mRNA_M-pyrifera_M_contig9726.22400.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig9726.22400.1
Unique NamemRNA_M-pyrifera_M_contig9726.22400.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig9726.22400.1 vs. uniprot
Match: D7FSX1_ECTSI (TPR Domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSX1_ECTSI)

HSP 1 Score: 159 bits (402), Expect = 1.300e-44
Identity = 79/113 (69.91%), Postives = 88/113 (77.88%), Query Frame = 1
Query:    1 LASGVRRNLRRRYNFVCFTDDVLALDGMTRVVAKPIG-ARCEGWKGWWHKAFLFSREAGLKGRVLYFDLDTVIVGPLDDIAGYVEPFAALSVAEMANEHRSEGLNSSLMSWDA 336
            LA+GVRRNLRR + FVC+TDDV AL  M  VVA+P+G ARC  W+GWWHKAFLFSRE  L GRV+Y DLDTVI G LD+IAGY  PFA LS   MANE R  GLNSS+MSWDA
Sbjct:  243 LAAGVRRNLRRDHRFVCYTDDVEALSEMPGVVARPLGSARCGEWRGWWHKAFLFSRETTLAGRVVYIDLDTVIAGSLDEIAGYAGPFAVLSAEGMANERRPGGLNSSVMSWDA 355          
BLAST of mRNA_M-pyrifera_M_contig9726.22400.1 vs. uniprot
Match: A0A6H5J8Y9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8Y9_9PHAE)

HSP 1 Score: 153 bits (386), Expect = 3.060e-43
Identity = 78/115 (67.83%), Postives = 86/115 (74.78%), Query Frame = 1
Query:    1 LASGVRRNLRRRYNFVCFTDDVLALDGMTRVVAKPIGARCEG-WKGWWHKAFLFSREAGLKGRVLYFDLDTVIVGPLDDIAGYVEPFAALSVAEMANEHRSEGLNSSLMSWDADS 342
            LA+GVRRNL R + FVCFTDDV AL  M  VVA+P+G+   G W+GWWHKAFLFSRE  L GRV+Y DLDTVI   LDDIAGY  PFA LS   MANE R  GLNSS+MSWDA S
Sbjct:  208 LAAGVRRNLLRDHRFVCFTDDVEALSEMPGVVARPLGSARRGEWRGWWHKAFLFSRETTLAGRVMYIDLDTVIADSLDDIAGYAGPFAVLSAEGMANERRPGGLNSSVMSWDAGS 322          
BLAST of mRNA_M-pyrifera_M_contig9726.22400.1 vs. uniprot
Match: A0A0M0K5E4_9EUKA (Tpr domain containing protein (Fragment) n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0K5E4_9EUKA)

HSP 1 Score: 102 bits (254), Expect = 5.280e-23
Identity = 61/118 (51.69%), Postives = 73/118 (61.86%), Query Frame = 1
Query:    1 LASGVRRNLRRRY---NFVCFTDDVLALDGMTRVVAKPIGARCEGWKGWWHKAFLFSREAGLKGRVLYFDLDTVIVGP--LDDIAGYVEPFAALSVAEM-ANEHRSEGLNSSLMSWDA 336
            L  GVRR L       +FVCFTDDV  LD    + A+P+  R E WKGWWHKA LFSR AGL+GRVLY DLDTVI+    +  +A Y  PFA LS     A E   +G N+S+M W+A
Sbjct:  365 LCRGVRRALGAAVVGAHFVCFTDDVDGLDA--DIEARPLPLRREEWKGWWHKAHLFSRAAGLEGRVLYIDLDTVIIDTYCMASLAAYDGPFATLSSRGFDAEEGYVDGYNTSVMVWEA 480          
BLAST of mRNA_M-pyrifera_M_contig9726.22400.1 vs. uniprot
Match: A0A7S2SGH1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SGH1_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 2.710e-22
Identity = 55/114 (48.25%), Postives = 68/114 (59.65%), Query Frame = 1
