mRNA_M-pyrifera_M_contig97347.22425.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig97347.22425.1
Unique NamemRNA_M-pyrifera_M_contig97347.22425.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig97347.22425.1 vs. uniprot
Match: A0A517PRW8_9PLAN (Choloylglycine hydrolase n=5 Tax=Gimesia TaxID=1649453 RepID=A0A517PRW8_9PLAN)

HSP 1 Score: 237 bits (605), Expect = 2.330e-76
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 1
Query:    1 RASFYINACHQSADAREAVASVFSVMRNVSVPRGISTPDQPNISTTIWRTVSDQKNRVYFFENTASPSLVWIRLSQLDFSAGAPAQKLTLDGNPDLAGDQSHGFQPAEPFQFLVPTL 351
            RASFYINACHQSADAREAVASVFSVMRNVSVPRGISTPDQPNISTTIWRTVSDQKNRVYFFENTASPSLVWIRLSQLDFSAGAPAQKLTLDGNPDLAGDQSHGFQPAEPFQFLVPTL
Sbjct:  209 RASFYINACHQSADAREAVASVFSVMRNVSVPRGISTPDQPNISTTIWRTVSDQKNRVYFFENTASPSLVWIRLSQLDFSAGAPAQKLTLDGNPDLAGDQSHGFQPAEPFQFLVPTL 325          
BLAST of mRNA_M-pyrifera_M_contig97347.22425.1 vs. uniprot
Match: D2QXS5_PIRSD (Choloylglycine hydrolase n=1 Tax=Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB 4128) TaxID=530564 RepID=D2QXS5_PIRSD)

HSP 1 Score: 177 bits (448), Expect = 2.400e-52
Identity = 82/116 (70.69%), Postives = 101/116 (87.07%), Query Frame = 1
Query:    1 RASFYINACHQSADAREAVASVFSVMRNVSVPRGISTPDQPNISTTIWRTVSDQKNRVYFFENTASPSLVWIRLSQLDFSAGAPAQKLTLDGNPDLAGDQSHGFQPAEPFQFLVPT 348
            RASFYINACHQ+A+AREAVASVFSVMRN SVP GISTPDQPNI++TIWRTVSDQKN+VY+FE+T+SPS++W++L ++DFS  +  +KL L GNPDL GDQ+  F+PA PF+FL P 
Sbjct:  237 RASFYINACHQTANAREAVASVFSVMRNASVPLGISTPDQPNIASTIWRTVSDQKNKVYYFESTSSPSIIWVKLEKIDFSKTSGVRKLKLVGNPDLGGDQTANFEPAAPFKFLSPN 352          
BLAST of mRNA_M-pyrifera_M_contig97347.22425.1 vs. uniprot
Match: A6C6S2_9PLAN (CBAH domain-containing protein n=10 Tax=Planctomycetaceae TaxID=126 RepID=A6C6S2_9PLAN)

HSP 1 Score: 174 bits (441), Expect = 1.320e-51
Identity = 82/116 (70.69%), Postives = 101/116 (87.07%), Query Frame = 1
Query:    1 RASFYINACHQSADAREAVASVFSVMRNVSVPRGISTPDQPNISTTIWRTVSDQKNRVYFFENTASPSLVWIRLSQLDFSAGAPAQKLTLDGNPDLAGDQSHGFQPAEPFQFLVPT 348
            RASFYINAC Q+A+ REA ASVFSVMRNVSVPRGISTPDQPNIS+TIWRTVSDQK+++YF+E+TASP +VW+ L+Q+DFS G+  +KLTL GN +L+GDQ+  FQPAEP+ F+ P 
Sbjct:  209 RASFYINACTQTANPREAAASVFSVMRNVSVPRGISTPDQPNISSTIWRTVSDQKHKIYFYEDTASPGMVWVDLNQIDFSPGSGTRKLTLVGNYNLSGDQTDQFQPAEPYPFMAPA 324          
BLAST of mRNA_M-pyrifera_M_contig97347.22425.1 vs. uniprot
Match: A0A7J5V6S4_9DELT (Choloylglycine hydrolase n=1 Tax=Syntrophaceae bacterium TaxID=2052184 RepID=A0A7J5V6S4_9DELT)

