mRNA_M-pyrifera_M_contig97064.22362.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig97064.22362.1
Unique NamemRNA_M-pyrifera_M_contig97064.22362.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig97064.22362.1 vs. uniprot
Match: D8LAU2_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAU2_ECTSI)

HSP 1 Score: 131 bits (330), Expect = 4.230e-35
Identity = 61/77 (79.22%), Postives = 71/77 (92.21%), Query Frame = 1 
Query:   10 DRLVLVMELLPGGDLRTLLSNCEQPLPEQQSRQIIGDICAGMAFLHSKEAVHGDLKSANVLLDGAGRAKVGVYRLSR 240
            DRL+LVMELL GGDLRTLLS+C+QP PE+QSR+IIGD+C+GMAFLHSK+ VHGDLKSANVLLDGAGRAK+G +  SR
Sbjct:  190 DRLILVMELLSGGDLRTLLSSCDQPFPEEQSRRIIGDVCSGMAFLHSKDTVHGDLKSANVLLDGAGRAKIGDFGTSR 266
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BLAST of mRNA_M-pyrifera_M_contig97064.22362.1 vs. uniprot
Match: D8LRE9_ECTSI (Transmembrane receptor kinase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRE9_ECTSI)

HSP 1 Score: 129 bits (324), Expect = 5.190e-33
Identity = 62/80 (77.50%), Postives = 72/80 (90.00%), Query Frame = 1 
Query:    1 TVQDRLVLVMELLPGGDLRTLLSNCEQPLPEQQSRQIIGDICAGMAFLHSKEAVHGDLKSANVLLDGAGRAKVGVYRLSR 240
            ++ DR+VLVMELL GGDLRTLL N +QPLPE+QSR+IIGDICAGMAFLHSK+ VHGDLKSANVLLDG+GRAK+G +  SR
Sbjct:  750 SLPDRMVLVMELLSGGDLRTLLRNYQQPLPEEQSRRIIGDICAGMAFLHSKDTVHGDLKSANVLLDGSGRAKIGDFGTSR 829
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BLAST of mRNA_M-pyrifera_M_contig97064.22362.1 vs. uniprot
Match: A0A6H5K8V7_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8V7_9PHAE)

HSP 1 Score: 125 bits (314), Expect = 1.460e-32
Identity = 61/72 (84.72%), Postives = 65/72 (90.28%), Query Frame = 1 
Query:    1 TVQDRLVLVMELLPGGDLRTLLSNCEQPLPEQQSRQIIGDICAGMAFLHSKEAVHGDLKSANVLLDGAGRAK 216
            ++ DRLVLVMELLPGGDL+TLL N EQPLPE+QSR IIGDICAGM FLHSKE VHGDLKSANVLLDG GRAK
Sbjct:  226 SLPDRLVLVMELLPGGDLQTLLKNSEQPLPEEQSRMIIGDICAGMMFLHSKETVHGDLKSANVLLDGVGRAK 297
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BLAST of mRNA_M-pyrifera_M_contig97064.22362.1 vs. uniprot
Match: D7FN19_ECTSI (Putative CTR1-like protein kinase/ leucine rich repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN19_ECTSI)

HSP 1 Score: 127 bits (318), Expect = 3.370e-32
Identity = 60/80 (75.00%), Postives = 69/80 (86.25%), Query Frame = 1 
Query:    1 TVQDRLVLVMELLPGGDLRTLLSNCEQPLPEQQSRQIIGDICAGMAFLHSKEAVHGDLKSANVLLDGAGRAKVGVYRLSR 240
            ++ DRL+LV+ELLPGGDLRT+L N EQPLPE+QSRQII DICAGMAFLHSK  VHGDLKSAN+LLD  GRAK+G +  SR
Sbjct:  959 SLPDRLILVLELLPGGDLRTMLKNSEQPLPEEQSRQIIKDICAGMAFLHSKSTVHGDLKSANILLDARGRAKIGDFGTSR 1038
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BLAST of mRNA_M-pyrifera_M_contig97064.22362.1 vs. uniprot
Match: A0A6H5KY76_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY76_9PHAE)

