mRNA_M-pyrifera_M_contig97898.22533.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig97898.22533.1
Unique NamemRNA_M-pyrifera_M_contig97898.22533.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig97898.22533.1 vs. uniprot
Match: A0A1B6YE65_9BACT (Peptidase_M14 domain-containing protein n=7 Tax=Bacteroidetes/Chlorobi group TaxID=68336 RepID=A0A1B6YE65_9BACT)

HSP 1 Score: 129 bits (325), Expect = 1.820e-32
Identity = 64/89 (71.91%), Postives = 73/89 (82.02%), Query Frame = 1 
Query:    1 YTRYADRSDSSGLRRIPGSGFKGIIDNTHPLAFGMKDRLYSLKFSTNGLMPNTSFSTVGYYSKEE--ALASGYASNKNKKNAEGMAFAA 261
            YTRY D+ DSSGLRRIPGS FK +IDN+HPLAFGMKD+LYSLKFSTN L P+ SFS+VGYY K+    LASGYAS +NK+ A G AFAA
Sbjct:  738 YTRYKDQEDSSGLRRIPGSAFKAMIDNSHPLAFGMKDKLYSLKFSTNALKPDPSFSSVGYYVKDADGVLASGYASEENKEKAAGKAFAA 826
[Close]
BLAST of mRNA_M-pyrifera_M_contig97898.22533.1 vs. uniprot
Match: UPI00037DD8F6 (M14 family metallopeptidase n=1 Tax=Balneola vulgaris TaxID=287535 RepID=UPI00037DD8F6)

HSP 1 Score: 126 bits (317), Expect = 2.180e-31
Identity = 61/89 (68.54%), Postives = 74/89 (83.15%), Query Frame = 1 
Query:    1 YTRYADRSDSSGLRRIPGSGFKGIIDNTHPLAFGMKDRLYSLKFSTNGLMPNTSFSTVGYYSK--EEALASGYASNKNKKNAEGMAFAA 261
            YT Y D+SDSSGL+RIPGS FKG++DN+HPLAFGM ++LYSLKFS+N + P+ S S+VGYY K  EE LASGYAS +NK+ A GMAFAA
Sbjct:  740 YTMYKDQSDSSGLKRIPGSAFKGMVDNSHPLAFGMPNKLYSLKFSSNAIKPSPSISSVGYYVKDAEEVLASGYASKENKEKAAGMAFAA 828
[Close]
BLAST of mRNA_M-pyrifera_M_contig97898.22533.1 vs. uniprot
Match: A0A3M8G825_9BACT (Peptidase_M14 domain-containing protein n=1 Tax=Balneola sp. TaxID=2024824 RepID=A0A3M8G825_9BACT)

HSP 1 Score: 125 bits (315), Expect = 4.060e-31
Identity = 61/89 (68.54%), Postives = 71/89 (79.78%), Query Frame = 1 
Query:    1 YTRYADRSDSSGLRRIPGSGFKGIIDNTHPLAFGMKDRLYSLKFSTNGLMPNTSFSTVGYY--SKEEALASGYASNKNKKNAEGMAFAA 261
            YTRY DR DS+GLRRIPGS FK  +DN+HPLAFGM D+LYSLKF T+G+ P+ SF TVGYY    +E LASGY+S +NKKNA G AFAA
Sbjct:  739 YTRYMDREDSTGLRRIPGSAFKAKVDNSHPLAFGMSDKLYSLKFRTDGIKPDPSFHTVGYYLDDPKEVLASGYSSAENKKNAAGKAFAA 827
[Close]
BLAST of mRNA_M-pyrifera_M_contig97898.22533.1 vs. uniprot
Match: A0A521EEB5_9BACT (Zinc carboxypeptidase n=1 Tax=Gracilimonas mengyeensis TaxID=1302730 RepID=A0A521EEB5_9BACT)

