTGACGTCCTGACGACACAGCG
CGGATGGGCACTGATAATCGTCGGCAATACCGTCGGCTTTGTCTTCGCCG
TCGTGGTGCTGTGTACAACGGTGATTGCATTTCCCCTGCTGCTGGACCGC
AATGTCGGCATCACATCGGCCATCGGCACGTCGATCCGCGCCGTCAGGAC
AAACCCCGTGCCGATGGCGGCTTGGGGATTGATCGTTTCGCTCGCCCTGT
TGATCGGTGCGATACCGATGCTGATCGGGCTCGCAATCACCATTCCCGTG
CTCGGCCATGCCACCTGGCATCTCTATCGCAAGGTAATCGAAACGGACAA
ACCGATCTGA
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