mRNA_M-pyrifera_M_contig97618.22488.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig97618.22488.1
Unique NamemRNA_M-pyrifera_M_contig97618.22488.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig97618.22488.1 vs. uniprot
Match: A0A0L0HGY4_SPIPD (Uncharacterized protein n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0HGY4_SPIPD)

HSP 1 Score: 55.1 bits (131), Expect = 3.330e-8
Identity = 28/53 (52.83%), Postives = 39/53 (73.58%), Query Frame = 1
Query:   13 RLIDSRTKTDSQLRENNGVLAELEAMKEGETVYRLMGPVLAKQEHSEAVSHVK 171
            +++ SRT+ +SQL+EN  V  E + MK+  TVY+L+GPVL KQE  EA S+VK
Sbjct:   23 KIVQSRTQLESQLKENEMVAKEFDLMKDDATVYKLIGPVLVKQEKVEATSNVK 75          
BLAST of mRNA_M-pyrifera_M_contig97618.22488.1 vs. uniprot
Match: A0A2C5ZJ98_9HYPO (Uncharacterized protein n=2 Tax=Ophiocordyceps TaxID=474995 RepID=A0A2C5ZJ98_9HYPO)

HSP 1 Score: 54.7 bits (130), Expect = 4.510e-8
Identity = 29/54 (53.70%), Postives = 40/54 (74.07%), Query Frame = 1
Query:   10 QRLIDSRTKTDSQLRENNGVLAELEAMKEGETVYRLMGPVLAKQEHSEAVSHVK 171
            Q+ + SR K ++Q +EN GV  E EA++EGET+Y+L+GPVL KQ+  EA S VK
Sbjct:   23 QKHVSSRQKLEAQKQENLGVQKEFEALEEGETIYKLVGPVLLKQDKVEAESTVK 76          
BLAST of mRNA_M-pyrifera_M_contig97618.22488.1 vs. uniprot
Match: B2AFE5_PODAN (Podospora anserina S mat+ genomic DNA chromosome 5, supercontig 3 n=2 Tax=Podospora TaxID=5144 RepID=B2AFE5_PODAN)

HSP 1 Score: 53.9 bits (128), Expect = 1.100e-7
Identity = 27/54 (50.00%), Postives = 40/54 (74.07%), Query Frame = 1
Query:   10 QRLIDSRTKTDSQLRENNGVLAELEAMKEGETVYRLMGPVLAKQEHSEAVSHVK 171
            Q  + SR K ++Q++EN GV  E E +K+GET+Y+L+GPVL KQ+ ++A S VK
Sbjct:   23 QDTVTSRQKLEAQMQENLGVQQEFEKLKDGETIYKLIGPVLLKQDRTDAESTVK 76          
BLAST of mRNA_M-pyrifera_M_contig97618.22488.1 vs. uniprot
Match: A0A4P9WK02_9FUNG (Prefoldin (Fragment) n=1 Tax=Blyttiomyces helicus TaxID=388810 RepID=A0A4P9WK02_9FUNG)

HSP 1 Score: 53.1 bits (126), Expect = 1.260e-7
Identity = 27/56 (48.21%), Postives = 41/56 (73.21%), Query Frame = 1
Query:    4 ESQRLIDSRTKTDSQLRENNGVLAELEAMKEGETVYRLMGPVLAKQEHSEAVSHVK 171
            E Q+++ SRT+ +SQL EN  V  E + +K+  T+Y+L+GPVL KQ+  EAV++VK
Sbjct:   16 EFQKVVQSRTQLESQLNENEMVSREFDLLKDDATIYKLIGPVLVKQDKVEAVTNVK 71          
BLAST of mRNA_M-pyrifera_M_contig97618.22488.1 vs. uniprot
Match: A0A179FKP1_METCM (Prefoldin subunit 6 n=2 Tax=Metacordyceps chlamydosporia TaxID=280754 RepID=A0A179FKP1_METCM)

HSP 1 Score: 53.5 bits (127), Expect = 1.490e-7
Identity = 30/54 (55.56%), Postives = 36/54 (66.67%), Query Frame = 1
Query:   10 QRLIDSRTKTDSQLRENNGVLAELEAMKEGETVYRLMGPVLAKQEHSEAVSHVK 171
            Q  + SR K  SQ +EN GV  E E + EGET+Y+LMGPVL KQ+  EA S VK
Sbjct:   23 QNTVTSRQKLQSQQQENAGVYKEFENLGEGETIYKLMGPVLLKQDKVEAESTVK 76          
BLAST of mRNA_M-pyrifera_M_contig97618.22488.1 vs. uniprot
Match: G4N2G5_MAGO7 (Uncharacterized protein n=4 Tax=Pyricularia TaxID=48558 RepID=G4N2G5_MAGO7)

