mRNA_M-pyrifera_M_contig97705.22501.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig97705.22501.1
Unique NamemRNA_M-pyrifera_M_contig97705.22501.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig97705.22501.1 vs. uniprot
Match: L8HBJ4_ACACA (Methyltransferase domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HBJ4_ACACA)

HSP 1 Score: 80.9 bits (198), Expect = 4.200e-16
Identity = 41/92 (44.57%), Postives = 57/92 (61.96%), Query Frame = 1
Query:    1 LWTPSPCLEEVIDTIEEHLVKSNDSLESVNDLAAVDLACGSGRDGVWLAIRGWTVLCVDYKQQQLDSVAALAARHGVSDRVFTALIDLETSD 276
            LW PSP L    D IE  L+ S  + +      A+D+ CGSGRD V+LA+RGW VL VDY   Q++ +   A +HGV+DRV  A +D+E ++
Sbjct:  144 LWIPSPLLNRETDRIES-LLASTSAAQGERVGRALDIGCGSGRDAVFLALRGWEVLGVDYLDHQIEKLHGFAQQHGVADRVKGACMDVEKNN 234          
BLAST of mRNA_M-pyrifera_M_contig97705.22501.1 vs. uniprot
Match: A0A661E016_9GAMM (TehB domain-containing protein (Fragment) n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A661E016_9GAMM)

HSP 1 Score: 67.8 bits (164), Expect = 8.110e-12
Identity = 41/90 (45.56%), Postives = 51/90 (56.67%), Query Frame = 1
Query:    1 LWTPSPCLEEVIDTIEEHLVKSNDSLESVNDLAAVDLACGSGRDGVWLAIRGWTVLCVDYKQQQLDSVAALAARHGVSDRVFTALIDLET 270
            LW  +P L EVI  +E+          SV   AA+DLACG+GRD V+LA RGW V  +D KQ  L+    LA    VS  + T L+DLET
Sbjct:   94 LWQANPLLSEVIAQVEQ----------SVAGRAAIDLACGAGRDSVYLAGRGWDVTAIDNKQDTLERCQRLAKSSQVS--LSTLLMDLET 171          
BLAST of mRNA_M-pyrifera_M_contig97705.22501.1 vs. uniprot
Match: A0A2P6N2N0_9EUKA (Methyltransferase type 11 n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6N2N0_9EUKA)

HSP 1 Score: 67.4 bits (163), Expect = 2.320e-11
Identity = 39/89 (43.82%), Postives = 55/89 (61.80%), Query Frame = 1
Query:    1 LWTPSPCLEEVIDTIEEHLVKSNDSLESVNDLAAVDLACGSGRDGVWLAIRGWTVLCVDYKQQQLDSVAALAARHGVSDRVFTALIDLE 267
            LWTP+P L + I TIEE L +     +      A+D+ACG GR+ V+LA RGW+V  VD++Q  LD    LA++H +S  + T L D+E
Sbjct:   89 LWTPAPYLSKHIKTIEEKLQEIYPGKQH----EALDVACGCGREAVYLAERGWSVTGVDFQQILLDKANQLASQHKLS--IKTILSDIE 171          
BLAST of mRNA_M-pyrifera_M_contig97705.22501.1 vs. uniprot
Match: A0A5C7Y8Q5_9MYCO (Class I SAM-dependent methyltransferase n=1 Tax=Mycolicibacter arupensis TaxID=342002 RepID=A0A5C7Y8Q5_9MYCO)

HSP 1 Score: 63.5 bits (153), Expect = 2.880e-10
Identity = 29/58 (50.00%), Postives = 40/58 (68.97%), Query Frame = 1
Query:  100 AVDLACGSGRDGVWLAIRGWTVLCVDYKQQQLDSVAALAARHGVSDRVFTALIDLETS 273
            A+D+ACG GR+ +WLA RGW V+ +D+    L   A LA R GV+DR+  ALID+ T+
Sbjct:   37 ALDVACGEGRNAIWLAQRGWQVVGIDFSPVGLQQAAQLANRAGVADRIDFALIDVVTA 94          
BLAST of mRNA_M-pyrifera_M_contig97705.22501.1 vs. uniprot
Match: UPI00167CB575 (class I SAM-dependent methyltransferase n=1 Tax=Streptomyces malachitofuscus TaxID=67322 RepID=UPI00167CB575)