Query:    1 LASGVRRNLRRRYNFVCFTDDVLALDGMTRVVAKPIGARCEGWKGWWHKAFLFSREA----GLKGRVLYFDLDTVIVGPLDDIAGYVEPFAALSVAEMANEHRSEGLNSSLMSW 330
            LA+G+R +L   Y   CFTDD  +L    R +  P        +GWW KAFLFS EA     L  RVLY DLDT++VGPL+++AG V PF  L    MANE R+ G NSS+M W
Sbjct:   86 LAAGLRGHLSVPYRVTCFTDDSSSLAEDVRGILFPEMPL----QGWWLKAFLFSSEACSQLQLGSRVLYIDLDTIVVGPLEELAGLVVPFGTLGTDGMANERRTGGYNSSVMVW 195          
BLAST of mRNA_M-pyrifera_M_contig9726.22400.1 vs. uniprot
Match: A0A7S2N911_9DINO (Hypothetical protein (Fragment) n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2N911_9DINO)

HSP 1 Score: 97.4 bits (241), Expect = 8.000e-22
Identity = 57/114 (50.00%), Postives = 72/114 (63.16%), Query Frame = 1
Query:    1 LASGVRRNLRR-RYNFVCFTDDVLALDGMTRVVAKPIGARCEGWKGWWHKAFLFSREAGLKG-RVLYFDLDTVIVGPLDDIAGYVEPFAALSVAEMANEHRSEGLNSSLMSWDA 336
            L  GVRR+L     +F+CFTDD+  LD        P     +G   WW KA+LFS+EAGL G RVLY DLD V+VG LDD+AG+  PFA L   ++A E  S G NSS+M+W+A
Sbjct:  198 LFEGVRRHLPTYEGSFICFTDDLEGLDERIEKRLLP-----DGLPLWWGKAYLFSQEAGLDGLRVLYLDLDQVLVGSLDDLAGFRGPFAVLGTDDIACELASGGYNSSVMAWEA 306          
BLAST of mRNA_M-pyrifera_M_contig9726.22400.1 vs. uniprot
Match: A0A1V9Z1Y7_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z1Y7_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 8.220e-21
Identity = 51/112 (45.54%), Postives = 71/112 (63.39%), Query Frame = 1
Query:    1 LASGVRRNLRRRYNFVCFTDDVLALDGMTRVVAKPIGARCEGWKGWWHKAFLFSREAGLKGRVLYFDLDTVIVGPLDDIAGYVEPFAALSVAEMANEHRSEGLNSSLMSWDA 336
            L SGVRR+LRR + F CFT+    L   + V+  P+    EG+ GWW+KA LF+ ++ + GRV+Y DLDTV+VG L  +  Y   F  L+  +M NE R+ G+NSS+M W A
Sbjct:  193 LLSGVRRHLRRDFQFHCFTEAPHGL--ASDVLVHPLR---EGFTGWWNKAQLFAADSPVHGRVVYIDLDTVVVGDLTALFSYTGNFGTLATDDMHNERRAGGINSSVMIWTA 299          
BLAST of mRNA_M-pyrifera_M_contig9726.22400.1 vs. uniprot
Match: A0A8J6C5Z4_DIALT (Uncharacterized protein n=3 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6C5Z4_DIALT)

HSP 1 Score: 95.9 bits (237), Expect = 8.970e-21
Identity = 54/115 (46.96%), Postives = 71/115 (61.74%), Query Frame = 1
Query:    1 LASGVRRNLRRR--YNFVCFTDDVLALDGMTRVVAKPIGARCEGWKGWWHKAFLFSREAGLKGRVLYFDLDTVIVGPLDDIAGYVEPFAALSVAEMANEH-RSEGLNSSLMSWDA 336
            L + VR ++     ++FVC+TDD + LD    V  +P+     GW GWW KA +F   A   GRV+YFDLDT+I+GPLD +     PFA LS AE A E   +EG+NSS+M WDA
Sbjct:  313 LRAAVRAHMAAELAFDFVCYTDDPVGLDA--EVQTRPLDGM-PGWDGWWLKAAIFGPAAISAGRVVYFDLDTIIIGPLDALLLCNAPFATLSAAEWACERDNAEGVNSSIMLWDA 424          
BLAST of mRNA_M-pyrifera_M_contig9726.22400.1 vs. uniprot
