mRNA_M-pyrifera_M_contig96751.22276.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig96751.22276.1
Unique NamemRNA_M-pyrifera_M_contig96751.22276.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig96751.22276.1 vs. uniprot
Match: A0A2R5GNZ8_9STRA (Calcineurin B-like protein 1 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GNZ8_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 9.670e-12
Identity = 47/162 (29.01%), Postives = 85/162 (52.47%), Query Frame = 1
Query:    1 TRFDSAELEMLYEQFHEVASTR-DEYCIDLEQFQSIVVNVEGWLRWRRDLSRRLFRAADKNDNGYLDFIEFVSGLGVVC-KGTLREKLEFYWRLHSKEGEGDSGLEIAEYYMTLDAVVRAYFEDQ---VYEADLNALVKWTFEQADVGKKGRVEFADVCSLL 471
            T FDS E+  LY  F  +AS++ D+  ID  +F+  +   +           RLF   D+ND+GY++F EF+ GL ++C +GTL EK  F +R++  + +     E       L ++++    +    +    L  +++ TFE+ADV + G ++F +  +L+
Sbjct:   23 THFDSEEILALYSHFKSIASSQTDDGQIDRNEFREAIGLTDSLF------VDRLFSLFDENDDGYINFQEFICGLSILCVRGTLDEKTHFSFRIYDFDNDNKISNE------ELTSMLKTSLGENGVVLTPTQLELIIRATFEEADVNRDGFIDFEEYKALV 172          
BLAST of mRNA_M-pyrifera_M_contig96751.22276.1 vs. uniprot
Match: A0A3Q2XHL3_HIPCM (TBC1 domain family member 9 n=2 Tax=Syngnathidae TaxID=72045 RepID=A0A3Q2XHL3_HIPCM)

HSP 1 Score: 66.2 bits (160), Expect = 1.050e-9
Identity = 41/127 (32.28%), Postives = 65/127 (51.18%), Query Frame = 1
Query:   67 DEYCIDLEQFQSIVVNVEGWLRWRRD--LSRRLFRAADKNDNGYLDFIEFVSGLGVVCKGTLREKLEFYWRLH------SKEGEGDSGLEIAEYYMTLDAVVRAYFEDQVYEADLNALVKWTFEQAD 423
            ++Y ID EQF+ +   +  W        L+ RLFR  D N + +++F EF++GLGV+C G L EKL+  +++H      S++ E DS  E  +Y+          FED   E  ++   K   E+ D
Sbjct:  854 EQYRIDAEQFKGLFKLLFPWANGAHSDPLAVRLFRLLDHNGDAFINFREFINGLGVLCHGDLTEKLKLLYKMHVLPEVTSEQEEPDSAFEATQYF----------FEDMTPETSMSQDAKNRSEKDD 970          
BLAST of mRNA_M-pyrifera_M_contig96751.22276.1 vs. uniprot
Match: A0A1Y1XNK9_9FUNG (EF-hand (Fragment) n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1XNK9_9FUNG)

HSP 1 Score: 65.5 bits (158), Expect = 1.220e-9
Identity = 36/100 (36.00%), Postives = 59/100 (59.00%), Query Frame = 1
Query:    1 TRFDSAELEMLYEQFHEVASTRDEYCIDLEQFQSIVVNVEGWLRWRRDL-SRRLFRAADKNDNGYLDFIEFVSGLGVVCKGTLREKLEFYWRLHSKEGEG 297
            T FD  ELE L++QF  +A+   E  +     + +     G L   ++L + R+F+  D+N++G +DF EFVSGL ++CKG L EK+   +R +  +G+G
Sbjct:   87 THFDQVELEALFDQFKSLATAEGEGIV-----KPVFEQCLGPLGMEKNLITERIFKFFDQNEDGLIDFTEFVSGLSILCKGNLEEKIIHAFRGYDIDGDG 181          
BLAST of mRNA_M-pyrifera_M_contig96751.22276.1 vs. uniprot
Match: A0A3Q2XHJ3_HIPCM (TBC1 domain family member 9 n=1 Tax=Hippocampus comes TaxID=109280 RepID=A0A3Q2XHJ3_HIPCM)

