mRNA_M-pyrifera_M_contig9674.22274.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig9674.22274.1
Unique NamemRNA_M-pyrifera_M_contig9674.22274.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig9674.22274.1 vs. uniprot
Match: D8LFN1_ECTSI (Heat shock protein 40 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFN1_ECTSI)

HSP 1 Score: 101 bits (251), Expect = 2.880e-23
Identity = 57/79 (72.15%), Postives = 65/79 (82.28%), Query Frame = 1
Query:   19 ALRPA-GWSTSRART-RPSR--MMRMGRDLYEVLGVDRGCSKADLKSSFRKLAREYHPDVNDSPEAKDKFNEISQAYTV 243
            A RPA   S+SRAR+ RPS+   +RMGRDLYEVLGVDRG  K+ LKS+FRKLAREYHPDVNDSP A +KFNEIS AY+V
Sbjct:   77 ARRPARSSSSSRARSSRPSQGGALRMGRDLYEVLGVDRGADKSQLKSAFRKLAREYHPDVNDSPGASEKFNEISTAYSV 155          
BLAST of mRNA_M-pyrifera_M_contig9674.22274.1 vs. uniprot
Match: A0A6L4A0C0_9CHLR (DnaJ domain-containing protein (Fragment) n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A6L4A0C0_9CHLR)

HSP 1 Score: 77.0 bits (188), Expect = 7.190e-17
Identity = 35/58 (60.34%), Postives = 44/58 (75.86%), Query Frame = 1
Query:   82 MGRDLYEVLGVDRGCSKADLKSSFRKLAREYHPDVNDSPEAKDKFNEISQAYTVSSQP 255
            M RD YE+LG+ R  S  DLK +FR LAR+YHPDVN SP+A++KF EI++AY V S P
Sbjct:    1 MPRDYYEILGITRSASTDDLKKAFRNLARQYHPDVNKSPDAEEKFKEINEAYQVLSDP 58          
BLAST of mRNA_M-pyrifera_M_contig9674.22274.1 vs. uniprot
Match: A0A8J6I615_9ACTN (Molecular chaperone DnaJ (Fragment) n=1 Tax=Longispora sp. TaxID=1929489 RepID=A0A8J6I615_9ACTN)

HSP 1 Score: 81.3 bits (199), Expect = 2.810e-16
Identity = 37/58 (63.79%), Postives = 46/58 (79.31%), Query Frame = 1
Query:   82 MGRDLYEVLGVDRGCSKADLKSSFRKLAREYHPDVNDSPEAKDKFNEISQAYTVSSQP 255
            M RD Y +LGVDRG S+ +LK ++RKLAR+YHPDVN +PEA+D+F EIS AY V S P
Sbjct:    1 MARDYYAILGVDRGASQDELKKAYRKLARQYHPDVNSAPEAQDRFKEISVAYEVLSDP 58          
BLAST of mRNA_M-pyrifera_M_contig9674.22274.1 vs. uniprot
Match: A0A842X041_9ARCH (Molecular chaperone DnaJ n=1 Tax=Candidatus Altiarchaeales archaeon TaxID=2250256 RepID=A0A842X041_9ARCH)

HSP 1 Score: 80.5 bits (197), Expect = 5.980e-16
Identity = 34/56 (60.71%), Postives = 48/56 (85.71%), Query Frame = 1
Query:   88 RDLYEVLGVDRGCSKADLKSSFRKLAREYHPDVNDSPEAKDKFNEISQAYTVSSQP 255
            RD YEVLGVD+G S+A++K ++RKLA++YHPDVN +PEA++KF E+S+AY V + P
Sbjct:    5 RDYYEVLGVDKGASEAEIKKAYRKLAKQYHPDVNKAPEAEEKFKEVSEAYEVLTDP 60          
BLAST of mRNA_M-pyrifera_M_contig9674.22274.1 vs. uniprot
Match: A0A2U2SHQ8_9CHLR (Chaperone protein DnaJ n=2 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A2U2SHQ8_9CHLR)

HSP 1 Score: 79.3 bits (194), Expect = 1.540e-15
Identity = 36/56 (64.29%), Postives = 45/56 (80.36%), Query Frame = 1
Query:   88 RDLYEVLGVDRGCSKADLKSSFRKLAREYHPDVNDSPEAKDKFNEISQAYTVSSQP 255
            RD YE+LGV R  S  DLKS+FR+LAR+YHPDVN SP+A++KF EI++AY V S P
Sbjct:    4 RDYYEILGVPRNASAEDLKSAFRRLARQYHPDVNKSPDAEEKFKEINEAYAVLSDP 59          
BLAST of mRNA_M-pyrifera_M_contig9674.22274.1 vs. uniprot
Match: A0A7C1EG33_9CHLR (Molecular chaperone DnaJ (Fragment) n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A7C1EG33_9CHLR)

