mRNA_M-pyrifera_M_contig96681.22266.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig96681.22266.1
Unique NamemRNA_M-pyrifera_M_contig96681.22266.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig96681.22266.1 vs. uniprot
Match: A0A2A2L220_9BILA (RBR-type E3 ubiquitin transferase n=1 Tax=Diploscapter pachys TaxID=2018661 RepID=A0A2A2L220_9BILA)

HSP 1 Score: 60.8 bits (146), Expect = 3.470e-9
Identity = 23/61 (37.70%), Postives = 34/61 (55.74%), Query Frame = 1
Query:   10 KVCPGCGIGVFRTTGCDHIECTSCHCHFCYQCGFTAPSSGAIYAHLGHAGACVPRDWWREG 192
            K CP C + + +  GC+H+ECT C  HFC++CG+ +     +Y HLG A       W  +G
Sbjct:  954 KSCPSCTMLIEKDVGCNHMECTRCRMHFCWECGYQSKERAELYRHLGEAHGSYGGGWQIQG 1014          
BLAST of mRNA_M-pyrifera_M_contig96681.22266.1 vs. uniprot
Match: A0A2A2LJX9_9BILA (RBR-type E3 ubiquitin transferase n=1 Tax=Diploscapter pachys TaxID=2018661 RepID=A0A2A2LJX9_9BILA)

HSP 1 Score: 60.1 bits (144), Expect = 6.490e-9
Identity = 23/61 (37.70%), Postives = 34/61 (55.74%), Query Frame = 1
Query:   10 KVCPGCGIGVFRTTGCDHIECTSCHCHFCYQCGFTAPSSGAIYAHLGHAGACVPRDWWREG 192
            K CP C + + +  GC+H+ECT C  HFC++CG+ +     +Y HLG A       W  +G
Sbjct:  910 KSCPSCTMLIEKDVGCNHMECTKCRIHFCWECGYQSKERAELYRHLGDAHGGFGGGWQIQG 970          
BLAST of mRNA_M-pyrifera_M_contig96681.22266.1 vs. uniprot
Match: A0A836BAJ2_9CHLO (RING-type domain-containing protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A836BAJ2_9CHLO)

HSP 1 Score: 58.2 bits (139), Expect = 3.100e-8
Identity = 22/47 (46.81%), Postives = 33/47 (70.21%), Query Frame = 1
Query:   10 KVCPGCGIGVFRTTGCDHIECTSCHCHFCYQCG-FTAPSSGAIYAHL 147
            K CPGCG+   +  GC+HI C++C  H+CY+CG F+A  +G +Y H+
Sbjct:  931 KPCPGCGVHTQKDGGCNHITCSACAKHWCYECGAFSADEAGEVYEHM 977          
BLAST of mRNA_M-pyrifera_M_contig96681.22266.1 vs. uniprot
Match: A0A2A2KH33_9BILA (RBR-type E3 ubiquitin transferase n=1 Tax=Diploscapter pachys TaxID=2018661 RepID=A0A2A2KH33_9BILA)

HSP 1 Score: 57.8 bits (138), Expect = 4.220e-8
Identity = 22/61 (36.07%), Postives = 33/61 (54.10%), Query Frame = 1
Query:   10 KVCPGCGIGVFRTTGCDHIECTSCHCHFCYQCGFTAPSSGAIYAHLGHAGACVPRDWWREG 192
            K CP C + + +  GC+H++CT C  HFC++CG+ +     +Y HLG A       W   G
Sbjct:  706 KSCPSCTMLIEKDVGCNHMKCTKCRIHFCWECGYQSKERAELYRHLGDAHGGFGGGWQIRG 766          
BLAST of mRNA_M-pyrifera_M_contig96681.22266.1 vs. uniprot
Match: A0A8B6CX42_MYTGA (ATP-dependent RNA helicase DHX8/PRP22 n=1 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6CX42_MYTGA)

HSP 1 Score: 57.8 bits (138), Expect = 4.290e-8
Identity = 23/46 (50.00%), Postives = 30/46 (65.22%), Query Frame = 1
Query:   10 KVCPGCGIGVFRTTGCDHIECTSCHCHFCYQCGFTAPSSGAIYAHL 147
            K+CPGCG+ + ++ GCDH+ CT C  HFC+ C     SSG  Y HL
Sbjct: 3016 KLCPGCGLPIEKSYGCDHMTCTKCRRHFCWICLAHFSSSGDCYGHL 3061          
BLAST of mRNA_M-pyrifera_M_contig96681.22266.1 vs. uniprot
Match: A0A1Y2FUG0_PROLT (RING-type domain-containing protein n=1 Tax=Protomyces lactucae-debilis TaxID=2754530 RepID=A0A1Y2FUG0_PROLT)

