mRNA_M-pyrifera_M_contig96664.22260.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig96664.22260.1
Unique NamemRNA_M-pyrifera_M_contig96664.22260.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig96664.22260.1 vs. uniprot
Match: A0A7S4IC60_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4IC60_9EUKA)

HSP 1 Score: 114 bits (286), Expect = 1.050e-25
Identity = 69/216 (31.94%), Postives = 114/216 (52.78%), Query Frame = 1 
Query:   19 WKERENRLRFLRLVEKKYGIEKASDWKQVKVKDLQALGGGGLLASYGG--SITKVLLDTYEGLEETDCRQQMPTGYWEKKENRRRFMDGIAKELGIQGPRDWAAVPVKEVMDRNGSALLSRYNYSLFDALKDLYPEVTDEEVFLFRNVVPRSFWREEDNVRQFLLSLKESLGVRSIDDWGRVSVQQVRD-HNGNGLLEAM-PLRDALRLAFPKERW 654
            W++ +++  FL  V     I    +WK V  + ++ALGGG LL  Y       + L   +  +    C++ +P G+W K +NRR F+D +A++ GI  PRDWA V V  +    GSALL  Y+ S++D L+ +YPE  + + FL    +P  +W +  NVR F+  + +   +   D+W  +    + D + G  LL+    L + L++A+P E W
Sbjct:  283 WRDTKHQRAFLDQVAATLNITSPEEWKLVTPQQIKALGGGKLLLYYPSLYDALRTLYPEHNWVIGDTCKR-IPRGHWNKHDNRRAFLDSLARKFGIASPRDWANVSVHMIRKFGGSALLKTYS-SMYDMLRSVYPE-QNFDFFLDGQQLPNYYWNDPANVRSFISYVSKKRDIELKDEWFDLPDSALTDVYGGTALLQKYGSLINILQIAYPDEVW 495
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BLAST of mRNA_M-pyrifera_M_contig96664.22260.1 vs. uniprot
Match: A0A356A8Y8_9PLAN (Uncharacterized protein n=3 Tax=Planctomycetaceae TaxID=126 RepID=A0A356A8Y8_9PLAN)

HSP 1 Score: 80.1 bits (196), Expect = 1.630e-14
Identity = 49/154 (31.82%), Postives = 84/154 (54.55%), Query Frame = 1 
Query:  223 QMPTGYWEKKENRRRFMDGIAKELGIQGPRDWAAVPVKEVMDRNGSALLSRYNY-SLFDALKDLYPEVTDEEVFLFRNVVPRSFWREEDNVRQFLLSLKESLGVRSIDDWGRVSVQQVRDHNGNGLLEAM---PLRDALRLAFPKERWGSVEFV 672
            ++P+GYW++  NR+ +M  +AKELG +   DW  +  ++   R G  LL+ Y + S   A+   +PE  +   +LFR+   + FW+++ N   ++  L E LG++S++DW +VS      +NG G+L       +  ALR   PK++W    F 
Sbjct:   14 RVPSGYWDRVINRKAYMRWLAKELGYKKTEDWYQISKQDFHVRFGGGLLANYYHDSPQQAVMAHFPE-HEWRPWLFRST-SQGFWQDKKNRLAYMEWLGEHLGLKSLEDWYKVSRSHFHTNNGGGMLANYYGDSVFRALREFAPKKKWVPWRFA 165
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BLAST of mRNA_M-pyrifera_M_contig96664.22260.1 vs. uniprot
Match: F0SPX8_RUBBR (Uncharacterized protein n=3 Tax=Planctomycetaceae TaxID=126 RepID=F0SPX8_RUBBR)

HSP 1 Score: 79.0 bits (193), Expect = 6.900e-14
Identity = 47/150 (31.33%), Postives = 79/150 (52.67%), Query Frame = 1 
Query:  217 RQQMPTGYWEKKENRRRFMDGIAKELGIQGPRDWAAVPVKEVMDRNGSALLSRY-NYSLFDALKDLYPEVTDEEVFLFRNVVPRSFWREEDNVRQFLLSLKESLGVRSIDDWGRVSVQQVRDHNGNGLLEAM---PLRDALRLAFPKERW 654
            R ++P+GYW++ ENRR +M  + K LG +   DW  +  ++     G  L++ Y   S   A+ D  P+      +LFR+  P+ FW+ + N   ++  L E+LG++S+DDW  VS      H G G+L       +  AL+   P+++W
Sbjct:   46 RGRVPSGYWDRVENRRAYMKWLGKTLGFRKAADWYNISKQDFHCNFGGGLIANYYRDSPQQAVIDYLPD-HPWRGWLFRST-PQGFWQSKQNRMDYMDWLGETLGLKSLDDWYHVSRSHFHTHRGGGMLANYYGDSVFRALKEYAPRKKW 193
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BLAST of mRNA_M-pyrifera_M_contig96664.22260.1 vs. uniprot
Match: A0A7S4MPE1_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4MPE1_9EUKA)

