mRNA_M-pyrifera_M_contig97685.22492.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig97685.22492.1
Unique NamemRNA_M-pyrifera_M_contig97685.22492.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig97685.22492.1 vs. uniprot
Match: A0A832DLJ7_9BACT (NAD(P)-dependent oxidoreductase n=1 Tax=Candidatus Rokubacteria bacterium TaxID=2053607 RepID=A0A832DLJ7_9BACT)

HSP 1 Score: 226 bits (576), Expect = 1.190e-70
Identity = 130/234 (55.56%), Postives = 159/234 (67.95%), Query Frame = 1
Query:    1 RSAASRQRADAAGLTDAGSLADLIAAADTVVSVCPPDATLVVAETV--RDLGGVARYVDANAIAPDTARQIDAMVTEAGGVFVDGGIIGPPANQAGTTRLYLSGDDAPLVADAFGGSLVEAIATEGGPGGASALKLCYAGWTKGSSALLLTMRSAAESAGVADALMAEWDRSQPGLVERSTRTAAGAAPKAWRWVGEMDEIAAFLEALELPGGSFTAAAELYTRLEGCKDKFDP 696
            RS +S +RA AAGL DAG+LA ++ A+D + SVCPP A L +A  V     GG+  YVDANA++P T R++ A+V +AG  FVDGGI+GPP    GTTRLYLSG+ AP +A       +EAI   GGPG ASA+K+ YA W KGS ALLL +R+ A + GV  AL+AEW+RSQPGLV RS   A G APKAWRW+ EM+EIAA   A  LP G   AAAE+  RLEG KD   P
Sbjct:   35 RSVSSARRAAAAGLEDAGTLAAVVRASDVIFSVCPPHAALDLARAVAAERFGGL--YVDANAVSPATTREVGAVVAKAGATFVDGGIVGPPPRTRGTTRLYLSGEAAPRIAALCEAGALEAIVLAGGPGAASAMKVAYAAWNKGSQALLLAVRAQAAADGVEAALLAEWERSQPGLVARSESAAKGTAPKAWRWIAEMEEIAATFAAAGLPDGFHRAAAEICRRLEGYKDAKTP 266          
BLAST of mRNA_M-pyrifera_M_contig97685.22492.1 vs. uniprot
Match: UPI001BC0B1A4 (DUF1932 domain-containing protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=UPI001BC0B1A4)

HSP 1 Score: 225 bits (574), Expect = 1.810e-70
Identity = 128/231 (55.41%), Postives = 155/231 (67.10%), Query Frame = 1
Query:    1 RSAASRQRADAAGLTDAGSLADLIAAADTVVSVCPPDATLVVAETVRDLGGVARYVDANAIAPDTARQIDAMVTEAGGVFVDGGIIGPPANQAGTTRLYLSGDDAPLVADAFGGSLVEAIATEGGPGGASALKLCYAGWTKGSSALLLTMRSAAESAGVADALMAEWDRSQPGLVERSTRTAAGAAPKAWRWVGEMDEIAAFLEALELPGGSFTAAAELYTRLEGCKDKFD 693
            RS  +R+RA  AG+ D G LADL+ A+D ++S+CPP A   VAE V   G    YVDANA++PDTAR IDA V   G  +VDGGI+G P  Q GTTRLYL+GDDA  +A  F    +EA+A +GG   ASALK+ YAGWTKGS+ALLL++R+ A + GV   L+AEW RS P L  RS R A     K WRWVGEMDEIAA L+A  LPGG   AAAE+Y RL   +D  D
Sbjct:   23 RSDDTRRRASGAGIEDVGDLADLVTASDVMLSICPPHAAAEVAEEVAAHGFRGCYVDANAVSPDTARSIDATVARGGAAYVDGGIVGGPPRQPGTTRLYLAGDDAIGIAALFADGPLEAVALDGGVPAASALKMAYAGWTKGSAALLLSIRALAAAEGVEADLLAEWTRSLPDLAGRSDRAATSGGRKGWRWVGEMDEIAASLDAAGLPGGFHEAAAEVYRRLSPLRDATD 253          
BLAST of mRNA_M-pyrifera_M_contig97685.22492.1 vs. uniprot
Match: A0A7V3XKS1_9BACT (NAD(P)-dependent oxidoreductase n=1 Tax=Candidatus Rokubacteria bacterium TaxID=2053607 RepID=A0A7V3XKS1_9BACT)