HSP 1 Score: 173 bits (438), Expect = 7.390e-51
Identity = 85/115 (73.91%), Postives = 98/115 (85.22%), Query Frame = 1
Query:    1 RASFYINACHQSADAREAVASVFSVMRNVSVPRGISTPDQPNISTTIWRTVSDQKNRVYFFENTASPSLVWIRLSQLDFSAGAPAQKLTLDGNPDLAGDQSHGFQPAEPFQFLVP 345
            RASFYINA  QSAD REAVA+VFSVMRNVSVPRGISTP QPNIS+TIWRTV+DQKN+VYFFENTASPSLVW++L+Q+DF   +  +KLTL GNPDL GDQ+  F+ AE F+F  P
Sbjct:  236 RASFYINAATQSADLREAVAAVFSVMRNVSVPRGISTPTQPNISSTIWRTVADQKNKVYFFENTASPSLVWVQLNQIDFKPNSGVRKLTLHGNPDLGGDQTTHFKKAEAFKFPAP 350          
BLAST of mRNA_M-pyrifera_M_contig97347.22425.1 vs. uniprot
Match: A0A6M5Z1B9_9BACT (Choloylglycine hydrolase n=1 Tax=Frigoriglobus tundricola TaxID=2774151 RepID=A0A6M5Z1B9_9BACT)

HSP 1 Score: 173 bits (438), Expect = 8.350e-51
Identity = 81/115 (70.43%), Postives = 99/115 (86.09%), Query Frame = 1
Query:    1 RASFYINACHQSADAREAVASVFSVMRNVSVPRGISTPDQPNISTTIWRTVSDQKNRVYFFENTASPSLVWIRLSQLDFSAGAPAQKLTLDGNPDLAGDQSHGFQPAEPFQFLVP 345
            RASFYINAC QSAD REAVASVFSVMRNVSVPRGI T +QPNIS+T+WRTVSD KNR+Y+FE+TASPSL+W++L+++DF  G+  +KLTL G PD+ GDQ+  F+ AEPF+FL P
Sbjct:  237 RASFYINACKQSADPREAVASVFSVMRNVSVPRGIGTKEQPNISSTLWRTVSDHKNRIYYFEDTASPSLLWVKLNKIDFRDGSGVRKLTLAGKPDVGGDQTANFEKAEPFKFLAP 351          
BLAST of mRNA_M-pyrifera_M_contig97347.22425.1 vs. uniprot
Match: A0A350KFH8_9PLAN (Choloylglycine hydrolase (Fragment) n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A350KFH8_9PLAN)

HSP 1 Score: 163 bits (413), Expect = 4.160e-50
Identity = 77/110 (70.00%), Postives = 94/110 (85.45%), Query Frame = 1
Query:   19 NACHQSADAREAVASVFSVMRNVSVPRGISTPDQPNISTTIWRTVSDQKNRVYFFENTASPSLVWIRLSQLDFSAGAPAQKLTLDGNPDLAGDQSHGFQPAEPFQFLVPT 348
            NAC QSA+ REA ASVFSVMRNVSVPRGISTPDQPNIS+TIWRTVSDQK+++YF+E+TASP +VW+ L+Q+DFS G+  +KLTL GN  L+GDQ+  FQPAEP+ F+ P 
Sbjct:    1 NACAQSANPREAAASVFSVMRNVSVPRGISTPDQPNISSTIWRTVSDQKHKIYFYEDTASPGMVWVDLNQIDFSPGSGTRKLTLVGNYHLSGDQTDQFQPAEPYPFMAPA 110          
BLAST of mRNA_M-pyrifera_M_contig97347.22425.1 vs. uniprot
Match: UPI0019147E0F (linear amide C-N hydrolase n=1 Tax=Thiocystis minor TaxID=61597 RepID=UPI0019147E0F)

HSP 1 Score: 168 bits (425), Expect = 6.870e-49
Identity = 83/115 (72.17%), Postives = 95/115 (82.61%), Query Frame = 1
Query:    1 RASFYINACHQSADAREAVASVFSVMRNVSVPRGISTPDQPNISTTIWRTVSDQKNRVYFFENTASPSLVWIRLSQLDFSAGAPAQKLTLDGNPDLAGDQSHGFQPAEPFQFLVP 345
            RASFYINA  QSAD REAVA+VFSVMRNVSVPRGIST  QPN+S+TIWRTV+DQKN+VYFFE+T SPSLVW+RL Q+DF AG+  +KL L  NP L GDQ+  F+ AE FQFL P
Sbjct:  238 RASFYINATQQSADPREAVAAVFSVMRNVSVPRGISTAGQPNLSSTIWRTVADQKNKVYFFEDTLSPSLVWVRLDQIDFKAGSGVRKLALHDNPGLGGDQTAHFKKAEAFQFLAP 352          
BLAST of mRNA_M-pyrifera_M_contig97347.22425.1 vs. uniprot
Match: A0A7M2WXQ8_9BACT (Linear amide C-N hydrolase n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7M2WXQ8_9BACT)

