mRNA_M-pyrifera_M_contig9738.22432.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig9738.22432.1
Unique NamemRNA_M-pyrifera_M_contig9738.22432.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig9738.22432.1 vs. uniprot
Match: A0A6H5K794_9PHAE (Glyco_trans_2-like domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K794_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 1.510e-14
Identity = 40/57 (70.18%), Postives = 44/57 (77.19%), Query Frame = 1 
Query:   22 TVTVLLPVKDGGDRLLDAVESVVACCCAGEAPPDWQLELLIIDDGSRDGAVDRATAA 192
            TVTVLLPVK+GGDRLL+AVESV AC  +   P  W  ELLI+DDGS DGAVDRA  A
Sbjct:  732 TVTVLLPVKNGGDRLLEAVESVAAC--SRRMPRGWCSELLIVDDGSGDGAVDRAVTA 786
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BLAST of mRNA_M-pyrifera_M_contig9738.22432.1 vs. uniprot
Match: D7FI43_ECTSI (Bifunctional glycosyltransferase, family GT74 / family GT2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI43_ECTSI)

HSP 1 Score: 73.6 bits (179), Expect = 9.770e-14
Identity = 39/57 (68.42%), Postives = 42/57 (73.68%), Query Frame = 1 
Query:   22 TVTVLLPVKDGGDRLLDAVESVVACCCAGEAPPDWQLELLIIDDGSRDGAVDRATAA 192
            TVTVLLPVK+GG RLL+AVESV AC  A   P  W  ELLI+DDGS DGAVDR   A
Sbjct:  430 TVTVLLPVKNGGGRLLEAVESVAAC--ARRMPRGWCSELLIVDDGSEDGAVDRVVTA 484
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BLAST of mRNA_M-pyrifera_M_contig9738.22432.1 vs. uniprot
Match: A0A317MWT9_9GAMM (Glycosyl transferase family 2 n=2 Tax=Plasticicumulans acidivorans TaxID=886464 RepID=A0A317MWT9_9GAMM)

HSP 1 Score: 53.9 bits (128), Expect = 7.710e-7
Identity = 30/60 (50.00%), Postives = 41/60 (68.33%), Query Frame = 1 
Query:   13 QRPTVTVLLPVKDGGDRLLDAVESVVACCCAGEAPPDW-QLELLIIDDGSRDGAVDRATA 189
            Q+P+V+V+LPV+DGGD LL AV SV+A         D+   EL+++DDGS+DGA  R  A
Sbjct:    2 QQPSVSVILPVRDGGDWLLAAVASVLA--------QDFTDFELIVVDDGSQDGATQRLPA 53
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BLAST of mRNA_M-pyrifera_M_contig9738.22432.1 vs. uniprot
Match: A0A3N1Y8J1_9GAMM (Glycosyl transferase family 2 n=2 Tax=Inmirania thermothiophila TaxID=1750597 RepID=A0A3N1Y8J1_9GAMM)

HSP 1 Score: 51.6 bits (122), Expect = 5.130e-6
Identity = 27/55 (49.09%), Postives = 37/55 (67.27%), Query Frame = 1 
Query:   16 RPTVTVLLPVKDGGDRLLDAVESVVACCCAGEAPPDWQLELLIIDDGSRDGAVDR 180
            RP V+V++PV+DGG  L  AVES++A           +LEL+++DDGSRDGA  R
Sbjct:    8 RPRVSVVMPVRDGGAALAAAVESILAQTLG-------ELELIVVDDGSRDGAPGR 55
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BLAST of mRNA_M-pyrifera_M_contig9738.22432.1 vs. uniprot
Match: A0A3M1DAQ5_9DELT (Glycosyltransferase n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A3M1DAQ5_9DELT)

HSP 1 Score: 50.1 bits (118), Expect = 1.880e-5
Identity = 27/53 (50.94%), Postives = 36/53 (67.92%), Query Frame = 1 
Query:   19 PTVTVLLPVKDGGDRLLDAVESVVACCCAGEAPPDWQLELLIIDDGSRDGAVD 177
            PTV+V++P+ D  + + DAVESVV      ++  DW  ELLI+DDGSRDG  D
Sbjct:   26 PTVSVIMPLYDSSETVCDAVESVVH-----QSFTDW--ELLIVDDGSRDGGAD 71
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BLAST of mRNA_M-pyrifera_M_contig9738.22432.1 vs. uniprot
Match: A0A2U2N4G9_9GAMM (Glycosyl transferase n=1 Tax=Spiribacter sp. E85 TaxID=2182432 RepID=A0A2U2N4G9_9GAMM)