HSP 1 Score: 220 bits (560), Expect = 3.130e-68
Identity = 123/228 (53.95%), Postives = 154/228 (67.54%), Query Frame = 1
Query:    1 RSAASRQRADAAGLTDAGSLADLIAAADTVVSVCPPDATLVVAETVRDLGGVARYVDANAIAPDTARQIDAMVTEAGGVFVDGGIIGPPANQAGTTRLYLSGDDAPLVADAFGGSLVEAIATEGGPGGASALKLCYAGWTKGSSALLLTMRSAAESAGVADALMAEWDRSQPGLVERSTRTAAGAAPKAWRWVGEMDEIAAFLEALELPGGSFTAAAELYTRLEGCKD 684
            RS ASR RA  AGL DAG+LAD++ A+D ++SVCPP   L VA  V        +VDANA++P+T R+I  +V + G  FVDGGI+GPP    GTTRLYLSG  A  VA  F G+ +E +  EGGPG ASA+K  YA W KG  AL++ +R+ A + GV   L+AEW+RSQPGLV RS   AAG+A KAWRW+GEM+EIAA   A  LP G   AAAE+Y R+E  +D
Sbjct:   35 RSGASRARAAGAGLEDAGALADVVRASDVILSVCPPHGALDVARAVAAERFTGLFVDANAVSPETTREIGRIVEKGGARFVDGGIVGPPPETPGTTRLYLSGAAAAEVARLFAGTALEPVVVEGGPGAASAVKAAYAAWNKGWMALVMAVRALARAEGVEPTLLAEWERSQPGLVARSQAAAAGSARKAWRWIGEMEEIAAAFAADGLPDGFHLAAAEIYRRMERYRD 262          
BLAST of mRNA_M-pyrifera_M_contig97685.22492.1 vs. uniprot
Match: A0A1F4CL81_9PROT (DUF1932 domain-containing protein n=2 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A1F4CL81_9PROT)

HSP 1 Score: 219 bits (559), Expect = 5.020e-68
Identity = 129/228 (56.58%), Postives = 157/228 (68.86%), Query Frame = 1
Query:    1 RSAASRQRADAAGLTDAGSLADLIAAADTVVSVCPPDATLVVAETVRDLGGVARYVDANAIAPDTARQIDAMVTEAGGVFVDGGIIGPPANQAGTTRLYLSGDDAPLVADAFGGSLVEAIATEGGPGGASALKLCYAGWTKGSSALLLTMRSAAESAGVADALMAEWDRSQPGLVERSTRTAAGAAPKAWRWVGEMDEIAAFLEALELPGGSFTAAAELYTRLEGCKD 684
            RSA +R RA AAGL DA +LA L+AA++ ++SVCPP   L VA  V        YVDANA+AP TAR+I A+V +AG  FVDGGI+GPP +  G  RLYL G +A  VAD F    +EAIA  GGPG ASALK+ YA +TKGS+ALL+ +R+ A   GV +AL+ EWDRSQPGL  RS +    +A KAWR+VGEM+EIAA  E   LPGG   AAAE+Y RLE  KD
Sbjct:   36 RSAGTRGRAGAAGLEDADTLAALVAASEVILSVCPPHLALDVASAVAAHRFAGVYVDANAVAPATARRICAIVEQAGAAFVDGGIVGPPPHAPGAARLYLCGREAGRVADLFQSGNLEAIALNGGPGAASALKMAYAAYTKGSTALLMAIRALAAREGVDEALLGEWDRSQPGLSARSEQGMRNSARKAWRFVGEMEEIAASFEDAGLPGGFHLAAAEIYRRLESYKD 263          
BLAST of mRNA_M-pyrifera_M_contig97685.22492.1 vs. uniprot
Match: A0A6B0W5L7_9BACT (DUF1932 domain-containing protein n=6 Tax=Holophagales bacterium TaxID=2478486 RepID=A0A6B0W5L7_9BACT)