HSP 1 Score: 52.8 bits (125), Expect = 1.970e-7
Identity = 22/53 (41.51%), Postives = 29/53 (54.72%), Query Frame = 1
Query:   16 CPGCGIGVFRTTGCDHIECTSCHCHFCYQCGFTAPSSGAIYAHLGHAGACVPR 174
            CP C   V + +GC+H+ C+ C CHFC+ CG + P     Y H G   AC  R
Sbjct:   18 CPSCESWVQKASGCNHMSCSVCRCHFCFLCGESLPVKNP-YLHYGKGMACAGR 69          
BLAST of mRNA_M-pyrifera_M_contig96681.22266.1 vs. uniprot
Match: A0A5A8D6U5_CAFRO (RING-type domain-containing protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8D6U5_CAFRO)

HSP 1 Score: 55.8 bits (133), Expect = 2.020e-7
Identity = 30/67 (44.78%), Postives = 40/67 (59.70%), Query Frame = 1
Query:   10 KVCPGCGIGVFRTTGCDHIECTSCHCHFCYQCGFT---APSSGAIYAHLGHAGACVPRDWWREGGGE 201
            ++CPGCG+ V +T GCDHI C  C  H+C+ CGF    + S   +YAH+  A    P  WW +G GE
Sbjct:  850 RLCPGCGMHVQKTEGCDHITCR-CGSHWCFLCGFPWQRSDSPDLVYAHIRTARHGDPV-WW-DGAGE 913          
BLAST of mRNA_M-pyrifera_M_contig96681.22266.1 vs. uniprot
Match: A0A5A8C7V9_CAFRO (Uncharacterized protein n=5 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8C7V9_CAFRO)

HSP 1 Score: 55.8 bits (133), Expect = 2.050e-7
Identity = 30/67 (44.78%), Postives = 40/67 (59.70%), Query Frame = 1
Query:   10 KVCPGCGIGVFRTTGCDHIECTSCHCHFCYQCGFT---APSSGAIYAHLGHAGACVPRDWWREGGGE 201
            ++CPGCG+ V +T GCDHI C  C  H+C+ CGF    + S   +YAH+  A    P  WW +G GE
Sbjct: 2678 RLCPGCGMHVQKTEGCDHITCR-CGSHWCFLCGFPWQRSDSPDLVYAHIRTARHGDPV-WW-DGAGE 2741          
BLAST of mRNA_M-pyrifera_M_contig96681.22266.1 vs. uniprot
Match: A0A146KDL1_9EUKA (IBR domain-containing protein (Fragment) n=1 Tax=Trepomonas sp. PC1 TaxID=1076344 RepID=A0A146KDL1_9EUKA)

HSP 1 Score: 55.5 bits (132), Expect = 2.720e-7
Identity = 25/61 (40.98%), Postives = 34/61 (55.74%), Query Frame = 1
Query:   10 KVCPGCGIGVFRTTGCDHIECTSCHCHFCYQCGFTA-PSSGAIYAHLGHAGACVPRDWWRE 189
            K CP C   +++T GC+HIECT C  HFCY C   A  +S  +Y H+      V +DW + 
Sbjct:  496 KKCPSCETPIYKTGGCNHIECTVCRKHFCYICANIAYKTSSEVYGHMTE----VHKDWMQS 552          
BLAST of mRNA_M-pyrifera_M_contig96681.22266.1 vs. uniprot
Match: A0A166RAR7_9AGAM (Uncharacterized protein n=1 Tax=Fibularhizoctonia sp. CBS 109695 TaxID=436010 RepID=A0A166RAR7_9AGAM)