HSP 1 Score: 125 bits (313), Expect = 7.550e-31
Identity = 60/88 (68.18%), Postives = 73/88 (82.95%), Query Frame = 1 
Query:    1 YTRYADRSDSSGLRRIPGSGFKGIIDNTHPLAFGMKDRLYSLKFSTNGLMPNTSFSTVGYYSKE--EALASGYASNKNKKNAEGMAFA 258
            YT+YADR D  GL RIPGS FKGIIDNT+PLAFG+ +R+YSLKF+ +GL+P+TS+ TVGYY K+  E LASGYAS +NK+ A GMAFA
Sbjct:  742 YTKYADREDVFGLERIPGSAFKGIIDNTNPLAFGLPERMYSLKFNDDGLVPSTSYQTVGYYVKDSDEVLASGYASQENKEKAAGMAFA 829
[Close]
BLAST of mRNA_M-pyrifera_M_contig97898.22533.1 vs. uniprot
Match: A0A2D8CH22_9BACT (Peptidase_M14 domain-containing protein n=4 Tax=Balneolaceae TaxID=1813606 RepID=A0A2D8CH22_9BACT)

HSP 1 Score: 124 bits (312), Expect = 1.030e-30
Identity = 59/89 (66.29%), Postives = 73/89 (82.02%), Query Frame = 1 
Query:    1 YTRYADRSDSSGLRRIPGSGFKGIIDNTHPLAFGMKDRLYSLKFSTNGLMPNTSFSTVGYYSKE--EALASGYASNKNKKNAEGMAFAA 261
            YT+YADR D  GL RIPGS FKG++D T+PLAFGMK+++YSLKF  +GL+PNT F TVGYY K+  + LASGYAS++NK+ A GMAFAA
Sbjct:  739 YTKYADREDVFGLERIPGSAFKGMLDTTNPLAFGMKEQIYSLKFGDDGLVPNTDFQTVGYYVKDADDVLASGYASDENKEKAAGMAFAA 827
[Close]
BLAST of mRNA_M-pyrifera_M_contig97898.22533.1 vs. uniprot
Match: A0A6A8Q4W3_9BACT (Peptidase_M14 domain-containing protein n=1 Tax=Balneolaceae bacterium TaxID=2053516 RepID=A0A6A8Q4W3_9BACT)

HSP 1 Score: 122 bits (307), Expect = 4.870e-30
Identity = 59/89 (66.29%), Postives = 73/89 (82.02%), Query Frame = 1 
Query:    1 YTRYADRSDSSGLRRIPGSGFKGIIDNTHPLAFGMKDRLYSLKFSTNGLMPNTSFSTVGYYSKE--EALASGYASNKNKKNAEGMAFAA 261
            YTRY +R+D+SGLRRIPGS FK I+DN++PLAFGM D++YSLKF  + L P+ SF TVGYY K+  E LASGYAS++NK+ A GMAFAA
Sbjct:  739 YTRYENRADTSGLRRIPGSAFKAILDNSNPLAFGMPDKMYSLKFGDDALQPDESFQTVGYYVKDAAEVLASGYASSENKEKAAGMAFAA 827
[Close]
BLAST of mRNA_M-pyrifera_M_contig97898.22533.1 vs. uniprot
Match: A0A356X1H4_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Balneolaceae bacterium TaxID=2053516 RepID=A0A356X1H4_9BACT)

HSP 1 Score: 116 bits (291), Expect = 7.140e-30
Identity = 58/88 (65.91%), Postives = 69/88 (78.41%), Query Frame = 1 
Query:    1 YTRYADRSDSSGLRRIPGSGFKGIIDNTHPLAFGMKDRLYSLKFSTNGLMPNTSFSTVGYYSKE-EALASGYASNKNKKNAEGMAFAA 261
            YT+YA R D  GL RIPGS FK  IDNT+PLAFG+ + LYSLKF  +GL+P+T F TVGYY KE E LASGYAS +N++ A+GMAFAA
Sbjct:  122 YTQYAHREDVFGLDRIPGSAFKAHIDNTNPLAFGLPETLYSLKFGDDGLVPSTDFQTVGYYVKEGEVLASGYASEENREEAKGMAFAA 209
[Close]
BLAST of mRNA_M-pyrifera_M_contig97898.22533.1 vs. uniprot
Match: UPI0012FBADBB (M14 family metallopeptidase n=1 Tax=Gracilimonas tropica TaxID=454600 RepID=UPI0012FBADBB)