HSP 1 Score: 218 bits (555), Expect = 1.780e-67
Identity = 127/218 (58.26%), Postives = 151/218 (69.27%), Query Frame = 1
Query:   22 RADAAGLTDAGSLADLIAAADTVVSVCPPDATLVVAETVRDLGGVARYVDANAIAPDTARQIDAMVTEAGGVFVDGGIIGPPANQAGTTRLYLSGDDAPLVADAFGGSLVEAIATEGGPGGASALKLCYAGWTKGSSALLLTMRSAAESAGVADALMAEWDRSQPGLVERSTRTAAGAAPKAWRWVGEMDEIAAFLEALELPGGSFTAAAELYTRLEG 675
            RA  AG  D G+L  + AAAD V+SVCPP   L +AETV   G    YVDANA++P TA +I       G  FVDGGI+GPPA + GTTRLYLSGD A  VA  F  S +EAI  +   G ASALK+CYAG+TKGS+ALLL++R+AA + GV D L+ EW RSQPGL +RS R AA AAPKAWR+ GEM+EIA+ LEA+ LP G   AAAE Y RL G
Sbjct:   40 RAAGAGFEDLGTLEAVTAAADAVLSVCPPHGALALAETVAATGFDGLYVDANAVSPATALEIAGAAAAGGARFVDGGIVGPPAVRRGTTRLYLSGDAAAEVAPLFEDSALEAIDLDAKAGAASALKMCYAGFTKGSAALLLSLRAAASAYGVEDGLLGEWARSQPGLEKRSVRAAATAAPKAWRFAGEMEEIASTLEAVGLPDGFHRAAAEAYVRLAG 257          
BLAST of mRNA_M-pyrifera_M_contig97685.22492.1 vs. uniprot
Match: A0A523M497_9GAMM (NAD(P)-dependent oxidoreductase n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A523M497_9GAMM)

HSP 1 Score: 217 bits (552), Expect = 4.920e-67
Identity = 132/231 (57.14%), Postives = 156/231 (67.53%), Query Frame = 1
Query:    1 RSAASRQRADAAGLTDAGSLADLIAAADTVVSVCPPDATLVVAETVRDLGGVARYVDANAIAPDTARQIDAMVTEAGGVFVDGGIIGPPANQAGTTRLYLSGDDAPLVADAFGGSLVEAIATEGGPGGASALKLCYAGWTKGSSALLLTMRSAAESAGVADALMAEWDRSQPGLVERSTRTAAGAAPKAWRWVGEMDEIAAFLEALELPGGSFTAAAELYTRLEGCKDKFD 693
            RS A+R+RA  +G     +  DL+   D VVSVCPPDA L VA+ V  +G    +VDANA+AP TAR I   V  AG  F+DGGIIGPPA Q GTTRLYLSG DA +VA  F GS ++A A     G ASALK+CYA +TKGSSALLL +R+ AE+ GV   L+AEWD SQPGL  RS  TA+  A K WR+VGEM EIAA  E+  LPGG   AAA+LY RLE  KD+ D
Sbjct:   34 RSDATRRRAARSGALPLANETDLVGF-DAVVSVCPPDAALAVADAVIAMGFTGIFVDANAVAPATARAIGDAVASAGCAFIDGGIIGPPAWQPGTTRLYLSGPDADIVAGWFAGSALQARAIGAEVGAASALKMCYAAFTKGSSALLLGVRALAEAEGVQQELLAEWDLSQPGLAARSASTASAVAAKGWRFVGEMREIAATFESRGLPGGFHRAAADLYQRLEEFKDESD 263          
BLAST of mRNA_M-pyrifera_M_contig97685.22492.1 vs. uniprot
Match: A0A1F7MZQ4_9BACT (Uncharacterized protein n=1 Tax=Candidatus Rokubacteria bacterium RIFCSPHIGHO2_02_FULL_73_26 TaxID=1802102 RepID=A0A1F7MZQ4_9BACT)