HSP 1 Score: 65.1 bits (157), Expect = 2.640e-9
Identity = 38/116 (32.76%), Postives = 61/116 (52.59%), Query Frame = 1
Query:   67 DEYCIDLEQFQSIVVNVEGWLRWRRD--LSRRLFRAADKNDNGYLDFIEFVSGLGVVCKGTLREKLEFYWRLH------SKEGEGDSGLEIAEYYMTLDAVVRAYFEDQVYEADLN 390
            ++Y ID EQF+ +   +  W        L+ RLFR  D N + +++F EF++GLGV+C G L EKL+  +++H      S++ E DS  E  +Y+          FED   E  ++
Sbjct:  802 EQYRIDAEQFKGLFKLLFPWANGAHSDPLAVRLFRLLDHNGDAFINFREFINGLGVLCHGDLTEKLKLLYKMHVLPEVTSEQEEPDSAFEATQYF----------FEDMTPETSMS 907          
BLAST of mRNA_M-pyrifera_M_contig96751.22276.1 vs. uniprot
Match: A0A7S2WR96_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2WR96_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 4.940e-9
Identity = 44/154 (28.57%), Postives = 83/154 (53.90%), Query Frame = 1
Query:    1 TRFDSAELEMLYEQFHEVASTR-DEYCIDLEQFQSIVVNVEGWLRWRRDLSRRLFRAADKNDNGYLDFIEFVSGLGVVC-KGTLREKLEFYWRLHSKEGEGDSGLEIAEYYMTLDAVVRAYFEDQVYEADLNALVKWTFEQADVGKKGRVEFAD 456
            T F + E++ LY  F  +AS++ D+  ID  +F+  +   +           RLF+  D+ND+G ++F EF+ GL ++C +GTL EK+ F +R++  + + D+ +   E    L   +     D +  A +  +++ TFE+AD+   G ++F +
Sbjct:   23 THFGAEEIDALYAHFRSIASSQTDDGFIDRSEFREAMGLSDSLF------VDRLFQLFDENDDGRINFQEFLCGLSILCIRGTLEEKMMFSFRIY--DFDNDNKISNEELTSMLKTSLLENGVD-MSPAQVELIIRSTFEEADINLDGFIDFEE 167          
BLAST of mRNA_M-pyrifera_M_contig96751.22276.1 vs. uniprot
Match: A0A158PKD0_ANGCS (Uncharacterized protein n=1 Tax=Angiostrongylus costaricensis TaxID=334426 RepID=A0A158PKD0_ANGCS)

HSP 1 Score: 62.0 bits (149), Expect = 6.720e-9
Identity = 49/162 (30.25%), Postives = 80/162 (49.38%), Query Frame = 1
Query:    1 TRFDSAELEMLYEQFHEVA-STRDEYCIDLEQFQSIVVNVEGWLRWRRDLSRRLFRAADKNDNGYLDFIEFVSGLGVVCKGTLREKLEFYWRLHSKEGEGDSGLEIAEYYMTLDAVVRAYFEDQVYEADLNALVKW----TFEQADVGKKGRV---EFADVC 462
            T F   E+  +Y  F E + S      I  E+F  +  +  G +    DL   LF   D ++NG ++F EFV  L V+C+GT+ EKLE+ ++L+  +G+G+   +   Y +T          D +  A  N   +W     F++ D+GK+GR+   +F  VC
Sbjct:   24 THFSKNEIRSIYRAFKETSPSAVINKAILREKFAELFPH--GNIEHYSDL---LFDTFDNDNNGTINFQEFVKALSVLCRGTVDEKLEWLYKLYDPKGKGEITWQRLFYVITS--------MDDLMGAPHNTKDRWLNLFNFQKFDIGKRGRISKEDFFTVC 172          
BLAST of mRNA_M-pyrifera_M_contig96751.22276.1 vs. uniprot
Match: A0A6B2LKW6_9EUKA (Uncharacterized protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2LKW6_9EUKA)

