mRNA_M-pyrifera_M_contig97821.22526.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig97821.22526.1
Unique NamemRNA_M-pyrifera_M_contig97821.22526.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig97821.22526.1 vs. uniprot
Match: A0A356A3P8_9PLAN (Uncharacterized protein n=2 Tax=Planctomycetaceae TaxID=126 RepID=A0A356A3P8_9PLAN)

HSP 1 Score: 55.1 bits (131), Expect = 3.290e-7
Identity = 24/69 (34.78%), Postives = 43/69 (62.32%), Query Frame = 1
Query:    1 PSLHPEMVDCYRNLDKAIQQ-LSTVHSYTARWVRQIRLYGSLRDEEHVDLKIRHQPFSVHMNWMDGSQQ 204
            P   P+ +D +  L +  +  + +VHSY A   +Q+R+ G L+D E ++LK+RH+P++V+M W    Q+
Sbjct:   64 PGQQPDSLDVFMTLLRESEDAIRSVHSYKAILEKQVRIDGVLQDPEEIELKVRHKPYAVYMQWKGDGQE 132          
BLAST of mRNA_M-pyrifera_M_contig97821.22526.1 vs. uniprot
Match: A0A3L7SG14_9BACT (DUF1571 domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3L7SG14_9BACT)

HSP 1 Score: 55.1 bits (131), Expect = 3.480e-7
Identity = 24/52 (46.15%), Postives = 35/52 (67.31%), Query Frame = 1
Query:   40 LDKAIQQLSTVHSYTARWVRQIRLYGSLRDEEHVDLKIRHQPFSVHMNWMDG 195
            L++ +  L+    YTA +V+Q  + G L DE+ V+LKIRH PFSV+M W+ G
Sbjct:   95 LERGLDYLAKTPDYTAAFVKQELVNGELLDEQEVELKIRHAPFSVYMKWVSG 146          
BLAST of mRNA_M-pyrifera_M_contig97821.22526.1 vs. uniprot
Match: F0SIC0_RUBBR (Uncharacterized protein n=2 Tax=Rubinisphaera TaxID=1649490 RepID=F0SIC0_RUBBR)

HSP 1 Score: 54.3 bits (129), Expect = 6.550e-7
Identity = 22/52 (42.31%), Postives = 37/52 (71.15%), Query Frame = 1
Query:   40 LDKAIQQLSTVHSYTARWVRQIRLYGSLRDEEHVDLKIRHQPFSVHMNWMDG 195
            L++ I  L  V SYTA + R+ R+ G +++ + ++LK+RH PFSV+M W++G
Sbjct:  100 LERGIDHLERVPSYTAIFEREERIDGEMKEPQQMELKLRHAPFSVYMKWLNG 151          
BLAST of mRNA_M-pyrifera_M_contig97821.22526.1 vs. uniprot
Match: A0A1I3JZG3_9PLAN (Uncharacterized protein n=1 Tax=Planctomicrobium piriforme TaxID=1576369 RepID=A0A1I3JZG3_9PLAN)

HSP 1 Score: 54.3 bits (129), Expect = 6.600e-7
Identity = 24/52 (46.15%), Postives = 33/52 (63.46%), Query Frame = 1
Query:   40 LDKAIQQLSTVHSYTARWVRQIRLYGSLRDEEHVDLKIRHQPFSVHMNWMDG 195
            L+K     S V  YTA   +Q RL G+L D + +DLK+RH+P+SV+M W  G
Sbjct:  104 LEKGCHNFSKVPDYTACMFKQERLNGALGDGQTIDLKVRHEPYSVYMKWQSG 155          
BLAST of mRNA_M-pyrifera_M_contig97821.22526.1 vs. uniprot
Match: A0A518CMX6_9PLAN (Uncharacterized protein n=1 Tax=Polystyrenella longa TaxID=2528007 RepID=A0A518CMX6_9PLAN)

HSP 1 Score: 54.3 bits (129), Expect = 6.770e-7
Identity = 20/52 (38.46%), Postives = 37/52 (71.15%), Query Frame = 1
Query:   40 LDKAIQQLSTVHSYTARWVRQIRLYGSLRDEEHVDLKIRHQPFSVHMNWMDG 195
            L++ ++ L  +  YT  +++Q R+ GS+ +   ++LKIRH+PFSV+M W++G
Sbjct:  134 LEEGLENLKQIPDYTTTFIKQERIAGSMTEPNLINLKIRHEPFSVYMKWLNG 185          
BLAST of mRNA_M-pyrifera_M_contig97821.22526.1 vs. uniprot
Match: A0A836RHS8_9PLAN (DUF1571 domain-containing protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A836RHS8_9PLAN)