HSP 1 Score: 214 bits (544), Expect = 8.440e-66
Identity = 129/232 (55.60%), Postives = 150/232 (64.66%), Query Frame = 1
Query:    1 RSAASRQRADAAGLTDAGSLADLIAAADTVVSVCPPDATLVVAETVRDLGGVARYVDANAIAPDTARQIDAMVTEAGGVFVDGGIIGPPANQAGTTRLYLSGDDAPLVADAFGGSLVEAIATEGGPGGASALKLCYAGWTKGSSALLLTMRSAAESAGVADALMAEWDRSQPGLVERSTRTAAGAAPKAWRWVGEMDEIAAFLEALELPGGSFTAAAELYTRLEGCKDKFDP 696
            R   +R+RA AAGL DAG+LA L+AA+D ++SVCPP A   VA  V        YVDANAIAP T R++ A+V +AG  FVDGGIIGPP    GT RLYL+GD A  VA  F G  +EAIA  G PG ASALK  YAGW KG +ALL+  R+ A + GV  AL+AEW  SQP L  RS       A KAWR+VGEM+EIAA   A  LP G   AAAE+Y RLEG KD   P
Sbjct:   34 RGGVTRERAAAAGLEDAGTLAGLVAASDVILSVCPPAAARDVARAVAAHRFAGLYVDANAIAPATTREVGALVEKAGARFVDGGIIGPPPVTRGTARLYLAGDGAARVAALFAGGALEAIALAGPPGAASALKAAYAGWNKGQAALLVAARAFAAAEGVEAALLAEWKLSQPDLPARSEAAVRSNARKAWRFVGEMEEIAASFAAAGLPEGFHAAAAEVYRRLEGWKDAATP 265          
BLAST of mRNA_M-pyrifera_M_contig97685.22492.1 vs. uniprot
Match: A0A838ECJ0_9ACTN (DUF1932 domain-containing protein n=1 Tax=Euzebyales bacterium TaxID=2740540 RepID=A0A838ECJ0_9ACTN)

HSP 1 Score: 213 bits (541), Expect = 2.400e-65
Identity = 129/223 (57.85%), Postives = 146/223 (65.47%), Query Frame = 1
Query:    1 RSAASRQRADAAGLTDAGSLADLIAAADTVVSVCPPDATLVVAETVRDLGGVARYVDANAIAPDTARQIDAMVTEAGGVFVDGGIIGPPANQAGTTRLYLSGDDAPLVADAFGGSLVEAIATEGGPGGASALKLCYAGWTKGSSALLLTMRSAAESAGVADALMAEWDRSQPGLVERSTRTAAGAAPKAWRWVGEMDEIAAFLEALELPGGSFTAAAELYTRL 669
            RSAA+R RA   GL DAG LAD + AAD V+SVCPP A   VAE V   G    YVD NA++P TA ++   VT AG  + DGGI+GPPA Q GTTRLYLSG  A  VA  F G  +EAI   GGP  ASALK  YA WTKGS+ALLL +R+ A + GV  AL+ EWDRS P L  RS  TAA  APKAWR+ GEMDEIA    A  LP G   AAAE+Y RL
Sbjct:   35 RSAATRARAGEVGLEDAGRLADALGAADAVLSVCPPHAATQVAEAVASEGFAGIYVDVNAVSPATAERVGDAVTAAGASYTDGGIVGPPAWQPGTTRLYLSGAQADAVAAWFAGGPLEAIPLSGGPTAASALKAAYAAWTKGSAALLLAVRALAGANGVEAALLDEWDRSLPELSGRSASTAARTAPKAWRFSGEMDEIADAFTAAGLPDGFHRAAAEVYGRL 257          
BLAST of mRNA_M-pyrifera_M_contig97685.22492.1 vs. uniprot
Match: A0A1F7PNI7_9BACT (Uncharacterized protein n=1 Tax=Candidatus Rokubacteria bacterium RIFCSPLOWO2_12_FULL_71_22 TaxID=1802110 RepID=A0A1F7PNI7_9BACT)

