mRNA_M-pyrifera_M_contig9729.22404.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig9729.22404.1
Unique NamemRNA_M-pyrifera_M_contig9729.22404.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig9729.22404.1 vs. uniprot
Match: D8LSA9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSA9_ECTSI)

HSP 1 Score: 162 bits (409), Expect = 5.560e-45
Identity = 92/113 (81.42%), Postives = 101/113 (89.38%), Query Frame = 1
Query:    1 YEEAFEEVKTVSNIDDLDRLVAVFMKQEDEHFSLFNYIQTVNQETDQHLEKTEELEVTTISSIIAKYEEEQGVEESQRVAIIKNLHERAKAQKAASEIWAAKLEESQAVADSL 339
            YEEAFEE+KTVSNIDDLDRLVAVF+KQEDEHFSLFNYIQTVNQETDQHLEKTEELE       IAKYEEEQGVEE QRVAII++LHERA+AQ+AA+E WA K+E SQ+VAD L
Sbjct:  263 YEEAFEELKTVSNIDDLDRLVAVFIKQEDEHFSLFNYIQTVNQETDQHLEKTEELEAE-----IAKYEEEQGVEERQRVAIIRDLHERAEAQRAANEAWAEKVEGSQSVADGL 370          
BLAST of mRNA_M-pyrifera_M_contig9729.22404.1 vs. uniprot
Match: A0A7S1XQU7_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XQU7_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 4.400e-15
Identity = 46/90 (51.11%), Postives = 64/90 (71.11%), Query Frame = 1
Query:    1 YEEAFEEVKTVSNIDDLDRLVAVFMKQEDEHFSLFNYIQTVNQETDQHLE---KTEELEVTTISSIIAKYEEEQGVEESQRVAIIKNLHE 261
            YEE+F+E+K VS IDD++RLV +F+K E+E FSLFNYIQ VNQ+ ++ LE   KTE+         I KY+++QG EE QR  +IK+L +
Sbjct:  263 YEESFQELKRVSGIDDIERLVDIFIKNEEETFSLFNYIQQVNQDIEKELEVRAKTEQQ--------IKKYQDDQGEEEQQRAEVIKDLQD 344          
BLAST of mRNA_M-pyrifera_M_contig9729.22404.1 vs. uniprot
Match: A0A061RM54_9CHLO (Flagellar outer dynein arm-docking complex protein 1 (Fragment) n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RM54_9CHLO)

HSP 1 Score: 64.3 bits (155), Expect = 2.890e-10
Identity = 43/105 (40.95%), Postives = 66/105 (62.86%), Query Frame = 1
Query:    1 YEEAFEEVKTVSNIDDLDRLVAVFMKQEDEHFSLFNYIQTVNQETDQHLEKTEELEVTTISSIIAKYEEEQGVEESQRVAIIKNLHERAKAQKAASEIWAAKLEE 315
            Y EAFE+++T + I D+D LV  F+  ED++FSLFNYI  VNQE    +EK EE ++TTI   I  Y+    V ++ R   +K++ ER +  +A ++++  K EE
Sbjct:   41 YGEAFEQIQTATGIQDIDELVTNFVDAEDKNFSLFNYINEVNQE----IEKLEE-QITTIRGEIEAYKAGGVVSDTMRKKELKDMEERLQKMEAKADLYEKKHEE 140          
BLAST of mRNA_M-pyrifera_M_contig9729.22404.1 vs. uniprot
Match: L1JYW5_GUITC (Uncharacterized protein n=3 Tax=Guillardia theta TaxID=55529 RepID=L1JYW5_GUITC)

HSP 1 Score: 65.1 bits (157), Expect = 5.860e-10
Identity = 40/102 (39.22%), Postives = 65/102 (63.73%), Query Frame = 1
Query:    1 YEEAFEEVKTVSNIDDLDRLVAVFMKQEDEHFSLFNYIQTVNQETDQHLEKTEELEVTTISSIIAKYEEEQGVEESQRVAIIKNLHERAKAQKAASEIWAAK 306
            +EEAF E+K  + ID++D LV  F+  ED++FSLFNY+  +N E    +EK EE ++  I + I KY+ + G  + QR  ++K+L +R  + +A +E + AK
Sbjct:  218 FEEAFNEIKNATGIDNIDELVQTFIDAEDQNFSLFNYVNELNNE----IEKLEE-QIADIKTEIEKYKGQGGQNDRQRKKLLKDLEDRLASTEARAEQYEAK 314          
BLAST of mRNA_M-pyrifera_M_contig9729.22404.1 vs. uniprot
Match: A0A7S0HB92_9CRYP (Hypothetical protein (Fragment) n=2 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0HB92_9CRYP)