HSP 1 Score: 126 bits (316), Expect = 6.280e-32
Identity = 62/77 (80.52%), Postives = 67/77 (87.01%), Query Frame = 1 
Query:   10 DRLVLVMELLPGGDLRTLLSNCEQPLPEQQSRQIIGDICAGMAFLHSKEAVHGDLKSANVLLDGAGRAKVGVYRLSR 240
            DRLVLVMELL GGDLR LL N +QPLPE+Q R+IIGDICAGM FLHSKE VHGDLKSANVLLDGAGRAK+G +  SR
Sbjct: 1012 DRLVLVMELLAGGDLRRLLKNSDQPLPEEQCRRIIGDICAGMHFLHSKETVHGDLKSANVLLDGAGRAKIGDFGTSR 1088
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BLAST of mRNA_M-pyrifera_M_contig97064.22362.1 vs. uniprot
Match: D8LHV1_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHV1_ECTSI)

HSP 1 Score: 123 bits (309), Expect = 5.520e-31
Identity = 59/77 (76.62%), Postives = 67/77 (87.01%), Query Frame = 1 
Query:   10 DRLVLVMELLPGGDLRTLLSNCEQPLPEQQSRQIIGDICAGMAFLHSKEAVHGDLKSANVLLDGAGRAKVGVYRLSR 240
            D +VLVMELL GGDLRTLL   EQPLP++QSR+IIGDICAGMAFLH K+ VHGDLKSANVLLDG+GRAK+G +  SR
Sbjct:  892 DHMVLVMELLSGGDLRTLLRTSEQPLPQEQSRRIIGDICAGMAFLHEKDTVHGDLKSANVLLDGSGRAKIGDFGTSR 968
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BLAST of mRNA_M-pyrifera_M_contig97064.22362.1 vs. uniprot
Match: D8LH32_ECTSI (Leucine rich repeat tyrosine kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH32_ECTSI)

HSP 1 Score: 121 bits (303), Expect = 3.560e-30
Identity = 59/80 (73.75%), Postives = 66/80 (82.50%), Query Frame = 1 
Query:    1 TVQDRLVLVMELLPGGDLRTLLSNCEQPLPEQQSRQIIGDICAGMAFLHSKEAVHGDLKSANVLLDGAGRAKVGVYRLSR 240
            ++ DRLVLVMELL GGDLR +L N EQPLPE + RQII D+CAGMAFLHSK  VHGDLKSANVLLDG GRAK+G +  SR
Sbjct:  897 SLPDRLVLVMELLAGGDLRAMLKNSEQPLPEDKCRQIIQDVCAGMAFLHSKATVHGDLKSANVLLDGRGRAKIGDFGTSR 976
[Close]
BLAST of mRNA_M-pyrifera_M_contig97064.22362.1 vs. uniprot
Match: A0A6H5KA37_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA37_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 6.630e-30
Identity = 57/72 (79.17%), Postives = 64/72 (88.89%), Query Frame = 1 
Query:    1 TVQDRLVLVMELLPGGDLRTLLSNCEQPLPEQQSRQIIGDICAGMAFLHSKEAVHGDLKSANVLLDGAGRAK 216
            ++ DRL+LV+ELLPGGDLRT+L N EQPLPE+QSRQII DICAGMAFLHSK  VHGDLKSAN+LLD  GRAK
Sbjct:  841 SLPDRLILVLELLPGGDLRTMLKNSEQPLPEEQSRQIIKDICAGMAFLHSKSTVHGDLKSANILLDARGRAK 912
[Close]
BLAST of mRNA_M-pyrifera_M_contig97064.22362.1 vs. uniprot
Match: A0A6H5KF25_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF25_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 6.640e-30
Identity = 58/80 (72.50%), Postives = 66/80 (82.50%), Query Frame = 1 
Query:    1 TVQDRLVLVMELLPGGDLRTLLSNCEQPLPEQQSRQIIGDICAGMAFLHSKEAVHGDLKSANVLLDGAGRAKVGVYRLSR 240
            ++ DR+VLVMELLP GDL TLL    +PLPE++SRQIIGDICAGMAFLH K  VHGDLKSANVLLDG GRAK+G +  SR
Sbjct:  900 SLSDRMVLVMELLPNGDLLTLLRRSTKPLPEEKSRQIIGDICAGMAFLHGKNTVHGDLKSANVLLDGGGRAKIGDFGTSR 979
[Close]
BLAST of mRNA_M-pyrifera_M_contig97064.22362.1 vs. uniprot
Match: D7G7X7_ECTSI (ATP binding / amino acid binding / protein kinase/ protein serine/threonine kinase/ protein-tyrosine n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7X7_ECTSI)

