mRNA_M-pyrifera_M_contig97693.22497.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig97693.22497.1
Unique NamemRNA_M-pyrifera_M_contig97693.22497.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig97693.22497.1 vs. uniprot
Match: D2VZJ6_NAEGR (Predicted protein n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2VZJ6_NAEGR)

HSP 1 Score: 83.2 bits (204), Expect = 1.970e-17
Identity = 37/83 (44.58%), Postives = 54/83 (65.06%), Query Frame = 1
Query:    1 FSYLEEEVEEELLCSICMDAFTSPVEHSACGNVFCAECVEGATITACPLCRGDCRGGF---VPVKNRVLLNMLAKVKVRCDDC 240
            F Y+E+E++E+L+CSIC+  F  P+ H++CGN FCA+C+E  T+  CPLC     GGF        + + NML K+KV+C  C
Sbjct:   34 FDYVEKEIDEDLICSICLHPFVDPISHNSCGNTFCAKCIENVTV--CPLCN---EGGFKKNCAASAKTIRNMLDKLKVKCGMC 111          
BLAST of mRNA_M-pyrifera_M_contig97693.22497.1 vs. uniprot
Match: A0A7G2CKC1_9TRYP (Zinc finger, C3HC4 type (RING finger)/RING-type zinc-finger/zinc-RING finger domain/EF hand/EF-hand domain pair, putative n=1 Tax=Angomonas deanei TaxID=59799 RepID=A0A7G2CKC1_9TRYP)

HSP 1 Score: 68.2 bits (165), Expect = 1.260e-11
Identity = 30/76 (39.47%), Postives = 45/76 (59.21%), Query Frame = 1
Query:   16 EEVEEELLCSICMDAFTSPVEHSACGNVFCAECVEGATITACPLCRGDCRGGFVPVKNRVLLNMLAKVKVRCDDCG 243
            E V +EL+C +C+D+F  PVE   CG+++C +C+ G  +  CP CR        P  NR ++NM   V+V+C  CG
Sbjct:    7 ENVNDELVCGVCLDSFNDPVEIRRCGHIYCRKCLTG--MKDCPTCREPIESTVAP--NRAIVNMALNVQVKCMKCG 78          
BLAST of mRNA_M-pyrifera_M_contig97693.22497.1 vs. uniprot
Match: D2W263_NAEGR (Predicted protein n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2W263_NAEGR)

HSP 1 Score: 67.8 bits (164), Expect = 2.130e-11
Identity = 34/83 (40.96%), Postives = 52/83 (62.65%), Query Frame = 1
Query:    1 FSYLEEEVEEELLCSICMDAFTSPVEHS--ACGNVFCAECVEGATITACPLCRG-DCRGGFVPVKNRVLLNMLAKVKVRCDDC 240
            F Y+E+E++E+L+CSIC+  F  P+ H+  ACGN FC +CVE   ++ CP+CR  D +      K   +  +L K+KV+C  C
Sbjct:   31 FDYVEKEIDEDLICSICLLPFVDPISHNSDACGNTFCLKCVE--KVSDCPMCREVDFKKNCSSAKT--IAKLLDKLKVKCGMC 109          
BLAST of mRNA_M-pyrifera_M_contig97693.22497.1 vs. uniprot
Match: D2VR88_NAEGR (Predicted protein n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2VR88_NAEGR)

HSP 1 Score: 65.9 bits (159), Expect = 9.880e-11
Identity = 30/81 (37.04%), Postives = 46/81 (56.79%), Query Frame = 1
Query:    1 FSYLEEE-VEEELLCSICMDAFTSPVEHSACGNVFCAECVEGATITACPLCRGDCRGGFVPVKNRVLLNMLAKVKVRCDDC 240
            + YL+E  +E++L+CS+C   F  P+ HS C N+FC+ CV+      CPLC+G+          R + N L ++KV C  C
Sbjct:   52 YIYLDENNIEKDLICSLCYHPFIDPIMHSTCENMFCSSCVKKVIGNKCPLCKGENFTSNCSSVPRFVTNKLLQLKVECSMC 132          
BLAST of mRNA_M-pyrifera_M_contig97693.22497.1 vs. uniprot
Match: A0A0L0DPL0_THETB (Rac2 protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DPL0_THETB)

HSP 1 Score: 62.4 bits (150), Expect = 1.680e-9
Identity = 28/81 (34.57%), Postives = 46/81 (56.79%), Query Frame = 1
Query:    7 YLEEEVEEELLCSICMDAFTSPVEHSACGNVFCAECVEGATI--TACPLCRGDCRGGFVPVKNRVLLNMLAKVKVRCDDCG 243
            Y++E++++ELLCSIC   F  PV    C ++FCA C++        CP CRG      V   +R++ N++ K++  C + G
Sbjct:  355 YVDEDIDDELLCSICTLPFLEPVAVPGCEHIFCATCLKDWLFQHANCPACRGTVAASAVAPASRIIRNLVDKLEAHCPEDG 435          
BLAST of mRNA_M-pyrifera_M_contig97693.22497.1 vs. uniprot
Match: A0A816BM77_9BILA (Hypothetical protein n=4 Tax=Rotaria magnacalcarata TaxID=392030 RepID=A0A816BM77_9BILA)

