mRNA_M-pyrifera_M_contig97603.22484.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig97603.22484.1
Unique NamemRNA_M-pyrifera_M_contig97603.22484.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig97603.22484.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig97603contigM-pyrifera_M_contig97603:3..635 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score62.0
Seed ortholog evalue3.8e-07
Seed eggNOG ortholog38833.XP_003058822.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Possible plasma membrane-binding motif in junctophilins, PIP-5-kinases and protein kinases.
EggNOG OGs34N7F@3041,380CB@33090,COG4642@1,KOG0231@2759
COG Functional cat.S
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size633
Cds size633
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816893.3001258-CDS-M-pyrifera_M_contig97603:2..6351622816893.3001258-CDS-M-pyrifera_M_contig97603:2..635Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig97603 3..635 -
1692278240.6787765-CDS-M-pyrifera_M_contig97603:2..6351692278240.6787765-CDS-M-pyrifera_M_contig97603:2..635Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig97603 3..635 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig97603.22484.1prot_M-pyrifera_M_contig97603.22484.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig97603 3..635 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig97603.22484.1

>prot_M-pyrifera_M_contig97603.22484.1 ID=prot_M-pyrifera_M_contig97603.22484.1|Name=mRNA_M-pyrifera_M_contig97603.22484.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=211bp
RFHGKGTATLRGGKLYEGEWVHGVMQGQGKYVWADGCIYSGQMENGKPHG
EGTLTLPDGSKYHGNFVHGRRDGYGVYVDGESGNAYEGSWKEGLRSGQGK
LRCVDGSWYRGGWHLGKPEGHGVQRFASGDVYVGGFRNGRREGFGRMVWQ
SLSPAEVYEGAWVEDHPDGTGVYVWLEPATGIGGFPGQSSRYEGEMLRGE
RDGLGTFLYRD
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mRNA from alignment at M-pyrifera_M_contig97603:3..635-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig97603.22484.1 ID=mRNA_M-pyrifera_M_contig97603.22484.1|Name=mRNA_M-pyrifera_M_contig97603.22484.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=633bp|location=Sequence derived from alignment at M-pyrifera_M_contig97603:3..635- (Macrocystis pyrifera P11B4 male)
AGATTCCATGGAAAGGGGACTGCTACGTTGCGTGGTGGAAAGTTGTATGA
AGGAGAATGGGTACATGGTGTCATGCAAGGGCAAGGAAAGTATGTTTGGG
CTGATGGATGTATATATTCTGGGCAAATGGAAAATGGCAAACCACATGGA
GAAGGCACATTGACGTTACCAGATGGTTCCAAGTATCATGGCAACTTTGT
ACATGGTCGACGTGATGGATATGGTGTGTATGTGGATGGAGAGAGTGGGA
ATGCGTACGAGGGGTCGTGGAAAGAAGGCTTGCGTAGCGGACAGGGCAAA
TTACGATGTGTAGATGGAAGTTGGTACCGTGGTGGATGGCATCTGGGGAA
GCCTGAAGGACATGGAGTGCAACGGTTTGCGAGTGGGGATGTGTATGTTG
GTGGGTTTCGAAATGGACGCCGTGAAGGGTTTGGACGGATGGTTTGGCAA
AGTTTGAGTCCTGCTGAAGTATATGAAGGTGCTTGGGTGGAAGATCATCC
AGATGGGACAGGTGTGTACGTTTGGCTAGAACCAGCTACAGGAATTGGTG
GATTTCCAGGACAAAGTTCGAGATATGAAGGGGAAATGCTTCGTGGAGAA
CGTGATGGGTTGGGGACTTTTCTATACAGAGAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig97603:3..635-

>mRNA_M-pyrifera_M_contig97603.22484.1 ID=mRNA_M-pyrifera_M_contig97603.22484.1|Name=mRNA_M-pyrifera_M_contig97603.22484.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1266bp|location=Sequence derived from alignment at M-pyrifera_M_contig97603:3..635- (Macrocystis pyrifera P11B4 male)
AGATTCCATGGAAAGGGGACTGCTACGTTGCGTGGTGGAAAGTTGTATGA
AGGAGAATGGGTACATGGTGTCATGCAAGGGCAAGGAAAGTATGTTTGGG
CTGATGGATGTATATATTCTGGGCAAATGGAAAATGGCAAACCACATGGA
GAAGGCACATTGACGTTACCAGATGGTTCCAAGTATCATGGCAACTTTGT
ACATGGTCGACGTGATGGATATGGTGTGTATGTGGATGGAGAGAGTGGGA
ATGCGTACGAGGGGTCGTGGAAAGAAGGCTTGCGTAGCGGACAGGGCAAA
TTACGATGTGTAGATGGAAGTTGGTACCGTGGTGGATGGCATCTGGGGAA
GCCTGAAGGACATGGAGTGCAACGGTTTGCGAGTGGGGATGTGTATGTTG
GTGGGTTTCGAAATGGACGCCGTGAAGGGTTTGGACGGATGGTTTGGCAA
AGTTTGAGTCCTGCTGAAGTATATGAAGGTGCTTGGGTGGAAGATCATCC
AGATGGGACAGGTGTGTACGTTTGGCTAGAACCAGCTACAGGAATTGGTG
GATTTCCAGGACAAAGTTCGAGATATGAAGGGGAAATGCTTCGTGGAGAA
CGTGATGGGTTGGGGACTTTTCTATACAGAGATAGATTCCATGGAAAGGG
GACTGCTACGTTGCGTGGTGGAAAGTTGTATGAAGGAGAATGGGTACATG
GTGTCATGCAAGGGCAAGGAAAGTATGTTTGGGCTGATGGATGTATATAT
TCTGGGCAAATGGAAAATGGCAAACCACATGGAGAAGGCACATTGACGTT
ACCAGATGGTTCCAAGTATCATGGCAACTTTGTACATGGTCGACGTGATG
GATATGGTGTGTATGTGGATGGAGAGAGTGGGAATGCGTACGAGGGGTCG
TGGAAAGAAGGCTTGCGTAGCGGACAGGGCAAATTACGATGTGTAGATGG
AAGTTGGTACCGTGGTGGATGGCATCTGGGGAAGCCTGAAGGACATGGAG
TGCAACGGTTTGCGAGTGGGGATGTGTATGTTGGTGGGTTTCGAAATGGA
CGCCGTGAAGGGTTTGGACGGATGGTTTGGCAAAGTTTGAGTCCTGCTGA
AGTATATGAAGGTGCTTGGGTGGAAGATCATCCAGATGGGACAGGTGTGT
ACGTTTGGCTAGAACCAGCTACAGGAATTGGTGGATTTCCAGGACAAAGT
TCGAGATATGAAGGGGAAATGCTTCGTGGAGAACGTGATGGGTTGGGGAC
TTTTCTATACAGAGAT
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