HSP 1 Score: 165 bits (418), Expect = 8.040e-48
Identity = 79/115 (68.70%), Postives = 98/115 (85.22%), Query Frame = 1
Query:    1 RASFYINACHQSADAREAVASVFSVMRNVSVPRGISTPDQPNISTTIWRTVSDQKNRVYFFENTASPSLVWIRLSQLDFSAGAPAQKLTLDGNPDLAGDQSHGFQPAEPFQFLVP 345
            RASFYINAC+Q+ D REAVA+VFSV+RN SVPRGISTP+QPNI++TIWRTVSDQKNRVYF+ENTASPS VW++L+ +DF  G+ A+KL + G  DL GDQ+  F+ AEPF++L P
Sbjct:  237 RASFYINACNQTNDPREAVAAVFSVIRNCSVPRGISTPNQPNIASTIWRTVSDQKNRVYFYENTASPSPVWVKLAGIDFKEGSGARKLPMVGKLDLGGDQTANFEKAEPFKWLTP 351          
BLAST of mRNA_M-pyrifera_M_contig97347.22425.1 vs. uniprot
Match: UPI000305534D (linear amide C-N hydrolase n=1 Tax=Schlesneria paludicola TaxID=360056 RepID=UPI000305534D)

HSP 1 Score: 165 bits (417), Expect = 8.300e-48
Identity = 78/115 (67.83%), Postives = 95/115 (82.61%), Query Frame = 1
Query:    1 RASFYINACHQSADAREAVASVFSVMRNVSVPRGISTPDQPNISTTIWRTVSDQKNRVYFFENTASPSLVWIRLSQLDFSAGAPAQKLTLDGNPDLAGDQSHGFQPAEPFQFLVP 345
            RASFYINAC QS D REAVASVFSVMRNVSVPRGI T DQPNIS+T+WRTVSDQKNRVY+FE+T  PS++W++L ++DF+A A  +KLT+ G   + GDQ+  F+ AEPF+FL P
Sbjct:  226 RASFYINACRQSGDLREAVASVFSVMRNVSVPRGIGTADQPNISSTLWRTVSDQKNRVYYFEDTFMPSVLWVKLDEIDFNADAGTRKLTVTGKTPVGGDQTGNFKKAEPFKFLAP 340          
BLAST of mRNA_M-pyrifera_M_contig97347.22425.1 vs. uniprot
Match: A0A6P2D239_9BACT (CBAH domain-containing protein n=1 Tax=Gemmata massiliana TaxID=1210884 RepID=A0A6P2D239_9BACT)

HSP 1 Score: 164 bits (416), Expect = 1.560e-47
Identity = 82/115 (71.30%), Postives = 97/115 (84.35%), Query Frame = 1
Query:    1 RASFYINACHQSADAREAVASVFSVMRNVSVPRGISTPDQPNISTTIWRTVSDQKNRVYFFENTASPSLVWIRLSQLDFSAGAPAQKLTLDGNPDLAGDQSHGFQPAEPFQFLVP 345
            RASFYINAC QSAD REAVASVFSVMRNVSVPRGI T  QPNIS+TIWRTVSD KNRVY+FE+TASPSL+W++L+++DF  G+  +KLTL G  D+ GDQ+  F+ AEPF+FL P
Sbjct:  237 RASFYINACRQSADPREAVASVFSVMRNVSVPRGIGTKAQPNISSTIWRTVSDHKNRVYYFEDTASPSLLWVKLNKVDFKDGSGVRKLTLVGK-DVDGDQTANFEKAEPFKFLAP 350          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig97347.22425.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A517PRW8_9PLAN2.330e-76100.00Choloylglycine hydrolase n=5 Tax=Gimesia TaxID=164... [more]
D2QXS5_PIRSD2.400e-5270.69Choloylglycine hydrolase n=1 Tax=Pirellula staleyi... [more]
A6C6S2_9PLAN1.320e-5170.69CBAH domain-containing protein n=10 Tax=Planctomyc... [more]
A0A7J5V6S4_9DELT7.390e-5173.91Choloylglycine hydrolase n=1 Tax=Syntrophaceae bac... [more]
A0A6M5Z1B9_9BACT8.350e-5170.43Choloylglycine hydrolase n=1 Tax=Frigoriglobus tun... [more]
A0A350KFH8_9PLAN4.160e-5070.00Choloylglycine hydrolase (Fragment) n=1 Tax=Planct... [more]
UPI0019147E0F6.870e-4972.17linear amide C-N hydrolase n=1 Tax=Thiocystis mino... [more]
A0A7M2WXQ8_9BACT8.040e-4868.70Linear amide C-N hydrolase n=1 Tax=Phycisphaerales... [more]
UPI000305534D8.300e-4867.83linear amide C-N hydrolase n=1 Tax=Schlesneria pal... [more]
A0A6P2D239_9BACT1.560e-4771.30CBAH domain-containing protein n=1 Tax=Gemmata mas... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig97347contigM-pyrifera_M_contig97347:357..710 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score179.5
Seed ortholog evalue9.2e-43
Seed eggNOG ortholog530564.Psta_3338
Preferred namecbh
KEGG rclassRC00090,RC00096
KEGG koko:K01442
KEGG ReactionR02797,R03975,R03977,R04486,R04487,R05835
KEGG Pathwayko00120,ko00121,ko01100,map00120,map00121,map01100
Hectar predicted targeting categoryother localisation
EggNOG free text desc.COG3049 Penicillin V acylase and related
EggNOG OGs2IWWE@203682,COG3049@1,COG3049@2
EC3.5.1.24
COG Functional cat.M
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size354
Cds size354
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816890.386033-CDS-M-pyrifera_M_contig97347:356..7101622816890.386033-CDS-M-pyrifera_M_contig97347:356..710Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig97347 357..710 -
1692278238.9890056-CDS-M-pyrifera_M_contig97347:356..7101692278238.9890056-CDS-M-pyrifera_M_contig97347:356..710Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig97347 357..710 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig97347.22425.1prot_M-pyrifera_M_contig97347.22425.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig97347 357..710 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig97347.22425.1