Match: A0A024TX51_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TX51_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 1.650e-20
Identity = 54/116 (46.55%), Postives = 68/116 (58.62%), Query Frame = 1
Query:    1 LASGVRRNLRR-RYNFVCFTDDVLALDGMTRVVAKPIGAR--CEGWKGWWHKAFLFSREAGLKGRVLYFDLDTVIVGPLDDIAGYVEPFAALSVAEMANEHRSEGLNSSLMSWDAD 339
            L  GV R+L+  RY F C TD+ + L       A  I  R    GW GWW+KA +FS   G  GR+LY DLD+V+VG LDD+A Y   F  L   +M NE R  G+NSS+M+W AD
Sbjct:  198 LHRGVARHLKSVRYTFCCLTDNAVGL-------APEIDVRLLAPGWVGWWNKAQVFSPAFGWTGRMLYLDLDSVLVGSLDDLALYSGWFGTLKTDDMENERRIGGINSSVMAWHAD 306          
BLAST of mRNA_M-pyrifera_M_contig9726.22400.1 vs. uniprot
Match: W4GFR7_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GFR7_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 2.380e-20
Identity = 54/116 (46.55%), Postives = 67/116 (57.76%), Query Frame = 1
Query:    1 LASGVRRNLRR-RYNFVCFTDDVLALDGMTRVVAKPIGARCE--GWKGWWHKAFLFSREAGLKGRVLYFDLDTVIVGPLDDIAGYVEPFAALSVAEMANEHRSEGLNSSLMSWDAD 339
            L  GV R+L+   + F C TDD          +A+ I  R    GW GWW+KA +FS   G +GR+LYFDLDTV VG LDD+A Y   F  L    M NE R  G+NSS+M+W AD
Sbjct:  203 LYRGVARHLKSVPFTFCCLTDDPAG-------IAQEINVRQLELGWVGWWNKAQVFSPSFGWRGRMLYFDLDTVFVGSLDDLAMYAGWFGTLETDAMENERRVGGINSSVMTWHAD 311          
BLAST of mRNA_M-pyrifera_M_contig9726.22400.1 vs. uniprot
Match: F0Y6H3_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y6H3_AURAN)

HSP 1 Score: 92.0 bits (227), Expect = 1.990e-19
Identity = 57/113 (50.44%), Postives = 71/113 (62.83%), Query Frame = 1
Query:    1 LASGVRRNLRRRYNFVCFTDDVLALDGMTRVVAKPIGARCEGWKGWWHKAFLFSREAGLKGRVLYFDLDTVIVGPLDDIAGYV-EPFAALSVAEMANEHRSEGLNSSLMSWDA 336
            LA  VRR+L      VC+TDD   LD    V A+P+ A     + WW KA+LFS +AGL+GRVLY DLDTV+ GPL  +A Y  +  A L   ++ANE+RS G NSSLM W A
Sbjct:  219 LARAVRRHLAVGA-VVCYTDDPSGLDADV-VEARPLPAGT-ALEAWWLKAYLFSADAGLEGRVLYVDLDTVVCGPLAGLAAYGGDSVALLGTDDLANENRSGGYNSSLMVWTA 328          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig9726.22400.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FSX1_ECTSI1.300e-4469.91TPR Domain containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5J8Y9_9PHAE3.060e-4367.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A0M0K5E4_9EUKA5.280e-2351.69Tpr domain containing protein (Fragment) n=1 Tax=C... [more]
A0A7S2SGH1_9STRA2.710e-2248.25Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S2N911_9DINO8.000e-2250.00Hypothetical protein (Fragment) n=1 Tax=Brandtodin... [more]