HSP 1 Score: 63.2 bits (152), Expect = 4.320e-10
Identity = 33/68 (48.53%), Postives = 41/68 (60.29%), Query Frame = 1
Query:   79 ESVNDLA---AVDLACGSGRDGVWLAIRGWTVLCVDYKQQQLDSVAALAARHGVSDRVFTALIDLETS 273
            ESV DL    A+DL CGSG D +WLA RGW V  VD     ++ +AALAA HG+ +R+     DL  S
Sbjct:   31 ESVTDLPPGDALDLGCGSGGDALWLARRGWRVTAVDVSSVAVERLAALAAAHGLGERIGARRHDLRES 98          
BLAST of mRNA_M-pyrifera_M_contig97705.22501.1 vs. uniprot
Match: UPI001C585050 (methyltransferase domain-containing protein n=1 Tax=unclassified Mycobacterium TaxID=2642494 RepID=UPI001C585050)

HSP 1 Score: 62.4 bits (150), Expect = 8.560e-10
Identity = 27/55 (49.09%), Postives = 39/55 (70.91%), Query Frame = 1
Query:  100 AVDLACGSGRDGVWLAIRGWTVLCVDYKQQQLDSVAALAARHGVSDRVFTALIDL 264
            A+D+ACG GR+ +WLA RGW  + VD+ +Q L+  A LA R GV+DRV   ++D+
Sbjct:   37 ALDVACGEGRNAIWLASRGWQAVGVDFSKQGLERAAQLARRAGVADRVDFQVVDV 91          
BLAST of mRNA_M-pyrifera_M_contig97705.22501.1 vs. uniprot
Match: A0A5S9QTB7_9GAMM (Putative S-adenosyl-L-methionine-dependent methyltransferase TehB n=2 Tax=BD1-7 clade bacterium TaxID=2029982 RepID=A0A5S9QTB7_9GAMM)

HSP 1 Score: 62.4 bits (150), Expect = 1.660e-9
Identity = 37/92 (40.22%), Postives = 55/92 (59.78%), Query Frame = 1
Query:    1 LWTPSPCLEEVIDTIEEHLVKSNDSLESVNDLAAVDLACGSGRDGVWLAIRGWTVLCVDYKQQQLDSVAALAARHGVSDRVFTALIDLETSD 276
            LW P+P    VI T  E  + +  +LES ++L  +DLACG GR+ V+LA+ GW +  +DY+Q  LD    LA +H V+  + T  +D+E  D
Sbjct:   96 LWEPAP----VIRTFVERFMPT--TLESTSNLG-LDLACGCGREAVFLAMHGWQMTGIDYQQTALDKAQRLAKQHTVN--LNTLSLDVEADD 178          
BLAST of mRNA_M-pyrifera_M_contig97705.22501.1 vs. uniprot
Match: A0A4Q3UI99_9BACT (Class I SAM-dependent methyltransferase n=1 Tax=bacterium TaxID=1869227 RepID=A0A4Q3UI99_9BACT)

HSP 1 Score: 62.0 bits (149), Expect = 1.970e-9
Identity = 33/78 (42.31%), Postives = 39/78 (50.00%), Query Frame = 1
Query:    1 LWTPSPCLEEVIDTIEEHLVKSNDSLESVNDLAAVDLACGSGRDGVWLAIRGWTVLCVDYKQQQLDSVAALAARHGVS 234
            LW PSP L+  +           D       L A+DLACG+GRD VWLA+ GW V  VD     LD   ALA  H V+
Sbjct:   66 LWEPSPGLKAFLQVSPPPQPPLRDEPLEEGALRALDLACGTGRDAVWLAMHGWRVTAVDILPDALDRAQALAELHDVT 143          
BLAST of mRNA_M-pyrifera_M_contig97705.22501.1 vs. uniprot
Match: A0A7X4J2G7_9BACT (Class I SAM-dependent methyltransferase n=3 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A7X4J2G7_9BACT)