HSP 1 Score: 55.5 bits (132), Expect = 2.790e-7
Identity = 20/46 (43.48%), Postives = 26/46 (56.52%), Query Frame = 1
Query:   10 KVCPGCGIGVFRTTGCDHIECTSCHCHFCYQCGFTAPSSGAIYAHL 147
            K CPGC   + R  GC+H+ CT C  H C++C  T P    IY H+
Sbjct: 1481 KACPGCKASIERIAGCNHMTCTRCQTHICWECSQTFPKGEGIYQHM 1526          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig96681.22266.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2A2L220_9BILA3.470e-937.70RBR-type E3 ubiquitin transferase n=1 Tax=Diplosca... [more]
A0A2A2LJX9_9BILA6.490e-937.70RBR-type E3 ubiquitin transferase n=1 Tax=Diplosca... [more]
A0A836BAJ2_9CHLO3.100e-846.81RING-type domain-containing protein n=1 Tax=Chlamy... [more]
A0A2A2KH33_9BILA4.220e-836.07RBR-type E3 ubiquitin transferase n=1 Tax=Diplosca... [more]
A0A8B6CX42_MYTGA4.290e-850.00ATP-dependent RNA helicase DHX8/PRP22 n=1 Tax=Myti... [more]
A0A1Y2FUG0_PROLT1.970e-741.51RING-type domain-containing protein n=1 Tax=Protom... [more]
A0A5A8D6U5_CAFRO2.020e-744.78RING-type domain-containing protein n=1 Tax=Cafete... [more]
A0A5A8C7V9_CAFRO2.050e-744.78Uncharacterized protein n=5 Tax=Cafeteria roenberg... [more]
A0A146KDL1_9EUKA2.720e-740.98IBR domain-containing protein (Fragment) n=1 Tax=T... [more]
A0A166RAR7_9AGAM2.790e-743.48Uncharacterized protein n=1 Tax=Fibularhizoctonia ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig96681contigM-pyrifera_M_contig96681:469..672 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size204
Cds size204
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816881.704234-CDS-M-pyrifera_M_contig96681:468..6721622816881.704234-CDS-M-pyrifera_M_contig96681:468..672Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig96681 469..672 +
1692278233.8413928-CDS-M-pyrifera_M_contig96681:468..6721692278233.8413928-CDS-M-pyrifera_M_contig96681:468..672Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig96681 469..672 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig96681.22266.1prot_M-pyrifera_M_contig96681.22266.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig96681 469..672 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig96681.22266.1

>prot_M-pyrifera_M_contig96681.22266.1 ID=prot_M-pyrifera_M_contig96681.22266.1|Name=mRNA_M-pyrifera_M_contig96681.22266.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=68bp
AGGKVCPGCGIGVFRTTGCDHIECTSCHCHFCYQCGFTAPSSGAIYAHLG
HAGACVPRDWWREGGGE*
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mRNA from alignment at M-pyrifera_M_contig96681:469..672+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig96681.22266.1 ID=mRNA_M-pyrifera_M_contig96681.22266.1|Name=mRNA_M-pyrifera_M_contig96681.22266.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=204bp|location=Sequence derived from alignment at M-pyrifera_M_contig96681:469..672+ (Macrocystis pyrifera P11B4 male)
GCAGGTGGAAAAGTTTGTCCTGGTTGTGGTATTGGAGTGTTTCGTACTAC AGGTTGTGACCACATCGAATGCACAAGTTGCCACTGCCATTTCTGCTACC AATGTGGCTTCACAGCCCCCAGCAGCGGGGCAATCTACGCCCACCTTGGC CACGCTGGAGCTTGCGTTCCACGAGACTGGTGGCGGGAAGGAGGAGGGGA ATGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig96681:469..672+

>mRNA_M-pyrifera_M_contig96681.22266.1 ID=mRNA_M-pyrifera_M_contig96681.22266.1|Name=mRNA_M-pyrifera_M_contig96681.22266.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=408bp|location=Sequence derived from alignment at M-pyrifera_M_contig96681:469..672+ (Macrocystis pyrifera P11B4 male)
GCAGGTGGAAAAGTTTGTCCTGGTTGTGGTATTGGAGTGTTTCGTACTAC
AGGTTGTGACCACATCGAATGCACAAGTTGCCACTGCCATTTCTGCTACC
AATGTGGCTTCACAGCCCCCAGCAGCGGGGCAATCTACGCCCACCTTGGC
CACGCTGGAGCTTGCGTTCCACGAGACTGGTGGCGGGAAGGAGGAGGGGA
ATGAGCAGGTGGAAAAGTTTGTCCTGGTTGTGGTATTGGAGTGTTTCGTA
CTACAGGTTGTGACCACATCGAATGCACAAGTTGCCACTGCCATTTCTGC
TACCAATGTGGCTTCACAGCCCCCAGCAGCGGGGCAATCTACGCCCACCT
TGGCCACGCTGGAGCTTGCGTTCCACGAGACTGGTGGCGGGAAGGAGGAG
GGGAATGA
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