A0A1V9Z1Y7_9STRA8.220e-2145.54Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A8J6C5Z4_DIALT8.970e-2146.96Uncharacterized protein n=3 Tax=Diacronema lutheri... [more]
A0A024TX51_9STRA1.650e-2046.55Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
W4GFR7_9STRA2.380e-2046.55Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
F0Y6H3_AURAN1.990e-1950.44Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig9726contigM-pyrifera_M_contig9726:8940..10439 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score162.5
Seed ortholog evalue1.1e-37
Seed eggNOG ortholog2880.D7FSX1
Hectar predicted targeting categorymitochondrion
EggNOG OGs2CN00@1,2QT19@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size342
Cds size342
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816889.0782592-CDS-M-pyrifera_M_contig9726:8939..91031622816889.0782592-CDS-M-pyrifera_M_contig9726:8939..9103Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9726 8940..9103 +
1692278238.158867-CDS-M-pyrifera_M_contig9726:8939..91031692278238.158867-CDS-M-pyrifera_M_contig9726:8939..9103Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9726 8940..9103 +
1622816889.089944-CDS-M-pyrifera_M_contig9726:10261..104391622816889.089944-CDS-M-pyrifera_M_contig9726:10261..10439Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9726 10262..10439 +
1692278238.1760473-CDS-M-pyrifera_M_contig9726:10261..104391692278238.1760473-CDS-M-pyrifera_M_contig9726:10261..10439Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9726 10262..10439 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig9726.22400.1prot_M-pyrifera_M_contig9726.22400.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig9726 8940..10439 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig9726.22400.1

>prot_M-pyrifera_M_contig9726.22400.1 ID=prot_M-pyrifera_M_contig9726.22400.1|Name=mRNA_M-pyrifera_M_contig9726.22400.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=114bp
LASGVRRNLRRRYNFVCFTDDVLALDGMTRVVAKPIGARCEGWKGWWHKA
FLFSREAGLKGRVLYFDLDTVIVGPLDDIAGYVEPFAALSVAEMANEHRS
EGLNSSLMSWDADS
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mRNA from alignment at M-pyrifera_M_contig9726:8940..10439+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig9726.22400.1 ID=mRNA_M-pyrifera_M_contig9726.22400.1|Name=mRNA_M-pyrifera_M_contig9726.22400.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1500bp|location=Sequence derived from alignment at M-pyrifera_M_contig9726:8940..10439+ (Macrocystis pyrifera P11B4 male)