HSP 1 Score: 120 bits (300), Expect = 9.050e-30
Identity = 58/80 (72.50%), Postives = 65/80 (81.25%), Query Frame = 1 
Query:    1 TVQDRLVLVMELLPGGDLRTLLSNCEQPLPEQQSRQIIGDICAGMAFLHSKEAVHGDLKSANVLLDGAGRAKVGVYRLSR 240
            ++ DR+VLVMELLP GDL TLL     PLPE++SRQIIGDICAGMAFLH K  VHGDLKSANVLLDG GRAK+G +  SR
Sbjct:  875 SLSDRMVLVMELLPNGDLLTLLRRSTNPLPEEKSRQIIGDICAGMAFLHGKNTVHGDLKSANVLLDGGGRAKIGDFGTSR 954
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig97064.22362.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LAU2_ECTSI4.230e-3579.22Protein kinase domain-containing protein n=1 Tax=E... [more]
D8LRE9_ECTSI5.190e-3377.50Transmembrane receptor kinase n=2 Tax=Ectocarpus s... [more]
A0A6H5K8V7_9PHAE1.460e-3284.72Protein kinase domain-containing protein n=1 Tax=E... [more]
D7FN19_ECTSI3.370e-3275.00Putative CTR1-like protein kinase/ leucine rich re... [more]
A0A6H5KY76_9PHAE6.280e-3280.52Protein kinase domain-containing protein n=1 Tax=E... [more]
D8LHV1_ECTSI5.520e-3176.62Protein kinase domain-containing protein n=1 Tax=E... [more]
D8LH32_ECTSI3.560e-3073.75Leucine rich repeat tyrosine kinase n=1 Tax=Ectoca... [more]
A0A6H5KA37_9PHAE6.630e-3079.17Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A6H5KF25_9PHAE6.640e-3072.50Protein kinase domain-containing protein n=1 Tax=E... [more]
D7G7X7_ECTSI9.050e-3072.50ATP binding / amino acid binding / protein kinase/... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig97064contigM-pyrifera_M_contig97064:369..614 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score121.3
Seed ortholog evalue1.8e-25
Seed eggNOG ortholog2880.D8LAU2
Preferred nameRIPK4
KEGG koko:K02861,ko:K08846,ko:K08847,ko:K08848,ko:K16289
KEGG Pathwayko04064,ko04210,ko04217,ko04620,ko04621,ko04622,ko04623,ko04668,ko04722,ko05131,ko05152,ko05160,ko05169,map04064,map04210,map04217,map04620,map04621,map04622,map04623,map04668,map04722,map05131,map05152,map05160,map05169
Hectar predicted targeting categoryother localisation
GOsGO:0002009,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006355,GO:0008150,GO:0009653,GO:0009888,GO:0009889,GO:0010468,GO:0010556,GO:0016020,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0032502,GO:0044093,GO:0044424,GO:0044464,GO:0048518,GO:0048729,GO:0048856,GO:0050789,GO:0050794,GO:0051090,GO:0051091,GO:0051092,GO:0051171,GO:0051252,GO:0060255,GO:0060429,GO:0065007,GO:0065009,GO:0080090,GO:1903506,GO:2000112,GO:2001141
EggNOG free text desc.protein kinase activity
EggNOG OGsCOG0515@1,KOG0192@2759
EC2.7.11.1
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001
Exons1
Model size246
Cds size219
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816886.9910161-UTR-M-pyrifera_M_contig97064:368..3951622816886.9910161-UTR-M-pyrifera_M_contig97064:368..395Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig97064 369..395 +
1692278236.8609905-UTR-M-pyrifera_M_contig97064:368..3951692278236.8609905-UTR-M-pyrifera_M_contig97064:368..395Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig97064 369..395 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816887.0087242-CDS-M-pyrifera_M_contig97064:395..6141622816887.0087242-CDS-M-pyrifera_M_contig97064:395..614Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig97064 396..614 +
1692278236.8741944-CDS-M-pyrifera_M_contig97064:395..6141692278236.8741944-CDS-M-pyrifera_M_contig97064:395..614Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig97064 396..614 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig97064.22362.1prot_M-pyrifera_M_contig97064.22362.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig97064 396..614 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig97064.22362.1