HSP 1 Score: 77.4 bits (189), Expect = 5.110e-15
Identity = 33/54 (61.11%), Postives = 46/54 (85.19%), Query Frame = 1
Query:   82 MGRDLYEVLGVDRGCSKADLKSSFRKLAREYHPDVNDSPEAKDKFNEISQAYTV 243
            M RD YEVLGV RG +K ++K +FR LAR+YHPDVN++P+A+++F EI++AYTV
Sbjct:    5 MPRDYYEVLGVSRGATKDEIKRAFRALARQYHPDVNNAPDAEERFKEINEAYTV 58          
BLAST of mRNA_M-pyrifera_M_contig9674.22274.1 vs. uniprot
Match: U6EEQ6_9EURY (Chaperone protein DnaJ n=14 Tax=Methanobacteriales TaxID=2158 RepID=U6EEQ6_9EURY)

HSP 1 Score: 77.8 bits (190), Expect = 5.750e-15
Identity = 34/52 (65.38%), Postives = 42/52 (80.77%), Query Frame = 1
Query:   88 RDLYEVLGVDRGCSKADLKSSFRKLAREYHPDVNDSPEAKDKFNEISQAYTV 243
            RD YEVLGVD+G +K D+K ++RKLA EYHPDV+  PEA +KF EIS+AY V
Sbjct:    5 RDYYEVLGVDKGATKKDIKKAYRKLAMEYHPDVSKDPEASEKFKEISEAYAV 56          
BLAST of mRNA_M-pyrifera_M_contig9674.22274.1 vs. uniprot
Match: A0A7M3RG57_SPIER (Hypothetical protein n=1 Tax=Spirometra erinaceieuropaei TaxID=99802 RepID=A0A7M3RG57_SPIER)

HSP 1 Score: 75.1 bits (183), Expect = 6.870e-15
Identity = 32/51 (62.75%), Postives = 42/51 (82.35%), Query Frame = 1
Query:   91 DLYEVLGVDRGCSKADLKSSFRKLAREYHPDVNDSPEAKDKFNEISQAYTV 243
            D YE+LGV RGCS  D+K+++RKLAR YHPD N+SP+A +KF EI++AY V
Sbjct:   24 DYYEILGVARGCSTQDVKAAYRKLARIYHPDKNESPDASEKFREIAEAYEV 74          
BLAST of mRNA_M-pyrifera_M_contig9674.22274.1 vs. uniprot
Match: A0A101IJQ6_9CHLR (Chaperone protein DnaJ n=3 Tax=Anaerolineaceae TaxID=292628 RepID=A0A101IJQ6_9CHLR)

HSP 1 Score: 77.4 bits (189), Expect = 7.510e-15
Identity = 34/52 (65.38%), Postives = 44/52 (84.62%), Query Frame = 1
Query:   88 RDLYEVLGVDRGCSKADLKSSFRKLAREYHPDVNDSPEAKDKFNEISQAYTV 243
            RD YEVLGV RG S+ +LKS+FR LAR+YHPDV+D P+A++KF EI++AY V
Sbjct:    4 RDYYEVLGVSRGASEDELKSAFRSLARQYHPDVSDHPDAEEKFKEINEAYAV 55          
BLAST of mRNA_M-pyrifera_M_contig9674.22274.1 vs. uniprot
Match: A0A840QRH3_9BACI (Chaperone protein DnaJ n=1 Tax=Texcoconibacillus texcoconensis TaxID=1095777 RepID=A0A840QRH3_9BACI)