HSP 1 Score: 63.5 bits (153), Expect = 1.940e-9
Identity = 39/102 (38.24%), Postives = 64/102 (62.75%), Query Frame = 1
Query:    1 YEEAFEEVKTVSNIDDLDRLVAVFMKQEDEHFSLFNYIQTVNQETDQHLEKTEELEVTTISSIIAKYEEEQGVEESQRVAIIKNLHERAKAQKAASEIWAAK 306
            +EEAF+++K  + ID++D LV  F+  ED++FSLFNY+  +N E    +EK EE  +  I + I KY  + G  + QR  ++K+L +R  + +A +E + AK
Sbjct:  282 FEEAFQQIKAATGIDNIDELVQTFIDAEDQNFSLFNYVNELNNE----IEKLEE-HIADIKTDIEKYRGQGGQNDRQRKKLLKDLEDRLASTEAKAEQYEAK 378          
BLAST of mRNA_M-pyrifera_M_contig9729.22404.1 vs. uniprot
Match: L1IYE6_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IYE6_GUITC)

HSP 1 Score: 63.5 bits (153), Expect = 2.050e-9
Identity = 39/102 (38.24%), Postives = 64/102 (62.75%), Query Frame = 1
Query:    1 YEEAFEEVKTVSNIDDLDRLVAVFMKQEDEHFSLFNYIQTVNQETDQHLEKTEELEVTTISSIIAKYEEEQGVEESQRVAIIKNLHERAKAQKAASEIWAAK 306
            +EEAF+++K  + ID++D LV  F+  ED++FSLFNY+  +N E    +EK EE  +  I + I KY  + G  + QR  ++K+L +R  + +A +E + AK
Sbjct:  255 FEEAFQQIKAATGIDNIDELVQTFIDAEDQNFSLFNYVNELNNE----IEKLEE-HIADIKTDIEKYRGQGGQNDRQRKKLLKDLEDRLASTEAKAEQYEAK 351          
BLAST of mRNA_M-pyrifera_M_contig9729.22404.1 vs. uniprot
Match: F0YGN1_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YGN1_AURAN)

HSP 1 Score: 62.4 bits (150), Expect = 5.270e-9
Identity = 38/85 (44.71%), Postives = 52/85 (61.18%), Query Frame = 1
Query:    1 YEEAFEEVKTVSNIDDLDRLVAVFMKQEDEHFSLFNYIQTVNQETDQHLEKTEELEVTTISSIIAKYEEEQGVEESQRVAIIKNL 255
            Y  +F+E+K VS IDDL  +V  ++K E+E FSLFNY+Q  NQETD  LE+      T +   I  YEE+   EE+QR   + +L
Sbjct:  257 YRTSFDELKRVSGIDDLKEIVHKYVKSEEETFSLFNYVQAQNQETDWTLERH-----TRLEEEIKSYEEKLSDEEAQRAEAMADL 336          
BLAST of mRNA_M-pyrifera_M_contig9729.22404.1 vs. uniprot
Match: F0Y5D3_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y5D3_AURAN)