>prot_M-pyrifera_M_contig97064.22362.1 ID=prot_M-pyrifera_M_contig97064.22362.1|Name=mRNA_M-pyrifera_M_contig97064.22362.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=73bp
MELLPGGDLRTLLSNCEQPLPEQQSRQIIGDICAGMAFLHSKEAVHGDLK
SANVLLDGAGRAKVGVYRLSRR*
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mRNA from alignment at M-pyrifera_M_contig97064:369..614+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig97064.22362.1 ID=mRNA_M-pyrifera_M_contig97064.22362.1|Name=mRNA_M-pyrifera_M_contig97064.22362.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=246bp|location=Sequence derived from alignment at M-pyrifera_M_contig97064:369..614+ (Macrocystis pyrifera P11B4 male)
ACCGTGCAGGACCGTCTGGTGCTCGTCATGGAGCTGCTTCCGGGCGGAGA
CCTCCGAACGTTGTTGAGCAACTGCGAGCAACCTCTTCCCGAACAACAGT
CACGTCAGATCATCGGCGACATCTGCGCGGGGATGGCCTTCTTGCACAGC
AAGGAGGCCGTCCACGGAGACCTCAAGTCGGCCAATGTGCTACTGGACGG
GGCCGGCAGGGCCAAGGTAGGGGTATATCGCCTTAGTAGACGATAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig97064:369..614+

>mRNA_M-pyrifera_M_contig97064.22362.1 ID=mRNA_M-pyrifera_M_contig97064.22362.1|Name=mRNA_M-pyrifera_M_contig97064.22362.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=438bp|location=Sequence derived from alignment at M-pyrifera_M_contig97064:369..614+ (Macrocystis pyrifera P11B4 male)
ATGGAGCTGCTTCCGGGCGGAGACCTCCGAACGTTGTTGAGCAACTGCGA
GCAACCTCTTCCCGAACAACAGTCACGTCAGATCATCGGCGACATCTGCG
CGGGGATGGCCTTCTTGCACAGCAAGGAGGCCGTCCACGGAGACCTCAAG
TCGGCCAATGTGCTACTGGACGGGGCCGGCAGGGCCAAGGTAGGGGTATA
TCGCCTTAGTAGACGATAGATGGAGCTGCTTCCGGGCGGAGACCTCCGAA
CGTTGTTGAGCAACTGCGAGCAACCTCTTCCCGAACAACAGTCACGTCAG
ATCATCGGCGACATCTGCGCGGGGATGGCCTTCTTGCACAGCAAGGAGGC
CGTCCACGGAGACCTCAAGTCGGCCAATGTGCTACTGGACGGGGCCGGCA
GGGCCAAGGTAGGGGTATATCGCCTTAGTAGACGATAG
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