HSP 1 Score: 77.4 bits (189), Expect = 7.580e-15
Identity = 32/50 (64.00%), Postives = 43/50 (86.00%), Query Frame = 1
Query:   88 RDLYEVLGVDRGCSKADLKSSFRKLAREYHPDVNDSPEAKDKFNEISQAY 237
            RD YEVLGV  G S++++K ++RKLAR+YHPDVNDSP+A+DKF E+ +AY
Sbjct:    4 RDYYEVLGVGEGASESEIKKAYRKLARQYHPDVNDSPDAEDKFKEVQEAY 53          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig9674.22274.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFN1_ECTSI2.880e-2372.15Heat shock protein 40 n=2 Tax=Ectocarpus TaxID=287... [more]
A0A6L4A0C0_9CHLR7.190e-1760.34DnaJ domain-containing protein (Fragment) n=1 Tax=... [more]
A0A8J6I615_9ACTN2.810e-1663.79Molecular chaperone DnaJ (Fragment) n=1 Tax=Longis... [more]
A0A842X041_9ARCH5.980e-1660.71Molecular chaperone DnaJ n=1 Tax=Candidatus Altiar... [more]
A0A2U2SHQ8_9CHLR1.540e-1564.29Chaperone protein DnaJ n=2 Tax=Anaerolineae bacter... [more]
A0A7C1EG33_9CHLR5.110e-1561.11Molecular chaperone DnaJ (Fragment) n=1 Tax=Chloro... [more]
U6EEQ6_9EURY5.750e-1565.38Chaperone protein DnaJ n=14 Tax=Methanobacteriales... [more]
A0A7M3RG57_SPIER6.870e-1562.75Hypothetical protein n=1 Tax=Spirometra erinaceieu... [more]
A0A101IJQ6_9CHLR7.510e-1565.38Chaperone protein DnaJ n=3 Tax=Anaerolineaceae Tax... [more]
A0A840QRH3_9BACI7.580e-1564.00Chaperone protein DnaJ n=1 Tax=Texcoconibacillus t... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig9674contigM-pyrifera_M_contig9674:336..590 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score77.4
Seed ortholog evalue3.6e-12
Seed eggNOG ortholog44056.XP_009038797.1
KEGG koko:K03686
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009526,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0009941,GO:0016020,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0034357,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0055035
EggNOG free text desc.heat shock protein binding
EggNOG OGsCOG0484@1,KOG0715@2759
Ec32 ortholog descriptionHeat shock protein 40
Ec32 orthologEc-04_001500.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03029,ko03110
Exons1
Model size255
Cds size255
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816882.0258904-CDS-M-pyrifera_M_contig9674:335..5901622816882.0258904-CDS-M-pyrifera_M_contig9674:335..590Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9674 336..590 -
1692278233.989151-CDS-M-pyrifera_M_contig9674:335..5901692278233.989151-CDS-M-pyrifera_M_contig9674:335..590Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9674 336..590 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig9674.22274.1prot_M-pyrifera_M_contig9674.22274.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig9674 336..590 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig9674.22274.1

>prot_M-pyrifera_M_contig9674.22274.1 ID=prot_M-pyrifera_M_contig9674.22274.1|Name=mRNA_M-pyrifera_M_contig9674.22274.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=85bp
RTARDRALRPAGWSTSRARTRPSRMMRMGRDLYEVLGVDRGCSKADLKSS
FRKLAREYHPDVNDSPEAKDKFNEISQAYTVSSQP
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mRNA from alignment at M-pyrifera_M_contig9674:336..590-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig9674.22274.1 ID=mRNA_M-pyrifera_M_contig9674.22274.1|Name=mRNA_M-pyrifera_M_contig9674.22274.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=255bp|location=Sequence derived from alignment at M-pyrifera_M_contig9674:336..590- (Macrocystis pyrifera P11B4 male)
AGGACGGCCCGCGACCGAGCCCTGCGGCCCGCGGGATGGTCGACCTCACG GGCGAGGACTCGACCATCCCGCATGATGCGGATGGGGAGGGACCTTTACG AAGTTCTCGGCGTGGACAGAGGCTGCTCGAAAGCGGACCTTAAGTCGTCG TTCAGGAAGCTCGCGCGCGAGTACCACCCCGACGTGAACGACAGCCCCGA AGCGAAGGACAAATTCAACGAGATCAGCCAAGCCTACACCGTGAGTTCTC AGCCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig9674:336..590-

>mRNA_M-pyrifera_M_contig9674.22274.1 ID=mRNA_M-pyrifera_M_contig9674.22274.1|Name=mRNA_M-pyrifera_M_contig9674.22274.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=510bp|location=Sequence derived from alignment at M-pyrifera_M_contig9674:336..590- (Macrocystis pyrifera P11B4 male)
AGGACGGCCCGCGACCGAGCCCTGCGGCCCGCGGGATGGTCGACCTCACG
GGCGAGGACTCGACCATCCCGCATGATGCGGATGGGGAGGGACCTTTACG
AAGTTCTCGGCGTGGACAGAGGCTGCTCGAAAGCGGACCTTAAGTCGTCG
TTCAGGAAGCTCGCGCGCGAGTACCACCCCGACGTGAACGACAGCCCCGA
AGCGAAGGACAAATTCAACGAGATCAGCCAAGCCTACACCGTGAGTTCTC
AGCCCAGGACGGCCCGCGACCGAGCCCTGCGGCCCGCGGGATGGTCGACC
TCACGGGCGAGGACTCGACCATCCCGCATGATGCGGATGGGGAGGGACCT
TTACGAAGTTCTCGGCGTGGACAGAGGCTGCTCGAAAGCGGACCTTAAGT
CGTCGTTCAGGAAGCTCGCGCGCGAGTACCACCCCGACGTGAACGACAGC
CCCGAAGCGAAGGACAAATTCAACGAGATCAGCCAAGCCTACACCGTGAG
TTCTCAGCCC
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