HSP 1 Score: 52.0 bits (123), Expect = 3.430e-6
Identity = 22/52 (42.31%), Postives = 35/52 (67.31%), Query Frame = 1
Query:   40 LDKAIQQLSTVHSYTARWVRQIRLYGSLRDEEHVDLKIRHQPFSVHMNWMDG 195
            L+K+   L  V  YTA + +Q R+ G L + + ++LK+RHQPFS++M W+ G
Sbjct:   15 LEKSQHVLENVSDYTATFYKQERINGELSEGQLMELKMRHQPFSIYMKWLTG 66          
BLAST of mRNA_M-pyrifera_M_contig97821.22526.1 vs. uniprot
Match: UPI0012F7A22C (DUF1571 domain-containing protein n=1 Tax=Schlesneria paludicola TaxID=360056 RepID=UPI0012F7A22C)

HSP 1 Score: 52.0 bits (123), Expect = 4.340e-6
Identity = 20/52 (38.46%), Postives = 36/52 (69.23%), Query Frame = 1
Query:   40 LDKAIQQLSTVHSYTARWVRQIRLYGSLRDEEHVDLKIRHQPFSVHMNWMDG 195
            L+K ++ L++   YTA +V+Q  + G L DE+ +++K+RH PFS+++ W  G
Sbjct:   94 LEKGVEFLTSTPDYTALFVKQELVNGDLLDEQEMEMKVRHAPFSIYLKWTTG 145          
BLAST of mRNA_M-pyrifera_M_contig97821.22526.1 vs. uniprot
Match: A0A5C5X554_9PLAN (Uncharacterized protein n=1 Tax=Thalassoglobus neptunius TaxID=1938619 RepID=A0A5C5X554_9PLAN)

HSP 1 Score: 51.6 bits (122), Expect = 5.980e-6
Identity = 22/52 (42.31%), Postives = 34/52 (65.38%), Query Frame = 1
Query:   40 LDKAIQQLSTVHSYTARWVRQIRLYGSLRDEEHVDLKIRHQPFSVHMNWMDG 195
            L K I+   +V  YTA + +Q R+ G L D + ++LK++H+PFSV+M W  G
Sbjct:  102 LKKGIESFESVPDYTASFYKQERMNGVLGDGQTIELKMKHEPFSVYMKWESG 153          
BLAST of mRNA_M-pyrifera_M_contig97821.22526.1 vs. uniprot
Match: A0A2E9VRG7_9PLAN (Uncharacterized protein n=2 Tax=Planctomycetaceae TaxID=126 RepID=A0A2E9VRG7_9PLAN)

HSP 1 Score: 50.8 bits (120), Expect = 1.080e-5
Identity = 20/48 (41.67%), Postives = 33/48 (68.75%), Query Frame = 1
Query:   61 LSTVHSYTARWVRQIRLYGSLRDEEHVDLKIRHQPFSVHMNWMDGSQQ 204
            + +V  YTA   +Q+R+ G L+D E +++K+RH+PFSV+M W    Q+
Sbjct:   85 IQSVDRYTATLEKQVRVDGELQDPEEIEVKVRHKPFSVYMQWKGDGQE 132          
BLAST of mRNA_M-pyrifera_M_contig97821.22526.1 vs. uniprot
Match: A0A3M1VB55_9BACT (DUF1571 domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3M1VB55_9BACT)