HSP 1 Score: 57.8 bits (138), Expect = 6.800e-8
Identity = 30/85 (35.29%), Postives = 46/85 (54.12%), Query Frame = 1
Query:    1 FSYLEE-EVEEELLCSICMDAFTSPVEHSACGNVFCAECVEG--ATITACPLCRGDC-RGGFVPVKNRVLLNMLAKVKVRCDDCG 243
            + YL E  ++E LLC +C   F  P+  S C +  C +C++      + CP+CR         PV  R+LL ML ++KV+C +CG
Sbjct:    7 YEYLNETSIDELLLCPLCKSPFVDPMS-SPCQHTVCCQCIKKWLKKSSTCPICRKSLVENDLKPVTERILLQMLHRLKVKCTECG 90          
BLAST of mRNA_M-pyrifera_M_contig97693.22497.1 vs. uniprot
Match: A0A814Q4S7_9BILA (Hypothetical protein n=3 Tax=Rotaria TaxID=231623 RepID=A0A814Q4S7_9BILA)

HSP 1 Score: 56.6 bits (135), Expect = 7.450e-8
Identity = 29/85 (34.12%), Postives = 46/85 (54.12%), Query Frame = 1
Query:    1 FSYLEE-EVEEELLCSICMDAFTSPVEHSACGNVFCAECVEG--ATITACPLCRGDC-RGGFVPVKNRVLLNMLAKVKVRCDDCG 243
            + YL E  ++E L+C IC      P+  S C +  C +C++      ++CP+CR         PV  R+LL ML ++KV+C +CG
Sbjct:    7 YEYLNETSIDELLICHICRSPLVDPIS-SPCQHTACCQCIKRWLKNTSSCPVCRKSLVENDLKPVTERILLQMLNRLKVKCTECG 90          
BLAST of mRNA_M-pyrifera_M_contig97693.22497.1 vs. uniprot
Match: A0A820GRX8_9BILA (Hypothetical protein n=5 Tax=Rotaria socialis TaxID=392032 RepID=A0A820GRX8_9BILA)

HSP 1 Score: 56.6 bits (135), Expect = 1.740e-7
Identity = 29/85 (34.12%), Postives = 46/85 (54.12%), Query Frame = 1
Query:    1 FSYLEE-EVEEELLCSICMDAFTSPVEHSACGNVFCAECVEG--ATITACPLCRGDC-RGGFVPVKNRVLLNMLAKVKVRCDDCG 243
            + YL E  ++E L+C IC      P+  S C +  C +C++      ++CP+CR         PV  R+LL ML ++KV+C +CG
Sbjct:    7 YEYLNETSIDELLICHICRSPLVDPIS-SPCQHTACCQCIKRWLKNTSSCPVCRKSLVENDLKPVTERILLQMLNRLKVKCTECG 90          
BLAST of mRNA_M-pyrifera_M_contig97693.22497.1 vs. uniprot
Match: A0A817KJ66_9BILA (Hypothetical protein n=3 Tax=Rotaria sp. Silwood2 TaxID=2762512 RepID=A0A817KJ66_9BILA)

HSP 1 Score: 56.2 bits (134), Expect = 2.000e-7
Identity = 29/84 (34.52%), Postives = 44/84 (52.38%), Query Frame = 1
Query:    1 FSYLEEE-VEEELLCSICMDAFTSPVEHSACGNVFCAECVEG--ATITACPLCRGDCR-GGFVPVKNRVLLNMLAKVKVRCDDC 240
            F Y+ E+ ++EEL C+IC   F  P   S CG+ FC +C+         CP CR        +P+  R++LN L ++ V+C  C
Sbjct:   21 FEYINEDNIDEELKCTICAQPFQMPTTSSKCGHTFCHQCIIEWLNKQNTCPTCRNRMSLQELLPIATRIILNQLDRLLVQCTLC 104          
BLAST of mRNA_M-pyrifera_M_contig97693.22497.1 vs. uniprot
Match: A0A815JAF9_9BILA (Hypothetical protein n=6 Tax=Rotaria sordida TaxID=392033 RepID=A0A815JAF9_9BILA)