>prot_M-pyrifera_M_contig97347.22425.1 ID=prot_M-pyrifera_M_contig97347.22425.1|Name=mRNA_M-pyrifera_M_contig97347.22425.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=118bp
RASFYINACHQSADAREAVASVFSVMRNVSVPRGISTPDQPNISTTIWRT
VSDQKNRVYFFENTASPSLVWIRLSQLDFSAGAPAQKLTLDGNPDLAGDQ
SHGFQPAEPFQFLVPTL*
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mRNA from alignment at M-pyrifera_M_contig97347:357..710-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig97347.22425.1 ID=mRNA_M-pyrifera_M_contig97347.22425.1|Name=mRNA_M-pyrifera_M_contig97347.22425.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=354bp|location=Sequence derived from alignment at M-pyrifera_M_contig97347:357..710- (Macrocystis pyrifera P11B4 male)
CGGGCATCCTTTTACATCAACGCCTGTCATCAGTCAGCCGATGCCCGCGA AGCGGTGGCCAGCGTTTTCAGCGTGATGCGGAACGTAAGCGTCCCCCGTG GTATCAGTACTCCCGATCAACCCAACATCTCCACAACCATCTGGCGTACC GTGAGCGATCAGAAGAACCGCGTCTACTTCTTCGAAAACACAGCCAGTCC CTCACTGGTCTGGATCCGATTGAGCCAGCTTGATTTCAGCGCAGGCGCCC CAGCCCAGAAACTGACCCTGGACGGCAACCCCGACCTGGCCGGCGACCAG TCCCACGGCTTCCAACCCGCAGAACCATTCCAGTTCCTGGTTCCCACGCT GTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig97347:357..710-

>mRNA_M-pyrifera_M_contig97347.22425.1 ID=mRNA_M-pyrifera_M_contig97347.22425.1|Name=mRNA_M-pyrifera_M_contig97347.22425.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=708bp|location=Sequence derived from alignment at M-pyrifera_M_contig97347:357..710- (Macrocystis pyrifera P11B4 male)
CGGGCATCCTTTTACATCAACGCCTGTCATCAGTCAGCCGATGCCCGCGA
AGCGGTGGCCAGCGTTTTCAGCGTGATGCGGAACGTAAGCGTCCCCCGTG
GTATCAGTACTCCCGATCAACCCAACATCTCCACAACCATCTGGCGTACC
GTGAGCGATCAGAAGAACCGCGTCTACTTCTTCGAAAACACAGCCAGTCC
CTCACTGGTCTGGATCCGATTGAGCCAGCTTGATTTCAGCGCAGGCGCCC
CAGCCCAGAAACTGACCCTGGACGGCAACCCCGACCTGGCCGGCGACCAG
TCCCACGGCTTCCAACCCGCAGAACCATTCCAGTTCCTGGTTCCCACGCT
GTGACGGGCATCCTTTTACATCAACGCCTGTCATCAGTCAGCCGATGCCC
GCGAAGCGGTGGCCAGCGTTTTCAGCGTGATGCGGAACGTAAGCGTCCCC
CGTGGTATCAGTACTCCCGATCAACCCAACATCTCCACAACCATCTGGCG
TACCGTGAGCGATCAGAAGAACCGCGTCTACTTCTTCGAAAACACAGCCA
GTCCCTCACTGGTCTGGATCCGATTGAGCCAGCTTGATTTCAGCGCAGGC
GCCCCAGCCCAGAAACTGACCCTGGACGGCAACCCCGACCTGGCCGGCGA
CCAGTCCCACGGCTTCCAACCCGCAGAACCATTCCAGTTCCTGGTTCCCA
CGCTGTGA
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