HSP 1 Score: 60.1 bits (144), Expect = 2.120e-8
Identity = 42/151 (27.81%), Postives = 78/151 (51.66%), Query Frame = 1
Query:   22 LEMLYEQFHEVASTRDEY-CIDLEQFQSIVVNVEGWLRWRRDLSRRLFRAADKNDNGYLDFIEFVSGLGVVCKGTLREKLEFYWRLHSKEGEGDSGLEIAEYYMTLDAVVRAYFEDQVYEADLNALVKWTFEQADVGKKGRVEFADVCSLL 471
            +E+LY  +  V+   DE   ID+ +F+       GW   +  ++ R+F   D N++G+++F EFVSGL +   G+  EKL+F +RL+  +G+G   ++  E    L A +       +  + L  ++  TF+Q D     ++ F +  +L+
Sbjct:    1 MEVLYAAYSHVSGLEDEDGLIDIVEFKRAC----GWEDSK--VAERIFHLFDINNDGHVNFEEFVSGLAIFKSGSTEEKLKFSFRLYDVDGDGF--IQKKELLEMLRASLLENCTLNLSSSQLERIIDSTFKQVDTNSDDQISFEEYSALV 143          
BLAST of mRNA_M-pyrifera_M_contig96751.22276.1 vs. uniprot
Match: B3RJP6_TRIAD (Uncharacterized protein n=2 Tax=Trichoplax TaxID=10227 RepID=B3RJP6_TRIAD)

HSP 1 Score: 62.4 bits (150), Expect = 2.300e-8
Identity = 32/92 (34.78%), Postives = 53/92 (57.61%), Query Frame = 1
Query:   64 RDEYCIDLEQFQSIVVNVEGWLR------WRRD--LSRRLFRAADKNDNGYLDFIEFVSGLGVVCKGTLREKLEFYWRLHSKEGEGDSGLEI 315
            R+E+ ID EQF+++   +  W          RD  ++ R+F+  D +  G + F +F  GLGV+C+GT +EKL F +R+H +    + G+EI
Sbjct:  973 RNEHTIDKEQFKALYFCLSPWTNNLQNGTGDRDEVVANRIFKVLDDDKRGMITFRDFAWGLGVICRGTTKEKLSFLYRMHVQPVLSEDGIEI 1064          
BLAST of mRNA_M-pyrifera_M_contig96751.22276.1 vs. uniprot
Match: I3IU38_ORENI (TBC1 domain family, member 9 (with GRAM domain) n=15 Tax=Pseudocrenilabrinae TaxID=318546 RepID=I3IU38_ORENI)

HSP 1 Score: 60.1 bits (144), Expect = 1.440e-7
Identity = 34/107 (31.78%), Postives = 60/107 (56.07%), Query Frame = 1
Query:   67 DEYCIDLEQFQSIVVNVEGWLRWRRD--LSRRLFRAADKNDNGYLDFIEFVSGLGVVCKGTLREKLEFYWRLHSKEG----EGDSGLEIAEYYMTLDAVVRAYFEDQ 369
            ++Y ID  QF+ + V++  W+    +  LS RLFR  D+N +G ++F EF++GL  +  G + EKL+  ++LH        E +S LE  +++   +    ++F DQ
Sbjct:  841 EQYRIDPLQFRQLFVSLAPWVCGGHNPTLSARLFRLLDQNQDGLVNFKEFITGLSGMYHGDMTEKLKLLYKLHLPPALCPEEAESALEATQFFTEEEPREASFFSDQ 947          
BLAST of mRNA_M-pyrifera_M_contig96751.22276.1 vs. uniprot
Match: UPI0003EBFA2A (TBC1 domain family member 9B isoform X1 n=3 Tax=Neolamprologus brichardi TaxID=32507 RepID=UPI0003EBFA2A)