CTGGCCTCGGGCGTTCGACGGAACTTGCGCAGGCGTTACAATTTCGTCTG CTTTACGGACGATGTACTAGCCCTCGACGGAATGACTAGGGTCGTTGCGA AACCTATAGGAGCACGCTGCGAGGGTTGGAAAGGCTGGTGGCATAAGGCG TTCCTCTTCTCCAGGTGACAAGGGATGAGGGGCGGGGCGGTGGCGGTGCG TGTTGAGACTGGCTGCTACCACCACGGCCGTTGACGTGGTCCAGTCCGAG TGTTTCTCGAAGGCTGCCGTCAGGAGTAAAGAGCCTTGAGTTTGCGCAGG GATTCGATAGTGTTTCGCTATTGATACTTTTCTCAACAACGGTAAGGGTG CTAAAGTTGAGGGTTGTATTTTCGGAAGGTTCTCGACCAGATCTTTCCGA CAACACCTTGTTCGATATTGGAAACCTTTCCGTTCTGTAAAAATCGAGCT CTGAAAAACGATCGCATCCCTGTGCGAACTCAACGCTCTTCACTCCTTAC TGTAGCTGTCTCTCCCACTGCCGTACCCTCCTTTTGTACCACCAGCGTCT ACCGGATCGCGAATTTTGTACGTCTGCGGCGATGGTCTTGCGGACCGCAT CGTCCGACATTGTCTACGCGGGGAATACCTCCCGAACGATTGGGGGTCAG CGCAGTGGCGTTACACAGAATAACAGTATTTGCTTCCAATACCCGTCACC TCCAACACGCACCGCCGTCAGTTGTCCGCGCACCGCCAGCCACACAACCT GGGTGCTCTTGCTGTTGCTCGTTCTCTCGCTCTTGCTCCTGCTATTGCGT CGTCGTGGTCATGTTGCAAGCAAATCAACACCCCGGCAGTAAGCGCGGCG AGATTACCACCAGATACATACTGTCGATCAGGAAAGCACGTGCGCAGCGG CTCGTAGCCCGGCGAAACACCGCTTCCGTAAGATGTATTCCCATGCGCGC AGCTGTAAAGGGCTTGGGACAGGCGGCGTACCATTTCGACGGCATCAGAG CGTATCTCTGGTTGCTGTGGGTTGACGTGGCGTCCTGCTCGTCTCTCACG TCGGACCGAAATGGCCGACCCATAGCACCGCGATATCTTGCTGGCTTACA TGCCTAATCGCCACTCCGAGCCCACGCCCCGCAGCATCACACTCAAGTAT GACTCCGAACGATCACACGGGAGCGTTACACCGATTTACGATGGCGACCA AAAACCCCGAAGTATATCTCCGAAACATCACCACCCCGACTTCAAACGGT GAATGTTCGTTCCTGGTTTTCACACCGAATCGCCTTTCTCCGCTCGTGCG CACCAAATACCCACAAACACAGGGAGGCCGGCCTTAAGGGGCGTGTGCTA TACTTTGACCTGGACACGGTCATCGTGGGTCCCTTGGACGATATCGCCGG TTACGTCGAGCCGTTTGCAGCCCTCTCTGTCGCCGAAATGGCCAATGAAC ACCGCTCTGAGGGATTGAACAGCAGCCTCATGTCATGGGATGCGGACTCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig9726:8940..10439+

>mRNA_M-pyrifera_M_contig9726.22400.1 ID=mRNA_M-pyrifera_M_contig9726.22400.1|Name=mRNA_M-pyrifera_M_contig9726.22400.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=684bp|location=Sequence derived from alignment at M-pyrifera_M_contig9726:8940..10439+ (Macrocystis pyrifera P11B4 male)
CTGGCCTCGGGCGTTCGACGGAACTTGCGCAGGCGTTACAATTTCGTCTG
CTTTACGGACGATGTACTAGCCCTCGACGGAATGACTAGGGTCGTTGCGA
AACCTATAGGAGCACGCTGCGAGGGTTGGAAAGGCTGGTGGCATAAGGCG
TTCCTCTTCTCCAGCTGGCCTCGGGCGTTCGACGGAACTTGCGCAGGCGT
TACAATTTCGTCTGCTTTACGGACGATGTACTAGCCCTCGACGGAATGAC
TAGGGTCGTTGCGAAACCTATAGGAGCACGCTGCGAGGGTTGGAAAGGCT
GGTGGCATAAGGCGTTCCTCTTCTCCAGGGAGGCCGGCCTTAAGGGGCGT
GTGCTATACTTTGACCTGGACACGGTCATCGTGGGTCCCTTGGACGATAT
CGCCGGTTACGTCGAGCCGTTTGCAGCCCTCTCTGTCGCCGAAATGGCCA
ATGAACACCGCTCTGAGGGATTGAACAGCAGCCTCATGTCATGGGATGCG
GACTCGGGAGGCCGGCCTTAAGGGGCGTGTGCTATACTTTGACCTGGACA
CGGTCATCGTGGGTCCCTTGGACGATATCGCCGGTTACGTCGAGCCGTTT
GCAGCCCTCTCTGTCGCCGAAATGGCCAATGAACACCGCTCTGAGGGATT
GAACAGCAGCCTCATGTCATGGGATGCGGACTCG
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