HSP 1 Score: 64.7 bits (156), Expect = 1.210e-8
Identity = 38/126 (30.16%), Postives = 59/126 (46.83%), Query Frame = 1 
Query:  280 IAKELGIQGPRDWAAVPVKEVMDRNGSALLSRYNYSLFDALKDLYPEVTDEEVFLFRNVVPRSFWREEDNVRQFLLSLKESLGVRSIDDWGRVSVQQVRDHNGNGLLEAMP-LRDALRLAFPKERW 654
             A+E  I  P DWA +  K+V +  G  LL  Y  SL  AL                 ++PR++W   +N RQFL        + S  DW  ++ +Q+ D  G  +L+  P L +AL+  +P+ +W
Sbjct:    2 FARENNIYTPSDWAKITDKQVAEAGGEFLLLHYA-SLASALP----------------IIPRNYWSNVENQRQFLDEFARQHNLESPTDWSNITYRQIADAGGATILQHYPSLFEALKSIYPEHKW 110
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BLAST of mRNA_M-pyrifera_M_contig96664.22260.1 vs. uniprot
Match: A0A151Z8R6_9MYCE (Uncharacterized protein n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151Z8R6_9MYCE)

HSP 1 Score: 54.3 bits (129), Expect = 5.110e-5
Identity = 32/134 (23.88%), Postives = 69/134 (51.49%), Query Frame = 1 
Query:  235 GYWEKKENRRRFMDGIAKELGIQGPRD-----------WAAVPVKEVMDRNGSALLSRYNYSLFDALKDLYPEVTDEEVFLFRNVVPRSFWREEDNVRQFLLSLKESLGVRSIDDWGRVSVQQVRDHNGNGLLE 603
            G+W  K+N+  ++  + ++L ++   +           W  V   +  D  G  LL  YN S+++ L++LYP+  +   + F++  P++ W++ +N ++++  L + L   + + W  VS Q    ++G GLL+
Sbjct:   10 GHWLNKDNQLEYLSWLFEKLSMRYQTEDKVKDDRYFEQWYKVQKSDFSDNGGRGLLLIYNDSVYNLLRNLYPQY-EWLPWKFKST-PKNIWKDMENQQRYMKWLGDKLNYVTSNQWYGVSKQDFIQNHGYGLLQ 141
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig96664.22260.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A7S4IC60_9EUKA1.050e-2531.94Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
A0A356A8Y8_9PLAN1.630e-1431.82Uncharacterized protein n=3 Tax=Planctomycetaceae ... [more]
F0SPX8_RUBBR6.900e-1431.33Uncharacterized protein n=3 Tax=Planctomycetaceae ... [more]
A0A7S4MPE1_9EUKA1.210e-830.16Hypothetical protein (Fragment) n=1 Tax=Vannella s... [more]
A0A151Z8R6_9MYCE5.110e-523.88Uncharacterized protein n=1 Tax=Tieghemostelium la... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig96664contigM-pyrifera_M_contig96664:7..693 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size687
Cds size687
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816881.4759974-CDS-M-pyrifera_M_contig96664:6..6931622816881.4759974-CDS-M-pyrifera_M_contig96664:6..693Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig96664 7..693 -
1692278233.751779-CDS-M-pyrifera_M_contig96664:6..6931692278233.751779-CDS-M-pyrifera_M_contig96664:6..693Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig96664 7..693 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig96664.22260.1prot_M-pyrifera_M_contig96664.22260.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig96664 7..693 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig96664.22260.1

>prot_M-pyrifera_M_contig96664.22260.1 ID=prot_M-pyrifera_M_contig96664.22260.1|Name=mRNA_M-pyrifera_M_contig96664.22260.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=229bp
RQAKGHWKERENRLRFLRLVEKKYGIEKASDWKQVKVKDLQALGGGGLLA
SYGGSITKVLLDTYEGLEETDCRQQMPTGYWEKKENRRRFMDGIAKELGI
QGPRDWAAVPVKEVMDRNGSALLSRYNYSLFDALKDLYPEVTDEEVFLFR
NVVPRSFWREEDNVRQFLLSLKESLGVRSIDDWGRVSVQQVRDHNGNGLL
EAMPLRDALRLAFPKERWGSVEFVKSQGK
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mRNA from alignment at M-pyrifera_M_contig96664:7..693-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig96664.22260.1 ID=mRNA_M-pyrifera_M_contig96664.22260.1|Name=mRNA_M-pyrifera_M_contig96664.22260.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=687bp|location=Sequence derived from alignment at M-pyrifera_M_contig96664:7..693- (Macrocystis pyrifera P11B4 male)
CGGCAGGCGAAGGGGCACTGGAAAGAGAGGGAGAATCGCCTCCGGTTCCT
CAGGCTCGTGGAGAAGAAGTACGGCATCGAGAAGGCCAGCGACTGGAAGC
AGGTCAAGGTGAAGGACCTCCAGGCGCTGGGGGGAGGCGGCCTCCTCGCC
AGCTACGGTGGATCGATCACAAAGGTGCTCCTCGACACCTACGAGGGGTT
GGAGGAGACGGACTGCCGCCAGCAGATGCCCACGGGCTACTGGGAGAAGA
AGGAGAACCGGAGGAGGTTCATGGACGGCATTGCCAAGGAGCTGGGCATC
CAGGGGCCCAGAGACTGGGCGGCTGTGCCCGTCAAGGAGGTGATGGACAG
GAACGGCAGCGCACTGCTCAGCAGGTACAACTACAGCCTCTTCGACGCAC
TCAAAGACCTCTACCCCGAGGTGACCGACGAGGAGGTGTTTCTCTTTCGT
AACGTCGTGCCACGCTCGTTCTGGAGAGAGGAAGATAACGTGAGGCAGTT
CCTTCTCTCGCTCAAGGAGTCGCTCGGCGTTCGGTCCATCGACGACTGGG
GGAGGGTGTCGGTGCAGCAGGTGCGCGACCACAACGGCAATGGCCTCCTC
GAGGCAATGCCGCTGCGTGACGCCCTCCGCCTTGCCTTTCCCAAGGAGCG
GTGGGGCAGCGTGGAGTTTGTGAAGAGTCAGGGCAAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig96664:7..693-