HSP 1 Score: 120 bits (301), Expect = 3.130e-29
Identity = 59/88 (67.05%), Postives = 69/88 (78.41%), Query Frame = 1 
Query:    1 YTRYADRSDSSGLRRIPGSGFKGIIDNTHPLAFGMKDRLYSLKFSTNGLMPNTSFSTVGYYSKE-EALASGYASNKNKKNAEGMAFAA 261
            YT+YADR D  GL RIPGS FK  IDNTHPLAFG+ + LYSLKF  +GL+P+T F TVGYY KE E LASGYAS +N+  ++GMAFAA
Sbjct:  738 YTKYADREDVFGLDRIPGSAFKARIDNTHPLAFGLPETLYSLKFGDDGLVPSTDFQTVGYYVKEGEVLASGYASEENRDKSKGMAFAA 825
[Close]
BLAST of mRNA_M-pyrifera_M_contig97898.22533.1 vs. uniprot
Match: A0A3D1G771_9BACT (Peptidase_M14 domain-containing protein (Fragment) n=1 Tax=Balneolaceae bacterium TaxID=2053516 RepID=A0A3D1G771_9BACT)

HSP 1 Score: 118 bits (296), Expect = 1.430e-28
Identity = 58/88 (65.91%), Postives = 71/88 (80.68%), Query Frame = 1 
Query:    1 YTRYADRSDSSGLRRIPGSGFKGIIDNTHPLAFGMKDRLYSLKFSTNGLMPNTSFSTVGYYSKE--EALASGYASNKNKKNAEGMAFA 258
            YTRY D +DSSGL+RIPGS FK +IDN++PLAFGM + LYSLKFS++  +P+TS  TVGYY K+  E LASGYAS +NK+NA G AFA
Sbjct:  605 YTRYEDLADSSGLKRIPGSAFKAVIDNSNPLAFGMPETLYSLKFSSDAFVPSTSAQTVGYYMKDADEVLASGYASPENKRNAAGNAFA 692
[Close]
BLAST of mRNA_M-pyrifera_M_contig97898.22533.1 vs. uniprot
Match: A0A2D9FWS2_9BACT (Peptidase_M14 domain-containing protein n=1 Tax=Balneola sp. TaxID=2024824 RepID=A0A2D9FWS2_9BACT)

HSP 1 Score: 116 bits (291), Expect = 7.000e-28
Identity = 58/88 (65.91%), Postives = 69/88 (78.41%), Query Frame = 1 
Query:    1 YTRYADRSDSSGLRRIPGSGFKGIIDNTHPLAFGMKDRLYSLKFSTNGLMPNTSFSTVGYYSKE-EALASGYASNKNKKNAEGMAFAA 261
            YT+YA R D  GL RIPGS FK  IDNT+PLAFG+ + LYSLKF  +GL+P+T F TVGYY KE E LASGYAS +N++ A+GMAFAA
Sbjct:  742 YTQYAHREDVFGLDRIPGSAFKAHIDNTNPLAFGLPETLYSLKFGDDGLVPSTDFQTVGYYVKEGEVLASGYASEENREEAKGMAFAA 829
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig97898.22533.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1B6YE65_9BACT1.820e-3271.91Peptidase_M14 domain-containing protein n=7 Tax=Ba... [more]
UPI00037DD8F62.180e-3168.54M14 family metallopeptidase n=1 Tax=Balneola vulga... [more]
A0A3M8G825_9BACT4.060e-3168.54Peptidase_M14 domain-containing protein n=1 Tax=Ba... [more]
A0A521EEB5_9BACT7.550e-3168.18Zinc carboxypeptidase n=1 Tax=Gracilimonas mengyee... [more]
A0A2D8CH22_9BACT1.030e-3066.29Peptidase_M14 domain-containing protein n=4 Tax=Ba... [more]
A0A6A8Q4W3_9BACT4.870e-3066.29Peptidase_M14 domain-containing protein n=1 Tax=Ba... [more]
A0A356X1H4_9BACT7.140e-3065.91Uncharacterized protein (Fragment) n=1 Tax=Balneol... [more]
UPI0012FBADBB3.130e-2967.05M14 family metallopeptidase n=1 Tax=Gracilimonas t... [more]
A0A3D1G771_9BACT1.430e-2865.91Peptidase_M14 domain-containing protein (Fragment)... [more]
A0A2D9FWS2_9BACT7.000e-2865.91Peptidase_M14 domain-containing protein n=1 Tax=Ba... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig97898contigM-pyrifera_M_contig97898:339..703 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score67.8
Seed ortholog evalue2e-09
Seed eggNOG ortholog1121104.AQXH01000001_gene1384
KEGG koko:K14054
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.PFAM peptidase M14 carboxypeptidase A
EggNOG OGs4NEJA@976,COG2866@1,COG2866@2
COG Functional cat.E
Best tax levelBacteroidetes
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons1
Model size365
Cds size177
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig97898.22533.1prot_M-pyrifera_M_contig97898.22533.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig97898 425..601 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816895.5983634-UTR-M-pyrifera_M_contig97898:338..4241622816895.5983634-UTR-M-pyrifera_M_contig97898:338..424Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig97898 339..424 -
1692278241.9253266-UTR-M-pyrifera_M_contig97898:338..4241692278241.9253266-UTR-M-pyrifera_M_contig97898:338..424Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig97898 339..424 -
1622816895.6236176-UTR-M-pyrifera_M_contig97898:601..7031622816895.6236176-UTR-M-pyrifera_M_contig97898:601..703Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig97898 602..703 -
1692278241.9478002-UTR-M-pyrifera_M_contig97898:601..7031692278241.9478002-UTR-M-pyrifera_M_contig97898:601..703Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig97898 602..703 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816895.6131845-CDS-M-pyrifera_M_contig97898:424..6011622816895.6131845-CDS-M-pyrifera_M_contig97898:424..601Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig97898 425..601 -
1692278241.9373894-CDS-M-pyrifera_M_contig97898:424..6011692278241.9373894-CDS-M-pyrifera_M_contig97898:424..601Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig97898 425..601 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig97898.22533.1