HSP 1 Score: 62.4 bits (150), Expect = 5.320e-9
Identity = 45/113 (39.82%), Postives = 70/113 (61.95%), Query Frame = 1
Query:    1 YEEAFEEVKTVSNIDDLDRLVAVFMKQEDEHFSLFNYIQTVNQETDQHLEKTEELEVTTISSIIAKYEEEQGVEESQRVAIIKNLHERAKAQKAASEIWAAKLEESQAVADSL 339
            +EEAF  +K  + I  +D LV +F+K ED++FSLFNY   VN++T++ +EK EE +V  +    AKY +E G + +Q   I+ +L  +    +A +  + +K EE QAV DSL
Sbjct:  313 FEEAFNRIKAATGISAIDELVRMFIKNEDQNFSLFNY---VNEQTNE-IEKLEE-QVQALQDEQAKYTQESGDDVNQHKLILLDLESKLATTEANASKYESKCEEYQAVIDSL 420          
BLAST of mRNA_M-pyrifera_M_contig9729.22404.1 vs. uniprot
Match: A0A485L6H0_9STRA (Aste57867_16889 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L6H0_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 7.290e-9
Identity = 41/107 (38.32%), Postives = 69/107 (64.49%), Query Frame = 1
Query:    1 YEEAFEEVKTVSNIDDLDRLVAVFMKQEDEHFSLFNYIQTVNQETDQHLEKTEELEVTTISSIIAKYEEEQGVEESQRVAIIKNLHERAKAQKAASEIWAAKLEESQ 321
            YEE F ++K  + I+DL+ LV  F+K ED++FSLFNY   VN++T++ +EK ++ ++ T+ +  AKY EE G +  Q   ++K L  R  A + A+E + +K  ++Q
Sbjct:  308 YEEVFTKIKAATGINDLEELVDTFIKNEDQNFSLFNY---VNEQTNE-IEKLQD-QIETLKTEEAKYSEETGDDAHQHKQLLKELESRLTATEHAAEKYESKYNDAQ 409          
BLAST of mRNA_M-pyrifera_M_contig9729.22404.1 vs. uniprot
Match: A0A7S0QU63_9CRYP (Hypothetical protein n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0QU63_9CRYP)

HSP 1 Score: 61.6 bits (148), Expect = 9.830e-9
Identity = 39/102 (38.24%), Postives = 65/102 (63.73%), Query Frame = 1
Query:    1 YEEAFEEVKTVSNIDDLDRLVAVFMKQEDEHFSLFNYIQTVNQETDQHLEKTEELEVTTISSIIAKYEEEQGVEESQRVAIIKNLHERAKAQKAASEIWAAK 306
            +EEAF ++K  + ID++D LV  F+  ED++FSLFNY+  +N E    +EK EE ++  I + I KY+ + G  + QR  ++K+L +R  + +A +E + AK
Sbjct:  291 FEEAFLQIKGATGIDNIDELVQTFIDAEDQNFSLFNYVNELNNE----VEKLEE-QIADIKAEIEKYKGQGGQNDRQRKKLLKDLEDRLASTEARAEQYEAK 387          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig9729.22404.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LSA9_ECTSI5.560e-4581.42Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S1XQU7_9STRA4.400e-1551.11Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A061RM54_9CHLO2.890e-1040.95Flagellar outer dynein arm-docking complex protein... [more]
L1JYW5_GUITC5.860e-1039.22Uncharacterized protein n=3 Tax=Guillardia theta T... [more]
A0A7S0HB92_9CRYP1.940e-938.24Hypothetical protein (Fragment) n=2 Tax=Hanusia ph... [more]
L1IYE6_GUITC2.050e-938.24Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
F0YGN1_AURAN5.270e-944.71Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
F0Y5D3_AURAN5.320e-939.82Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A485L6H0_9STRA7.290e-938.32Aste57867_16889 protein n=1 Tax=Aphanomyces stella... [more]
A0A7S0QU63_9CRYP9.830e-938.24Hypothetical protein n=1 Tax=Cryptomonas curvata T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig9729contigM-pyrifera_M_contig9729:2445..3057 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score168.3
Seed ortholog evalue2e-39
Seed eggNOG ortholog2880.D8LSA9
Hectar predicted targeting categoryother localisation
EggNOG OGs2BMWJ@1,2S1MY@2759
Ec32 ortholog descriptionODA1/DCC2 family
Ec32 orthologEc-12_004200.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size339
Cds size339
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816889.3762498-CDS-M-pyrifera_M_contig9729:2444..25941622816889.3762498-CDS-M-pyrifera_M_contig9729:2444..2594Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9729 2445..2594 -
1692278238.3829327-CDS-M-pyrifera_M_contig9729:2444..25941692278238.3829327-CDS-M-pyrifera_M_contig9729:2444..2594Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9729 2445..2594 -
1622816889.388128-CDS-M-pyrifera_M_contig9729:2868..30571622816889.388128-CDS-M-pyrifera_M_contig9729:2868..3057Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9729 2869..3057 -
1692278238.4002156-CDS-M-pyrifera_M_contig9729:2868..30571692278238.4002156-CDS-M-pyrifera_M_contig9729:2868..3057Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9729 2869..3057 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig9729.22404.1prot_M-pyrifera_M_contig9729.22404.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig9729 2445..3057 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig9729.22404.1