>mRNA_M-pyrifera_M_contig96664.22260.1 ID=mRNA_M-pyrifera_M_contig96664.22260.1|Name=mRNA_M-pyrifera_M_contig96664.22260.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1374bp|location=Sequence derived from alignment at M-pyrifera_M_contig96664:7..693- (Macrocystis pyrifera P11B4 male)
CGGCAGGCGAAGGGGCACTGGAAAGAGAGGGAGAATCGCCTCCGGTTCCT
CAGGCTCGTGGAGAAGAAGTACGGCATCGAGAAGGCCAGCGACTGGAAGC
AGGTCAAGGTGAAGGACCTCCAGGCGCTGGGGGGAGGCGGCCTCCTCGCC
AGCTACGGTGGATCGATCACAAAGGTGCTCCTCGACACCTACGAGGGGTT
GGAGGAGACGGACTGCCGCCAGCAGATGCCCACGGGCTACTGGGAGAAGA
AGGAGAACCGGAGGAGGTTCATGGACGGCATTGCCAAGGAGCTGGGCATC
CAGGGGCCCAGAGACTGGGCGGCTGTGCCCGTCAAGGAGGTGATGGACAG
GAACGGCAGCGCACTGCTCAGCAGGTACAACTACAGCCTCTTCGACGCAC
TCAAAGACCTCTACCCCGAGGTGACCGACGAGGAGGTGTTTCTCTTTCGT
AACGTCGTGCCACGCTCGTTCTGGAGAGAGGAAGATAACGTGAGGCAGTT
CCTTCTCTCGCTCAAGGAGTCGCTCGGCGTTCGGTCCATCGACGACTGGG
GGAGGGTGTCGGTGCAGCAGGTGCGCGACCACAACGGCAATGGCCTCCTC
GAGGCAATGCCGCTGCGTGACGCCCTCCGCCTTGCCTTTCCCAAGGAGCG
GTGGGGCAGCGTGGAGTTTGTGAAGAGTCAGGGCAAGCGGCAGGCGAAGG
GGCACTGGAAAGAGAGGGAGAATCGCCTCCGGTTCCTCAGGCTCGTGGAG
AAGAAGTACGGCATCGAGAAGGCCAGCGACTGGAAGCAGGTCAAGGTGAA
GGACCTCCAGGCGCTGGGGGGAGGCGGCCTCCTCGCCAGCTACGGTGGAT
CGATCACAAAGGTGCTCCTCGACACCTACGAGGGGTTGGAGGAGACGGAC
TGCCGCCAGCAGATGCCCACGGGCTACTGGGAGAAGAAGGAGAACCGGAG
GAGGTTCATGGACGGCATTGCCAAGGAGCTGGGCATCCAGGGGCCCAGAG
ACTGGGCGGCTGTGCCCGTCAAGGAGGTGATGGACAGGAACGGCAGCGCA
CTGCTCAGCAGGTACAACTACAGCCTCTTCGACGCACTCAAAGACCTCTA
CCCCGAGGTGACCGACGAGGAGGTGTTTCTCTTTCGTAACGTCGTGCCAC
GCTCGTTCTGGAGAGAGGAAGATAACGTGAGGCAGTTCCTTCTCTCGCTC
AAGGAGTCGCTCGGCGTTCGGTCCATCGACGACTGGGGGAGGGTGTCGGT
GCAGCAGGTGCGCGACCACAACGGCAATGGCCTCCTCGAGGCAATGCCGC
TGCGTGACGCCCTCCGCCTTGCCTTTCCCAAGGAGCGGTGGGGCAGCGTG
GAGTTTGTGAAGAGTCAGGGCAAG
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