HSP 1 Score: 50.4 bits (119), Expect = 1.570e-5
Identity = 22/55 (40.00%), Postives = 37/55 (67.27%), Query Frame = 1
Query:   31 YRNLDKAIQQLSTVHSYTARWVRQIRLYGSLRDEEHVDLKIRHQPFSVHMNWMDG 195
            Y  L +A ++L  + +YTA +V+Q RL G+L D + + +++RH+PF+V M W  G
Sbjct:  154 YLMLAEAARRLERLDAYTATFVKQERLGGTLTDRQVIAMRVRHRPFAVWMEWKKG 208          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig97821.22526.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A356A3P8_9PLAN3.290e-734.78Uncharacterized protein n=2 Tax=Planctomycetaceae ... [more]
A0A3L7SG14_9BACT3.480e-746.15DUF1571 domain-containing protein n=1 Tax=Planctom... [more]
F0SIC0_RUBBR6.550e-742.31Uncharacterized protein n=2 Tax=Rubinisphaera TaxI... [more]
A0A1I3JZG3_9PLAN6.600e-746.15Uncharacterized protein n=1 Tax=Planctomicrobium p... [more]
A0A518CMX6_9PLAN6.770e-738.46Uncharacterized protein n=1 Tax=Polystyrenella lon... [more]
A0A836RHS8_9PLAN3.430e-642.31DUF1571 domain-containing protein n=1 Tax=Planctom... [more]
UPI0012F7A22C4.340e-638.46DUF1571 domain-containing protein n=1 Tax=Schlesne... [more]
A0A5C5X554_9PLAN5.980e-642.31Uncharacterized protein n=1 Tax=Thalassoglobus nep... [more]
A0A2E9VRG7_9PLAN1.080e-541.67Uncharacterized protein n=2 Tax=Planctomycetaceae ... [more]
A0A3M1VB55_9BACT1.570e-540.00DUF1571 domain-containing protein n=1 Tax=Planctom... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig97821contigM-pyrifera_M_contig97821:500..703 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size204
Cds size186
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816895.0155675-UTR-M-pyrifera_M_contig97821:499..5171622816895.0155675-UTR-M-pyrifera_M_contig97821:499..517Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig97821 500..517 +
1692278241.5787284-UTR-M-pyrifera_M_contig97821:499..5171692278241.5787284-UTR-M-pyrifera_M_contig97821:499..517Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig97821 500..517 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816895.0281045-CDS-M-pyrifera_M_contig97821:517..7031622816895.0281045-CDS-M-pyrifera_M_contig97821:517..703Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig97821 518..703 +
1692278241.5972807-CDS-M-pyrifera_M_contig97821:517..7031692278241.5972807-CDS-M-pyrifera_M_contig97821:517..703Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig97821 518..703 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig97821.22526.1prot_M-pyrifera_M_contig97821.22526.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig97821 518..703 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig97821.22526.1

>prot_M-pyrifera_M_contig97821.22526.1 ID=prot_M-pyrifera_M_contig97821.22526.1|Name=mRNA_M-pyrifera_M_contig97821.22526.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=62bp
MVDCYRNLDKAIQQLSTVHSYTARWVRQIRLYGSLRDEEHVDLKIRHQPF
SVHMNWMDGSQQ
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mRNA from alignment at M-pyrifera_M_contig97821:500..703+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig97821.22526.1 ID=mRNA_M-pyrifera_M_contig97821.22526.1|Name=mRNA_M-pyrifera_M_contig97821.22526.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=204bp|location=Sequence derived from alignment at M-pyrifera_M_contig97821:500..703+ (Macrocystis pyrifera P11B4 male)
CCGTCTTTGCATCCGGAGATGGTTGACTGCTACCGAAATCTCGACAAAGC CATCCAACAACTCTCAACGGTTCACAGCTACACGGCTCGTTGGGTCCGTC AGATTCGTTTGTATGGGTCTCTGCGTGACGAAGAACACGTCGATCTCAAG ATTCGCCATCAGCCATTCAGCGTGCACATGAACTGGATGGATGGCAGTCA ACAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig97821:500..703+

>mRNA_M-pyrifera_M_contig97821.22526.1 ID=mRNA_M-pyrifera_M_contig97821.22526.1|Name=mRNA_M-pyrifera_M_contig97821.22526.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=372bp|location=Sequence derived from alignment at M-pyrifera_M_contig97821:500..703+ (Macrocystis pyrifera P11B4 male)
ATGGTTGACTGCTACCGAAATCTCGACAAAGCCATCCAACAACTCTCAAC
GGTTCACAGCTACACGGCTCGTTGGGTCCGTCAGATTCGTTTGTATGGGT
CTCTGCGTGACGAAGAACACGTCGATCTCAAGATTCGCCATCAGCCATTC
AGCGTGCACATGAACTGGATGGATGGCAGTCAACAAATGGTTGACTGCTA
CCGAAATCTCGACAAAGCCATCCAACAACTCTCAACGGTTCACAGCTACA
CGGCTCGTTGGGTCCGTCAGATTCGTTTGTATGGGTCTCTGCGTGACGAA
GAACACGTCGATCTCAAGATTCGCCATCAGCCATTCAGCGTGCACATGAA
CTGGATGGATGGCAGTCAACAA
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