HSP 1 Score: 60.1 bits (144), Expect = 1.440e-7
Identity = 34/107 (31.78%), Postives = 60/107 (56.07%), Query Frame = 1
Query:   67 DEYCIDLEQFQSIVVNVEGWLRWRRD--LSRRLFRAADKNDNGYLDFIEFVSGLGVVCKGTLREKLEFYWRLHSKEG----EGDSGLEIAEYYMTLDAVVRAYFEDQ 369
            ++Y ID  QF+ + V++  W+    +  LS RLFR  D+N +G ++F EF++GL  +  G + EKL+  ++LH        E +S LE  +++   +    ++F DQ
Sbjct:  847 EQYRIDPLQFRQLFVSLAPWVCGGHNPTLSARLFRLLDQNQDGLVNFKEFITGLSGMYHGDMTEKLKLLYKLHLPPALCPEEAESALEATQFFTEEEPREASFFSDQ 953          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig96751.22276.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2R5GNZ8_9STRA9.670e-1229.01Calcineurin B-like protein 1 n=1 Tax=Hondaea ferme... [more]
A0A3Q2XHL3_HIPCM1.050e-932.28TBC1 domain family member 9 n=2 Tax=Syngnathidae T... [more]
A0A1Y1XNK9_9FUNG1.220e-936.00EF-hand (Fragment) n=1 Tax=Basidiobolus meristospo... [more]
A0A3Q2XHJ3_HIPCM2.640e-932.76TBC1 domain family member 9 n=1 Tax=Hippocampus co... [more]
A0A7S2WR96_9STRA4.940e-928.57Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A158PKD0_ANGCS6.720e-930.25Uncharacterized protein n=1 Tax=Angiostrongylus co... [more]
A0A6B2LKW6_9EUKA2.120e-827.81Uncharacterized protein n=1 Tax=Arcella intermedia... [more]
B3RJP6_TRIAD2.300e-834.78Uncharacterized protein n=2 Tax=Trichoplax TaxID=1... [more]
I3IU38_ORENI1.440e-731.78TBC1 domain family, member 9 (with GRAM domain) n=... [more]
UPI0003EBFA2A1.440e-731.78TBC1 domain family member 9B isoform X1 n=3 Tax=Ne... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig96751contigM-pyrifera_M_contig96751:145..615 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score66.6
Seed ortholog evalue1.1e-08
Seed eggNOG ortholog7994.ENSAMXP00000005791
Preferred nameTBC1D9
KEGG koko:K19951
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005096,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0006810,GO:0006886,GO:0008047,GO:0008104,GO:0008150,GO:0012505,GO:0015031,GO:0015833,GO:0017016,GO:0017137,GO:0019899,GO:0030234,GO:0030695,GO:0031267,GO:0031338,GO:0032879,GO:0033036,GO:0033043,GO:0034613,GO:0042886,GO:0043085,GO:0043087,GO:0043547,GO:0044093,GO:0044464,GO:0045184,GO:0046907,GO:0050789,GO:0050790,GO:0050794,GO:0051020,GO:0051049,GO:0051128,GO:0051179,GO:0051234,GO:0051336,GO:0051345,GO:0051641,GO:0051649,GO:0060589,GO:0060627,GO:0065007,GO:0065009,GO:0070727,GO:0071702,GO:0071705,GO:0090630,GO:0098772
EggNOG free text desc.TBC1 domain family, member 9
EggNOG OGs38BD9@33154,3BA0W@33208,3CTC9@33213,486TW@7711,493BN@7742,49S3D@7898,COG5210@1,KOG4347@2759
COG Functional cat.S
Best tax levelActinopterygii
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons1
Model size471
Cds size444
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816882.174557-UTR-M-pyrifera_M_contig96751:144..1711622816882.174557-UTR-M-pyrifera_M_contig96751:144..171Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig96751 145..171 +
1692278234.1014383-UTR-M-pyrifera_M_contig96751:144..1711692278234.1014383-UTR-M-pyrifera_M_contig96751:144..171Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig96751 145..171 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816882.1869395-CDS-M-pyrifera_M_contig96751:171..6151622816882.1869395-CDS-M-pyrifera_M_contig96751:171..615Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig96751 172..615 +
1692278234.114984-CDS-M-pyrifera_M_contig96751:171..6151692278234.114984-CDS-M-pyrifera_M_contig96751:171..615Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig96751 172..615 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig96751.22276.1prot_M-pyrifera_M_contig96751.22276.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig96751 172..615 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig96751.22276.1