HSP 1 Score: 48.9 bits (115), Expect = 4.620e-5
Identity = 27/52 (51.92%), Postives = 35/52 (67.31%), Query Frame = 1 
Query:   19 PTVTVLLPVKDGGDRLLDAVESVVACCCAGEAPPDWQLELLIIDDGSRDGAV 174
            P V+V+LPV+DGG  L  A  S++      +  PD  LELL++DDGSRDGAV
Sbjct:    5 PAVSVVLPVRDGGHCLATAAASIL-----DQTRPD--LELLVVDDGSRDGAV 49
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig9738.22432.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5K794_9PHAE1.510e-1470.18Glyco_trans_2-like domain-containing protein n=1 T... [more]
D7FI43_ECTSI9.770e-1468.42Bifunctional glycosyltransferase, family GT74 / fa... [more]
A0A317MWT9_9GAMM7.710e-750.00Glycosyl transferase family 2 n=2 Tax=Plasticicumu... [more]
A0A3N1Y8J1_9GAMM5.130e-649.09Glycosyl transferase family 2 n=2 Tax=Inmirania th... [more]
A0A3M1DAQ5_9DELT1.880e-550.94Glycosyltransferase n=1 Tax=Deltaproteobacteria ba... [more]
A0A2U2N4G9_9GAMM4.620e-551.92Glycosyl transferase n=1 Tax=Spiribacter sp. E85 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig9738contigM-pyrifera_M_contig9738:389..580 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.2
Seed ortholog evalue5.1e-11
Seed eggNOG ortholog2880.D7FI43
KEGG koko:K12245
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006464,GO:0006486,GO:0006807,GO:0008150,GO:0008152,GO:0008378,GO:0008417,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009987,GO:0016263,GO:0016740,GO:0016757,GO:0016758,GO:0019538,GO:0031127,GO:0034645,GO:0036065,GO:0036211,GO:0043170,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0048531,GO:0070085,GO:0071704,GO:0140096,GO:0140103,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.Glycosyl transferase family 2
EggNOG OGs2E273@1,2S9FF@2759
EC2.4.1.69
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01003
Exons1
Model size192
Cds size192
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816890.7730436-CDS-M-pyrifera_M_contig9738:388..5801622816890.7730436-CDS-M-pyrifera_M_contig9738:388..580Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9738 389..580 +
1692278239.2067118-CDS-M-pyrifera_M_contig9738:388..5801692278239.2067118-CDS-M-pyrifera_M_contig9738:388..580Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9738 389..580 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig9738.22432.1prot_M-pyrifera_M_contig9738.22432.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig9738 389..580 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig9738.22432.1

>prot_M-pyrifera_M_contig9738.22432.1 ID=prot_M-pyrifera_M_contig9738.22432.1|Name=mRNA_M-pyrifera_M_contig9738.22432.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=64bp
SQGQQRPTVTVLLPVKDGGDRLLDAVESVVACCCAGEAPPDWQLELLIID
DGSRDGAVDRATAA
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mRNA from alignment at M-pyrifera_M_contig9738:389..580+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig9738.22432.1 ID=mRNA_M-pyrifera_M_contig9738.22432.1|Name=mRNA_M-pyrifera_M_contig9738.22432.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=192bp|location=Sequence derived from alignment at M-pyrifera_M_contig9738:389..580+ (Macrocystis pyrifera P11B4 male)
TCCCAGGGCCAGCAAAGACCCACGGTGACGGTCCTGCTCCCCGTGAAGGA
TGGTGGGGATCGCCTGCTCGACGCCGTGGAGAGCGTGGTCGCCTGCTGCT
GCGCGGGGGAGGCGCCGCCGGACTGGCAGCTGGAACTCCTGATCATTGAC
GATGGCTCTCGGGATGGCGCGGTCGATAGAGCAACCGCGGCA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig9738:389..580+

>mRNA_M-pyrifera_M_contig9738.22432.1 ID=mRNA_M-pyrifera_M_contig9738.22432.1|Name=mRNA_M-pyrifera_M_contig9738.22432.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=384bp|location=Sequence derived from alignment at M-pyrifera_M_contig9738:389..580+ (Macrocystis pyrifera P11B4 male)
TCCCAGGGCCAGCAAAGACCCACGGTGACGGTCCTGCTCCCCGTGAAGGA
TGGTGGGGATCGCCTGCTCGACGCCGTGGAGAGCGTGGTCGCCTGCTGCT
GCGCGGGGGAGGCGCCGCCGGACTGGCAGCTGGAACTCCTGATCATTGAC
GATGGCTCTCGGGATGGCGCGGTCGATAGAGCAACCGCGGCATCCCAGGG
CCAGCAAAGACCCACGGTGACGGTCCTGCTCCCCGTGAAGGATGGTGGGG
ATCGCCTGCTCGACGCCGTGGAGAGCGTGGTCGCCTGCTGCTGCGCGGGG
GAGGCGCCGCCGGACTGGCAGCTGGAACTCCTGATCATTGACGATGGCTC
TCGGGATGGCGCGGTCGATAGAGCAACCGCGGCA
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