HSP 1 Score: 212 bits (540), Expect = 4.590e-65
Identity = 129/228 (56.58%), Postives = 150/228 (65.79%), Query Frame = 1
Query:    1 RSAASRQRADAAGLTDAGSLADLIAAADTVVSVCPPDATLVVAETVRDLGGVARYVDANAIAPDTARQIDAMVTEAGGVFVDGGIIGPPANQAGTTRLYLSGDDAPLVADAFGGSLVEAIATEGGPGGASALKLCYAGWTKGSSALLLTMRSAAESAGVADALMAEWDRSQPGLVERSTRTAAGAAPKAWRWVGEMDEIAAFLEALELPGGSFTAAAELYTRLEGCKD 684
            R  A+RQRA AAGL DAG+LA L+AA+D ++SVCPP A L VA+ V        YVDANAIAP T R + A V +AG  FVDGGIIGPP    GT RLYL+GD A  VA  F    +EAIA +G PG ASALK  YAGW KG +ALL+  R+ A + GV  AL+AEW  SQ  L  RS       A KAWR+VGEM+EIA    A  LPGG  TAAAE+Y RLEG +D
Sbjct:   34 RGGATRQRAAAAGLEDAGTLASLVAASDVILSVCPPAAALDVAQAVAAHRFAGLYVDANAIAPATTRTVGACVEKAGARFVDGGIIGPPPVTRGTARLYLAGDGAVRVAALFAEGPLEAIALDGPPGAASALKAAYAGWNKGHAALLMAARAFAAAEGVEAALLAEWKISQADLPARSEAAVRSNARKAWRFVGEMEEIAVAFAAAGLPGGFHTAAAEIYRRLEGWQD 261          
BLAST of mRNA_M-pyrifera_M_contig97685.22492.1 vs. uniprot
Match: A0A523LG09_9GAMM (DUF1932 domain-containing protein n=2 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A523LG09_9GAMM)

HSP 1 Score: 211 bits (538), Expect = 5.670e-65
Identity = 126/232 (54.31%), Postives = 158/232 (68.10%), Query Frame = 1
Query:    1 RSAASRQRADAAGLTDAGSLADLIAAADTVVSVCPPDATLVVAETVRDLGGVARYVDANAIAPDTARQIDAMVTEAGGVFVDGGIIGPPANQAGTTRLYLSGDDAPLVADAFGGSLVEAIATEGGPGGASALKLCYAGWTKGSSALLLTMRSAAESAGVADALMAEWDRSQPGLVERSTRTAAGAAPKAWRWVGEMDEIAAFLEALELPGGSFTAAAELYTRLEGCKDKFDP 696
            RS A+ +RA AAG +   SL +L+A ++ V+SVCPP+A + VA++V   G    Y+DANA+AP TARQI A++   G  FVDGGIIGPPA +AG+TRLYLSG  A   A  F G L+EAI  EG PG ASALK+CYA +TKG+SA+LL +R+ AES  +   L+ EW  SQ GL +RS R A G APKAWR+VGEM+EIAA   A  LP G   AAAE+Y R+   K    P
Sbjct:   33 RSDATVKRAMAAGFSSCVSLLELLAQSEGVISVCPPNAAVAVAQSVVAAGFDGIYLDANAVAPHTARQIHALL---GDRFVDGGIIGPPALRAGSTRLYLSGSQASTTATWFAGGLLEAITIEGAPGAASALKMCYAAYTKGTSAMLLAIRALAESEEITGPLLDEWAISQKGLADRSERAAIGTAPKAWRFVGEMEEIAATFAAARLPDGFHGAAAEIYRRMADLKSVQSP 261          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig97685.22492.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A832DLJ7_9BACT1.190e-7055.56NAD(P)-dependent oxidoreductase n=1 Tax=Candidatus... [more]
UPI001BC0B1A41.810e-7055.41DUF1932 domain-containing protein n=1 Tax=Actinomy... [more]
A0A7V3XKS1_9BACT3.130e-6853.95NAD(P)-dependent oxidoreductase n=1 Tax=Candidatus... [more]
A0A1F4CL81_9PROT5.020e-6856.58DUF1932 domain-containing protein n=2 Tax=unclassi... [more]
A0A6B0W5L7_9BACT1.780e-6758.26DUF1932 domain-containing protein n=6 Tax=Holophag... [more]
A0A523M497_9GAMM4.920e-6757.14NAD(P)-dependent oxidoreductase n=1 Tax=Gammaprote... [more]
A0A1F7MZQ4_9BACT8.440e-6655.60Uncharacterized protein n=1 Tax=Candidatus Rokubac... [more]
A0A838ECJ0_9ACTN2.400e-6557.85DUF1932 domain-containing protein n=1 Tax=Euzebyal... [more]
A0A1F7PNI7_9BACT4.590e-6556.58Uncharacterized protein n=1 Tax=Candidatus Rokubac... [more]
A0A523LG09_9GAMM5.670e-6554.31DUF1932 domain-containing protein n=2 Tax=Gammapro... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig97685contigM-pyrifera_M_contig97685:11..706 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score197.2
Seed ortholog evalue8.4e-48
Seed eggNOG ortholog1160137.KB907308_gene6991
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Domain of unknown function (DUF1932)
EggNOG OGs2GTGE@201174,4G4IQ@85025,COG2084@1,COG2084@2
COG Functional cat.I
Best tax levelNocardiaceae
Best eggNOG OGNA|NA|NA
Exons1
Model size696
Cds size696
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816893.6092632-CDS-M-pyrifera_M_contig97685:10..7061622816893.6092632-CDS-M-pyrifera_M_contig97685:10..706Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig97685 11..706 -
1692278240.8464868-CDS-M-pyrifera_M_contig97685:10..7061692278240.8464868-CDS-M-pyrifera_M_contig97685:10..706Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig97685 11..706 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig97685.22492.1prot_M-pyrifera_M_contig97685.22492.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig97685 11..706 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig97685.22492.1