HSP 1 Score: 61.2 bits (147), Expect = 2.820e-9
Identity = 31/66 (46.97%), Postives = 41/66 (62.12%), Query Frame = 1
Query:   73 SLESVNDLAAVDLACGSGRDGVWLAIRGWTVLCVDYKQQQLDSVAALAARHGVSDRVFTALIDLET 270
            +++ VN   A+DLACG+GR+ +WLA RGW V  VD  +  LD + A A R G  DRV     DLE+
Sbjct:   52 AVDGVNPGRALDLACGTGRNAIWLARRGWRVDAVDGAETALDLLLAGAERAGCEDRVTAHAADLES 117          
BLAST of mRNA_M-pyrifera_M_contig97705.22501.1 vs. uniprot
Match: A0A2S6WHQ4_9ACTN (SAM-dependent methyltransferase n=1 Tax=Streptomyces sp. 46 TaxID=1777322 RepID=A0A2S6WHQ4_9ACTN)

HSP 1 Score: 61.2 bits (147), Expect = 2.980e-9
Identity = 32/70 (45.71%), Postives = 40/70 (57.14%), Query Frame = 1
Query:   79 ESVNDLA-----AVDLACGSGRDGVWLAIRGWTVLCVDYKQQQLDSVAALAARHGVSDRVFTALIDLETS 273
            E+V DL+     A+DL CG G DG+WLA RGW V  VD     ++ + ALA  HG+ DRV     DL  S
Sbjct:   51 EAVTDLSLAPGDALDLGCGEGGDGLWLAGRGWHVTAVDISAVAVERLTALARSHGLGDRVVAVRHDLHIS 120          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig97705.22501.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
L8HBJ4_ACACA4.200e-1644.57Methyltransferase domain containing protein n=1 Ta... [more]
A0A661E016_9GAMM8.110e-1245.56TehB domain-containing protein (Fragment) n=1 Tax=... [more]
A0A2P6N2N0_9EUKA2.320e-1143.82Methyltransferase type 11 n=1 Tax=Planoprotosteliu... [more]
A0A5C7Y8Q5_9MYCO2.880e-1050.00Class I SAM-dependent methyltransferase n=1 Tax=My... [more]
UPI00167CB5754.320e-1048.53class I SAM-dependent methyltransferase n=1 Tax=St... [more]
UPI001C5850508.560e-1049.09methyltransferase domain-containing protein n=1 Ta... [more]
A0A5S9QTB7_9GAMM1.660e-940.22Putative S-adenosyl-L-methionine-dependent methylt... [more]
A0A4Q3UI99_9BACT1.970e-942.31Class I SAM-dependent methyltransferase n=1 Tax=ba... [more]
A0A7X4J2G7_9BACT2.820e-946.97Class I SAM-dependent methyltransferase n=3 Tax=Ac... [more]
A0A2S6WHQ4_9ACTN2.980e-945.71SAM-dependent methyltransferase n=1 Tax=Streptomyc... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig97705contigM-pyrifera_M_contig97705:96..423 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.5
Seed ortholog evalue1.5e-08
Seed eggNOG ortholog296587.XP_002506871.1
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0008150,GO:0008152,GO:0008168,GO:0016740,GO:0016741,GO:0032259
EggNOG OGs2CZ1V@1,2S7WX@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size276
Cds size276
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816894.0307055-CDS-M-pyrifera_M_contig97705:95..3081622816894.0307055-CDS-M-pyrifera_M_contig97705:95..308Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig97705 96..308 -
1692278241.0482605-CDS-M-pyrifera_M_contig97705:95..3081692278241.0482605-CDS-M-pyrifera_M_contig97705:95..308Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig97705 96..308 -
1622816894.0422087-CDS-M-pyrifera_M_contig97705:360..4231622816894.0422087-CDS-M-pyrifera_M_contig97705:360..423Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig97705 361..423 -
1692278241.0697126-CDS-M-pyrifera_M_contig97705:360..4231692278241.0697126-CDS-M-pyrifera_M_contig97705:360..423Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig97705 361..423 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig97705.22501.1prot_M-pyrifera_M_contig97705.22501.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig97705 96..423 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig97705.22501.1