>prot_M-pyrifera_M_contig96751.22276.1 ID=prot_M-pyrifera_M_contig96751.22276.1|Name=mRNA_M-pyrifera_M_contig96751.22276.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=148bp
MLYEQFHEVASTRDEYCIDLEQFQSIVVNVEGWLRWRRDLSRRLFRAADK
NDNGYLDFIEFVSGLGVVCKGTLREKLEFYWRLHSKEGEGDSGLEIAEYY
MTLDAVVRAYFEDQVYEADLNALVKWTFEQADVGKKGRVEFADVCSLL
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mRNA from alignment at M-pyrifera_M_contig96751:145..615+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig96751.22276.1 ID=mRNA_M-pyrifera_M_contig96751.22276.1|Name=mRNA_M-pyrifera_M_contig96751.22276.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=471bp|location=Sequence derived from alignment at M-pyrifera_M_contig96751:145..615+ (Macrocystis pyrifera P11B4 male)
ACGCGCTTCGACAGCGCAGAGCTTGAGATGCTCTACGAGCAATTCCACGA GGTGGCGAGCACACGTGATGAGTACTGCATAGACCTCGAGCAGTTCCAGA GCATTGTCGTGAACGTGGAGGGTTGGCTGCGCTGGAGGAGAGACCTCTCC CGCCGCCTCTTCAGGGCGGCGGACAAGAACGACAACGGCTACCTCGACTT CATCGAGTTCGTCTCCGGCCTTGGTGTTGTGTGCAAGGGCACTCTGCGCG AGAAGCTCGAGTTCTATTGGCGACTGCACTCCAAGGAAGGGGAGGGAGAC AGCGGCCTGGAGATTGCCGAGTACTACATGACGCTCGACGCCGTCGTGCG CGCTTACTTCGAGGACCAGGTCTACGAGGCAGACCTGAATGCCCTCGTCA AGTGGACCTTCGAGCAAGCAGACGTGGGCAAGAAGGGCCGTGTCGAGTTT GCCGACGTGTGCAGCCTCCTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig96751:145..615+

>mRNA_M-pyrifera_M_contig96751.22276.1 ID=mRNA_M-pyrifera_M_contig96751.22276.1|Name=mRNA_M-pyrifera_M_contig96751.22276.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=888bp|location=Sequence derived from alignment at M-pyrifera_M_contig96751:145..615+ (Macrocystis pyrifera P11B4 male)
ATGCTCTACGAGCAATTCCACGAGGTGGCGAGCACACGTGATGAGTACTG
CATAGACCTCGAGCAGTTCCAGAGCATTGTCGTGAACGTGGAGGGTTGGC
TGCGCTGGAGGAGAGACCTCTCCCGCCGCCTCTTCAGGGCGGCGGACAAG
AACGACAACGGCTACCTCGACTTCATCGAGTTCGTCTCCGGCCTTGGTGT
TGTGTGCAAGGGCACTCTGCGCGAGAAGCTCGAGTTCTATTGGCGACTGC
ACTCCAAGGAAGGGGAGGGAGACAGCGGCCTGGAGATTGCCGAGTACTAC
ATGACGCTCGACGCCGTCGTGCGCGCTTACTTCGAGGACCAGGTCTACGA
GGCAGACCTGAATGCCCTCGTCAAGTGGACCTTCGAGCAAGCAGACGTGG
GCAAGAAGGGCCGTGTCGAGTTTGCCGACGTGTGCAGCCTCCTGATGCTC
TACGAGCAATTCCACGAGGTGGCGAGCACACGTGATGAGTACTGCATAGA
CCTCGAGCAGTTCCAGAGCATTGTCGTGAACGTGGAGGGTTGGCTGCGCT
GGAGGAGAGACCTCTCCCGCCGCCTCTTCAGGGCGGCGGACAAGAACGAC
AACGGCTACCTCGACTTCATCGAGTTCGTCTCCGGCCTTGGTGTTGTGTG
CAAGGGCACTCTGCGCGAGAAGCTCGAGTTCTATTGGCGACTGCACTCCA
AGGAAGGGGAGGGAGACAGCGGCCTGGAGATTGCCGAGTACTACATGACG
CTCGACGCCGTCGTGCGCGCTTACTTCGAGGACCAGGTCTACGAGGCAGA
CCTGAATGCCCTCGTCAAGTGGACCTTCGAGCAAGCAGACGTGGGCAAGA
AGGGCCGTGTCGAGTTTGCCGACGTGTGCAGCCTCCTG
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