HSP 1 Score: 53.1 bits (126), Expect = 1.870e-7
Identity = 28/51 (54.90%), Postives = 37/51 (72.55%), Query Frame = 1
Query:   19 IDSRTKTDSQLRENNGVLAELEAMKEGETVYRLMGPVLAKQEHSEAVSHVK 171
            + +R K ++QL+EN GV  E E MK+GET+Y+L GPVL KQ+  EA S VK
Sbjct:   26 VQARQKLEAQLQENLGVQKEFEKMKDGETIYKLTGPVLLKQDKVEADSTVK 76          
BLAST of mRNA_M-pyrifera_M_contig97618.22488.1 vs. uniprot
Match: A0A1B5L6J6_USTVR (Uncharacterized protein n=1 Tax=Ustilaginoidea virens TaxID=1159556 RepID=A0A1B5L6J6_USTVR)

HSP 1 Score: 52.8 bits (125), Expect = 2.970e-7
Identity = 29/54 (53.70%), Postives = 37/54 (68.52%), Query Frame = 1
Query:   10 QRLIDSRTKTDSQLRENNGVLAELEAMKEGETVYRLMGPVLAKQEHSEAVSHVK 171
            Q ++DSR K  SQ +EN GV  E + + E ET+Y+LMGPVL KQ+  EA S VK
Sbjct:   23 QDIVDSRQKLQSQQQENAGVYKEFQNLGEDETIYKLMGPVLLKQDKVEAESTVK 76          
BLAST of mRNA_M-pyrifera_M_contig97618.22488.1 vs. uniprot
Match: A0A7D5Z3M3_9HYPO (Prefoldin subunit 6 n=9 Tax=Metarhizium TaxID=5529 RepID=A0A7D5Z3M3_9HYPO)

HSP 1 Score: 52.4 bits (124), Expect = 4.040e-7
Identity = 29/54 (53.70%), Postives = 36/54 (66.67%), Query Frame = 1
Query:   10 QRLIDSRTKTDSQLRENNGVLAELEAMKEGETVYRLMGPVLAKQEHSEAVSHVK 171
            Q  ++SR K  SQ +EN GV  E E + E ET+Y+LMGPVL KQ+  EA S VK
Sbjct:   23 QNTVNSRQKLQSQQQENAGVFKEFEKLGEDETIYKLMGPVLLKQDKVEAESTVK 76          
BLAST of mRNA_M-pyrifera_M_contig97618.22488.1 vs. uniprot
Match: A0A369GI07_9HYPO (Uncharacterized protein n=2 Tax=Ophiocordyceps TaxID=474995 RepID=A0A369GI07_9HYPO)

HSP 1 Score: 52.0 bits (123), Expect = 5.080e-7
Identity = 28/54 (51.85%), Postives = 38/54 (70.37%), Query Frame = 1
Query:   10 QRLIDSRTKTDSQLRENNGVLAELEAMKEGETVYRLMGPVLAKQEHSEAVSHVK 171
            Q+ + SR K ++Q +EN GV  E E + EGET+Y+L+GPVL KQ+  EA S VK
Sbjct:   23 QKRVSSRQKLEAQKQENLGVKKEFEELGEGETIYKLVGPVLLKQDKVEAESTVK 76          
BLAST of mRNA_M-pyrifera_M_contig97618.22488.1 vs. uniprot
Match: Q2GQ73_CHAGB (Uncharacterized protein n=1 Tax=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) TaxID=306901 RepID=Q2GQ73_CHAGB)