>prot_M-pyrifera_M_contig97685.22492.1 ID=prot_M-pyrifera_M_contig97685.22492.1|Name=mRNA_M-pyrifera_M_contig97685.22492.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=232bp
RSAASRQRADAAGLTDAGSLADLIAAADTVVSVCPPDATLVVAETVRDLG
GVARYVDANAIAPDTARQIDAMVTEAGGVFVDGGIIGPPANQAGTTRLYL
SGDDAPLVADAFGGSLVEAIATEGGPGGASALKLCYAGWTKGSSALLLTM
RSAAESAGVADALMAEWDRSQPGLVERSTRTAAGAAPKAWRWVGEMDEIA
AFLEALELPGGSFTAAAELYTRLEGCKDKFDP
back to top

mRNA from alignment at M-pyrifera_M_contig97685:11..706-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig97685.22492.1 ID=mRNA_M-pyrifera_M_contig97685.22492.1|Name=mRNA_M-pyrifera_M_contig97685.22492.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=696bp|location=Sequence derived from alignment at M-pyrifera_M_contig97685:11..706- (Macrocystis pyrifera P11B4 male)
CGGTCGGCCGCCAGTCGTCAGCGAGCCGATGCCGCCGGGCTCACCGATGC CGGCTCACTCGCCGACCTGATCGCCGCAGCCGACACCGTCGTGTCGGTGT GTCCGCCTGATGCGACACTGGTCGTCGCCGAAACGGTCCGCGACCTCGGG GGTGTCGCTCGATACGTCGACGCCAATGCGATCGCTCCCGACACCGCTCG ACAGATCGACGCCATGGTGACCGAGGCCGGCGGCGTGTTCGTCGACGGCG GCATCATCGGCCCGCCGGCCAACCAGGCCGGTACCACTCGGCTCTATCTG TCTGGCGACGATGCACCGCTCGTCGCCGACGCGTTCGGCGGTTCGCTCGT CGAGGCCATCGCCACCGAGGGCGGACCGGGCGGCGCCTCGGCGCTCAAGC TCTGTTACGCCGGGTGGACCAAGGGATCGTCGGCTCTCCTGCTGACCATG CGCAGCGCGGCCGAATCGGCCGGGGTCGCCGATGCCCTGATGGCCGAATG GGATCGATCCCAGCCCGGCCTGGTCGAGCGCTCGACCCGAACGGCGGCGG GAGCGGCTCCCAAGGCGTGGCGCTGGGTCGGCGAGATGGACGAGATCGCT GCGTTCCTCGAGGCACTCGAGCTGCCCGGTGGATCGTTCACCGCTGCGGC CGAGCTCTACACCCGACTCGAGGGATGCAAGGACAAGTTCGATCCT
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig97685:11..706-