>prot_M-pyrifera_M_contig9729.22404.1 ID=prot_M-pyrifera_M_contig9729.22404.1|Name=mRNA_M-pyrifera_M_contig9729.22404.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=113bp
YEEAFEEVKTVSNIDDLDRLVAVFMKQEDEHFSLFNYIQTVNQETDQHLE
KTEELEVTTISSIIAKYEEEQGVEESQRVAIIKNLHERAKAQKAASEIWA
AKLEESQAVADSL
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mRNA from alignment at M-pyrifera_M_contig9729:2445..3057-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig9729.22404.1 ID=mRNA_M-pyrifera_M_contig9729.22404.1|Name=mRNA_M-pyrifera_M_contig9729.22404.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=613bp|location=Sequence derived from alignment at M-pyrifera_M_contig9729:2445..3057- (Macrocystis pyrifera P11B4 male)
TACGAGGAAGCGTTCGAGGAGGTTAAAACGGTGTCCAACATCGACGACCT GGACCGACTCGTGGCGGTGTTCATGAAGCAGGAGGACGAACACTTTTCGC TTTTCAACTACATTCAGACCGTTAACCAGGAGACTGACCAGCACCTGGAG AAGACGGAGGAACTAGAGGTGACGACTATAAGTAGTATAGTAGACAAGCG TGATCAGATGCGTGTATACGGGTTCTGTCTACGCCTTGTGACACGTCGCT ATTTGTCGCGAGGTAACATGGCGATAAGACCAAACGTAAGACCCTGTTCG AATGAAGAATGACAGAGGTTTCACCGCGAATGCCATCGACCAAAGCCGAA AGACCCAAGGATGATCCTCTGGGTAAAAACAAAGCTAACACACTTACCCT GTCATCGTTTGTATCCCCATTGCCGGCTTTTGTGCTTCTGCATGGCAAAA TTGACAGGCGGAGATAGCAAAATACGAAGAGGAGCAAGGCGTAGAAGAAA GCCAGCGGGTAGCCATAATAAAAAACTTGCACGAGAGGGCCAAAGCTCAG AAAGCAGCCAGCGAGATCTGGGCGGCGAAACTGGAAGAATCACAAGCCGT AGCGGACAGTCTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig9729:2445..3057-

>mRNA_M-pyrifera_M_contig9729.22404.1 ID=mRNA_M-pyrifera_M_contig9729.22404.1|Name=mRNA_M-pyrifera_M_contig9729.22404.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=678bp|location=Sequence derived from alignment at M-pyrifera_M_contig9729:2445..3057- (Macrocystis pyrifera P11B4 male)
TACGAGGAAGCGTTCGAGGAGGTTAAAACGGTGTCCAACATCGACGACCT
GGACCGACTCGTGGCGGTGTTCATGAAGCAGGAGGACGAACACTTTTCGC
TTTTCAACTACATTCAGACCGTTAACCAGGAGACTGACCAGCACCTGGAG
AAGACGGAGGAACTAGAGGTGACGACTATAAGTAGTATATACGAGGAAGC
GTTCGAGGAGGTTAAAACGGTGTCCAACATCGACGACCTGGACCGACTCG
TGGCGGTGTTCATGAAGCAGGAGGACGAACACTTTTCGCTTTTCAACTAC
ATTCAGACCGTTAACCAGGAGACTGACCAGCACCTGGAGAAGACGGAGGA
ACTAGAGGTGACGACTATAAGTAGTATAATAGCAAAATACGAAGAGGAGC
AAGGCGTAGAAGAAAGCCAGCGGGTAGCCATAATAAAAAACTTGCACGAG
AGGGCCAAAGCTCAGAAAGCAGCCAGCGAGATCTGGGCGGCGAAACTGGA
AGAATCACAAGCCGTAGCGGACAGTCTCATAGCAAAATACGAAGAGGAGC
AAGGCGTAGAAGAAAGCCAGCGGGTAGCCATAATAAAAAACTTGCACGAG
AGGGCCAAAGCTCAGAAAGCAGCCAGCGAGATCTGGGCGGCGAAACTGGA
AGAATCACAAGCCGTAGCGGACAGTCTC
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