>prot_M-pyrifera_M_contig97898.22533.1 ID=prot_M-pyrifera_M_contig97898.22533.1|Name=mRNA_M-pyrifera_M_contig97898.22533.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=59bp
MKDRLYSLKFSTNGLMPNTSFSTVGYYSKEEALASGYASNKNKKNAEGMA
FAAWSKGK*
back to top

mRNA from alignment at M-pyrifera_M_contig97898:339..703-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig97898.22533.1 ID=mRNA_M-pyrifera_M_contig97898.22533.1|Name=mRNA_M-pyrifera_M_contig97898.22533.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=365bp|location=Sequence derived from alignment at M-pyrifera_M_contig97898:339..703- (Macrocystis pyrifera P11B4 male)
TATACGAGATATGCTGATCGTTCAGACTCTTCAGGCTTGCGAAGAATCCC
AGGCTCTGGATTTAAAGGGATTATTGATAATACACATCCATTAGCGTTCG
GAATGAAAGATAGGCTCTATTCACTCAAATTTAGTACCAATGGATTGATG
CCAAATACCTCATTCAGCACTGTTGGTTATTATTCAAAAGAAGAAGCTTT
GGCTTCTGGGTATGCATCAAATAAGAATAAGAAGAATGCAGAAGGAATGG
CCTTTGCAGCGTGGAGCAAGGGAAAGTAGTGTTCTTGCTAGATAACACTC
AATATAGAATGTTTTGGGTTGGGCCTTCCAGACTAATGCAAAATGCGGTG
ATGTTGGTGCCGGGG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig97898:339..703-

>mRNA_M-pyrifera_M_contig97898.22533.1 ID=mRNA_M-pyrifera_M_contig97898.22533.1|Name=mRNA_M-pyrifera_M_contig97898.22533.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=354bp|location=Sequence derived from alignment at M-pyrifera_M_contig97898:339..703- (Macrocystis pyrifera P11B4 male)
ATGAAAGATAGGCTCTATTCACTCAAATTTAGTACCAATGGATTGATGCC
AAATACCTCATTCAGCACTGTTGGTTATTATTCAAAAGAAGAAGCTTTGG
CTTCTGGGTATGCATCAAATAAGAATAAGAAGAATGCAGAAGGAATGGCC
TTTGCAGCGTGGAGCAAGGGAAAGTAGATGAAAGATAGGCTCTATTCACT
CAAATTTAGTACCAATGGATTGATGCCAAATACCTCATTCAGCACTGTTG
GTTATTATTCAAAAGAAGAAGCTTTGGCTTCTGGGTATGCATCAAATAAG
AATAAGAAGAATGCAGAAGGAATGGCCTTTGCAGCGTGGAGCAAGGGAAA
GTAG
back to top