>mRNA_M-pyrifera_M_contig97685.22492.1 ID=mRNA_M-pyrifera_M_contig97685.22492.1|Name=mRNA_M-pyrifera_M_contig97685.22492.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1392bp|location=Sequence derived from alignment at M-pyrifera_M_contig97685:11..706- (Macrocystis pyrifera P11B4 male)
CGGTCGGCCGCCAGTCGTCAGCGAGCCGATGCCGCCGGGCTCACCGATGC
CGGCTCACTCGCCGACCTGATCGCCGCAGCCGACACCGTCGTGTCGGTGT
GTCCGCCTGATGCGACACTGGTCGTCGCCGAAACGGTCCGCGACCTCGGG
GGTGTCGCTCGATACGTCGACGCCAATGCGATCGCTCCCGACACCGCTCG
ACAGATCGACGCCATGGTGACCGAGGCCGGCGGCGTGTTCGTCGACGGCG
GCATCATCGGCCCGCCGGCCAACCAGGCCGGTACCACTCGGCTCTATCTG
TCTGGCGACGATGCACCGCTCGTCGCCGACGCGTTCGGCGGTTCGCTCGT
CGAGGCCATCGCCACCGAGGGCGGACCGGGCGGCGCCTCGGCGCTCAAGC
TCTGTTACGCCGGGTGGACCAAGGGATCGTCGGCTCTCCTGCTGACCATG
CGCAGCGCGGCCGAATCGGCCGGGGTCGCCGATGCCCTGATGGCCGAATG
GGATCGATCCCAGCCCGGCCTGGTCGAGCGCTCGACCCGAACGGCGGCGG
GAGCGGCTCCCAAGGCGTGGCGCTGGGTCGGCGAGATGGACGAGATCGCT
GCGTTCCTCGAGGCACTCGAGCTGCCCGGTGGATCGTTCACCGCTGCGGC
CGAGCTCTACACCCGACTCGAGGGATGCAAGGACAAGTTCGATCCTCGGT
CGGCCGCCAGTCGTCAGCGAGCCGATGCCGCCGGGCTCACCGATGCCGGC
TCACTCGCCGACCTGATCGCCGCAGCCGACACCGTCGTGTCGGTGTGTCC
GCCTGATGCGACACTGGTCGTCGCCGAAACGGTCCGCGACCTCGGGGGTG
TCGCTCGATACGTCGACGCCAATGCGATCGCTCCCGACACCGCTCGACAG
ATCGACGCCATGGTGACCGAGGCCGGCGGCGTGTTCGTCGACGGCGGCAT
CATCGGCCCGCCGGCCAACCAGGCCGGTACCACTCGGCTCTATCTGTCTG
GCGACGATGCACCGCTCGTCGCCGACGCGTTCGGCGGTTCGCTCGTCGAG
GCCATCGCCACCGAGGGCGGACCGGGCGGCGCCTCGGCGCTCAAGCTCTG
TTACGCCGGGTGGACCAAGGGATCGTCGGCTCTCCTGCTGACCATGCGCA
GCGCGGCCGAATCGGCCGGGGTCGCCGATGCCCTGATGGCCGAATGGGAT
CGATCCCAGCCCGGCCTGGTCGAGCGCTCGACCCGAACGGCGGCGGGAGC
GGCTCCCAAGGCGTGGCGCTGGGTCGGCGAGATGGACGAGATCGCTGCGT
TCCTCGAGGCACTCGAGCTGCCCGGTGGATCGTTCACCGCTGCGGCCGAG
CTCTACACCCGACTCGAGGGATGCAAGGACAAGTTCGATCCT
back to top