HSP 1 Score: 53.5 bits (127), Expect = 5.190e-7
Identity = 28/53 (52.83%), Postives = 38/53 (71.70%), Query Frame = 1
Query:   10 QRLIDSRTKTDSQLRENNGVLAELEAMKEGETVYRLMGPVLAKQEHSEAVSHV 168
            Q  + SR K ++Q++EN GV  E   +KEGET+Y+L+GPVL KQE +EA S V
Sbjct:   23 QDTVQSRQKLEAQMQENLGVQKEFSKLKEGETIYKLIGPVLLKQEKAEAESTV 75          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig97618.22488.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0L0HGY4_SPIPD3.330e-852.83Uncharacterized protein n=2 Tax=Spizellomyces TaxI... [more]
A0A2C5ZJ98_9HYPO4.510e-853.70Uncharacterized protein n=2 Tax=Ophiocordyceps Tax... [more]
B2AFE5_PODAN1.100e-750.00Podospora anserina S mat+ genomic DNA chromosome 5... [more]
A0A4P9WK02_9FUNG1.260e-748.21Prefoldin (Fragment) n=1 Tax=Blyttiomyces helicus ... [more]
A0A179FKP1_METCM1.490e-755.56Prefoldin subunit 6 n=2 Tax=Metacordyceps chlamydo... [more]
G4N2G5_MAGO71.870e-754.90Uncharacterized protein n=4 Tax=Pyricularia TaxID=... [more]
A0A1B5L6J6_USTVR2.970e-753.70Uncharacterized protein n=1 Tax=Ustilaginoidea vir... [more]
A0A7D5Z3M3_9HYPO4.040e-753.70Prefoldin subunit 6 n=9 Tax=Metarhizium TaxID=5529... [more]
A0A369GI07_9HYPO5.080e-751.85Uncharacterized protein n=2 Tax=Ophiocordyceps Tax... [more]
Q2GQ73_CHAGB5.190e-752.83Uncharacterized protein n=1 Tax=Chaetomium globosu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig97618contigM-pyrifera_M_contig97618:538..708 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size171
Cds size171
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816893.45723-CDS-M-pyrifera_M_contig97618:537..7081622816893.45723-CDS-M-pyrifera_M_contig97618:537..708Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig97618 538..708 +
1692278240.763589-CDS-M-pyrifera_M_contig97618:537..7081692278240.763589-CDS-M-pyrifera_M_contig97618:537..708Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig97618 538..708 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig97618.22488.1prot_M-pyrifera_M_contig97618.22488.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig97618 538..708 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig97618.22488.1

>prot_M-pyrifera_M_contig97618.22488.1 ID=prot_M-pyrifera_M_contig97618.22488.1|Name=mRNA_M-pyrifera_M_contig97618.22488.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=57bp
AESQRLIDSRTKTDSQLRENNGVLAELEAMKEGETVYRLMGPVLAKQEHS
EAVSHVK
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mRNA from alignment at M-pyrifera_M_contig97618:538..708+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig97618.22488.1 ID=mRNA_M-pyrifera_M_contig97618.22488.1|Name=mRNA_M-pyrifera_M_contig97618.22488.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=171bp|location=Sequence derived from alignment at M-pyrifera_M_contig97618:538..708+ (Macrocystis pyrifera P11B4 male)
GCAGAATCTCAACGCTTGATTGATAGCCGAACCAAGACAGACTCGCAACT GAGAGAGAACAATGGAGTGTTGGCAGAGTTGGAGGCGATGAAGGAAGGGG AGACTGTGTACAGGCTTATGGGCCCAGTGCTCGCGAAACAAGAGCACAGC GAGGCCGTTTCACACGTCAAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig97618:538..708+

>mRNA_M-pyrifera_M_contig97618.22488.1 ID=mRNA_M-pyrifera_M_contig97618.22488.1|Name=mRNA_M-pyrifera_M_contig97618.22488.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=342bp|location=Sequence derived from alignment at M-pyrifera_M_contig97618:538..708+ (Macrocystis pyrifera P11B4 male)
GCAGAATCTCAACGCTTGATTGATAGCCGAACCAAGACAGACTCGCAACT
GAGAGAGAACAATGGAGTGTTGGCAGAGTTGGAGGCGATGAAGGAAGGGG
AGACTGTGTACAGGCTTATGGGCCCAGTGCTCGCGAAACAAGAGCACAGC
GAGGCCGTTTCACACGTCAAAGCAGAATCTCAACGCTTGATTGATAGCCG
AACCAAGACAGACTCGCAACTGAGAGAGAACAATGGAGTGTTGGCAGAGT
TGGAGGCGATGAAGGAAGGGGAGACTGTGTACAGGCTTATGGGCCCAGTG
CTCGCGAAACAAGAGCACAGCGAGGCCGTTTCACACGTCAAA
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