>prot_M-pyrifera_M_contig97705.22501.1 ID=prot_M-pyrifera_M_contig97705.22501.1|Name=mRNA_M-pyrifera_M_contig97705.22501.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=92bp
LWTPSPCLEEVIDTIEEHLVKSNDSLESVNDLAAVDLACGSGRDGVWLAI
RGWTVLCVDYKQQQLDSVAALAARHGVSDRVFTALIDLETSD
back to top

mRNA from alignment at M-pyrifera_M_contig97705:96..423-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig97705.22501.1 ID=mRNA_M-pyrifera_M_contig97705.22501.1|Name=mRNA_M-pyrifera_M_contig97705.22501.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=328bp|location=Sequence derived from alignment at M-pyrifera_M_contig97705:96..423- (Macrocystis pyrifera P11B4 male)
CTTTGGACACCCTCTCCCTGCCTCGAAGAAGTCATCGATACTATCGAAGA GCACCTAGTCAAGGTATTCTTCTCTGCATTATGCTCCTTTCACAACTTAC TGACACATCCTGTAGAGTAACGACAGTTTGGAAAGTGTGAACGATCTTGC AGCAGTAGATCTTGCGTGTGGGAGTGGCCGAGATGGAGTTTGGCTTGCCA TTCGTGGATGGACGGTGCTTTGTGTGGACTACAAGCAGCAGCAGCTGGAC AGTGTGGCTGCCCTTGCTGCACGCCATGGGGTGTCTGACAGGGTATTCAC CGCTCTCATTGACCTCGAAACGAGCGAT
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig97705:96..423-

>mRNA_M-pyrifera_M_contig97705.22501.1 ID=mRNA_M-pyrifera_M_contig97705.22501.1|Name=mRNA_M-pyrifera_M_contig97705.22501.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=552bp|location=Sequence derived from alignment at M-pyrifera_M_contig97705:96..423- (Macrocystis pyrifera P11B4 male)
CTTTGGACACCCTCTCCCTGCCTCGAAGAAGTCATCGATACTATCGAAGA
GCACCTAGTCAAGCTTTGGACACCCTCTCCCTGCCTCGAAGAAGTCATCG
ATACTATCGAAGAGCACCTAGTCAAGAGTAACGACAGTTTGGAAAGTGTG
AACGATCTTGCAGCAGTAGATCTTGCGTGTGGGAGTGGCCGAGATGGAGT
TTGGCTTGCCATTCGTGGATGGACGGTGCTTTGTGTGGACTACAAGCAGC
AGCAGCTGGACAGTGTGGCTGCCCTTGCTGCACGCCATGGGGTGTCTGAC
AGGGTATTCACCGCTCTCATTGACCTCGAAACGAGCGATAGTAACGACAG
TTTGGAAAGTGTGAACGATCTTGCAGCAGTAGATCTTGCGTGTGGGAGTG
GCCGAGATGGAGTTTGGCTTGCCATTCGTGGATGGACGGTGCTTTGTGTG
GACTACAAGCAGCAGCAGCTGGACAGTGTGGCTGCCCTTGCTGCACGCCA
TGGGGTGTCTGACAGGGTATTCACCGCTCTCATTGACCTCGAAACGAGCG
AT
back to top