HSP 1 Score: 55.8 bits (133), Expect = 2.630e-7
Identity = 32/95 (33.68%), Postives = 48/95 (50.53%), Query Frame = 1
Query:    1 FSYLEE-EVEEELLCSICMDAFTSPVEHSACGNVFCAECVE--GATITACPLCRGDCR------------GGFVPVKNRVLLNMLAKVKVRCDDC 240
            + Y+ E E+++EL C+IC   F  PV  S C + FC EC++        CP+CR   R              +VP+  R++LN L ++ VRC  C
Sbjct:    9 YEYINENEIDDELKCTICKQPFEYPVSLSLCHHTFCKECIKIWFYQNQTCPICRQIIRHCYERINQSFEYSLYVPINTRIVLNQLDRLLVRCLLC 103          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig97693.22497.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D2VZJ6_NAEGR1.970e-1744.58Predicted protein n=1 Tax=Naegleria gruberi TaxID=... [more]
A0A7G2CKC1_9TRYP1.260e-1139.47Zinc finger, C3HC4 type (RING finger)/RING-type zi... [more]
D2W263_NAEGR2.130e-1140.96Predicted protein n=1 Tax=Naegleria gruberi TaxID=... [more]
D2VR88_NAEGR9.880e-1137.04Predicted protein n=1 Tax=Naegleria gruberi TaxID=... [more]
A0A0L0DPL0_THETB1.680e-934.57Rac2 protein n=1 Tax=Thecamonas trahens ATCC 50062... [more]
A0A816BM77_9BILA6.800e-835.29Hypothetical protein n=4 Tax=Rotaria magnacalcarat... [more]
A0A814Q4S7_9BILA7.450e-834.12Hypothetical protein n=3 Tax=Rotaria TaxID=231623 ... [more]
A0A820GRX8_9BILA1.740e-734.12Hypothetical protein n=5 Tax=Rotaria socialis TaxI... [more]
A0A817KJ66_9BILA2.000e-734.52Hypothetical protein n=3 Tax=Rotaria sp. Silwood2 ... [more]
A0A815JAF9_9BILA2.630e-733.68Hypothetical protein n=6 Tax=Rotaria sordida TaxID... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig97693contigM-pyrifera_M_contig97693:463..705 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score84.7
Seed ortholog evalue2.1e-14
Seed eggNOG ortholog5762.XP_002670602.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Ring finger
EggNOG OGs2CZG7@1,2SA98@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size243
Cds size243
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816893.8512917-CDS-M-pyrifera_M_contig97693:462..7051622816893.8512917-CDS-M-pyrifera_M_contig97693:462..705Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig97693 463..705 +
1692278240.9600928-CDS-M-pyrifera_M_contig97693:462..7051692278240.9600928-CDS-M-pyrifera_M_contig97693:462..705Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig97693 463..705 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig97693.22497.1prot_M-pyrifera_M_contig97693.22497.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig97693 463..705 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig97693.22497.1

>prot_M-pyrifera_M_contig97693.22497.1 ID=prot_M-pyrifera_M_contig97693.22497.1|Name=mRNA_M-pyrifera_M_contig97693.22497.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=81bp
FSYLEEEVEEELLCSICMDAFTSPVEHSACGNVFCAECVEGATITACPLC
RGDCRGGFVPVKNRVLLNMLAKVKVRCDDCG
back to top

mRNA from alignment at M-pyrifera_M_contig97693:463..705+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig97693.22497.1 ID=mRNA_M-pyrifera_M_contig97693.22497.1|Name=mRNA_M-pyrifera_M_contig97693.22497.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=243bp|location=Sequence derived from alignment at M-pyrifera_M_contig97693:463..705+ (Macrocystis pyrifera P11B4 male)
TTCAGCTATCTCGAGGAGGAGGTGGAGGAGGAGCTGCTCTGCTCCATCTG CATGGACGCATTCACTTCGCCAGTGGAGCACAGCGCCTGTGGCAATGTCT TCTGTGCGGAATGTGTGGAGGGGGCGACGATCACTGCGTGTCCCTTGTGC AGGGGCGACTGCAGGGGAGGATTCGTGCCTGTGAAGAACAGAGTCCTCCT CAACATGCTCGCCAAGGTGAAGGTCCGCTGTGACGACTGTGGC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig97693:463..705+

>mRNA_M-pyrifera_M_contig97693.22497.1 ID=mRNA_M-pyrifera_M_contig97693.22497.1|Name=mRNA_M-pyrifera_M_contig97693.22497.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=486bp|location=Sequence derived from alignment at M-pyrifera_M_contig97693:463..705+ (Macrocystis pyrifera P11B4 male)
TTCAGCTATCTCGAGGAGGAGGTGGAGGAGGAGCTGCTCTGCTCCATCTG
CATGGACGCATTCACTTCGCCAGTGGAGCACAGCGCCTGTGGCAATGTCT
TCTGTGCGGAATGTGTGGAGGGGGCGACGATCACTGCGTGTCCCTTGTGC
AGGGGCGACTGCAGGGGAGGATTCGTGCCTGTGAAGAACAGAGTCCTCCT
CAACATGCTCGCCAAGGTGAAGGTCCGCTGTGACGACTGTGGCTTCAGCT
ATCTCGAGGAGGAGGTGGAGGAGGAGCTGCTCTGCTCCATCTGCATGGAC
GCATTCACTTCGCCAGTGGAGCACAGCGCCTGTGGCAATGTCTTCTGTGC
GGAATGTGTGGAGGGGGCGACGATCACTGCGTGTCCCTTGTGCAGGGGCG
ACTGCAGGGGAGGATTCGTGCCTGTGAAGAACAGAGTCCTCCTCAACATG
CTCGCCAAGGTGAAGGTCCGCTGTGACGACTGTGGC
back to top