mRNA_M-pyrifera_M_contig96191.22170.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig96191.22170.1
Unique NamemRNA_M-pyrifera_M_contig96191.22170.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig96191.22170.1 vs. uniprot
Match: A0A2K1KX00_PHYPA (Anaphase-promoting complex subunit 5 n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1KX00_PHYPA)

HSP 1 Score: 58.9 bits (141), Expect = 2.160e-7
Identity = 41/123 (33.33%), Postives = 61/123 (49.59%), Query Frame = 1 
Query:   25 IEELRRMAPKVSAVHYLALVFEIQRRNVSNARDELHRYFDHQVYEHATRKRDRGANSNGKEGARRSSLL---PFALLNLASLHFLFSDYDEGVQAVSEAVRLAQASSDQGVLAVGLTWLHRLL 384
            + +L ++AP +  VHYL  +  +Q+ +     D+LHRYFD+            G       GA   S +      LL+L S+H  F   D+ +QA++EAVR+AQ  +D   LA  L  L  LL
Sbjct:  287 LTQLEKLAPDMMKVHYLRYLNHLQQSDYPATMDDLHRYFDYSA----------GMGGMSVGGASCDSSVGRFQAGLLSLGSMHAHFGHVDQAMQALNEAVRIAQQYNDDACLAHALAALCHLL 399
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig96191.22170.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2K1KX00_PHYPA2.160e-733.33Anaphase-promoting complex subunit 5 n=2 Tax=Physc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig96191contigM-pyrifera_M_contig96191:6..425 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score77.4
Seed ortholog evalue5.9e-12
Seed eggNOG ortholog5786.XP_003292959.1
Preferred nameAPC5
KEGG koko:K03352
KEGG Pathwayko04110,ko04111,ko04113,ko04114,ko04120,ko04657,ko04914,ko05166,map04110,map04111,map04113,map04114,map04120,map04657,map04914,map05166
KEGG ModuleM00389
Hectar predicted targeting categoryother localisation
GOsGO:0000151,GO:0000152,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005680,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0007088,GO:0007346,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009896,GO:0009987,GO:0010498,GO:0010564,GO:0010638,GO:0010965,GO:0016567,GO:0019538,GO:0019941,GO:0030071,GO:0030163,GO:0031145,GO:0031331,GO:0031461,GO:0032270,GO:0032436,GO:0032446,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0036211,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045732,GO:0045787,GO:0045840,GO:0045842,GO:0045862,GO:0045931,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051128,GO:0051130,GO:0051247,GO:0051603,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0062033,GO:0065007,GO:0070647,GO:0071704,GO:0090068,GO:1901564,GO:1901565,GO:1901575,GO:1901800,GO:1901970,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902494,GO:1903052,GO:1903364,GO:1905818,GO:1905820,GO:1990234,GO:2001252
EggNOG free text desc.Anaphase-promoting complex subunit 5
EggNOG OGs3XC6A@554915,KOG4322@1,KOG4322@2759
COG Functional cat.DO
Best tax levelAmoebozoa
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03036,ko04121
Exons1
Model size420
Cds size420
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816877.143237-CDS-M-pyrifera_M_contig96191:5..4251622816877.143237-CDS-M-pyrifera_M_contig96191:5..425Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig96191 6..425 -
1692278231.3244622-CDS-M-pyrifera_M_contig96191:5..4251692278231.3244622-CDS-M-pyrifera_M_contig96191:5..425Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig96191 6..425 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig96191.22170.1prot_M-pyrifera_M_contig96191.22170.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig96191 6..425 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig96191.22170.1

>prot_M-pyrifera_M_contig96191.22170.1 ID=prot_M-pyrifera_M_contig96191.22170.1|Name=mRNA_M-pyrifera_M_contig96191.22170.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=140bp
TEREISRRIEELRRMAPKVSAVHYLALVFEIQRRNVSNARDELHRYFDHQ
VYEHATRKRDRGANSNGKEGARRSSLLPFALLNLASLHFLFSDYDEGVQA
VSEAVRLAQASSDQGVLAVGLTWLHRLLQQQMGTSRGESS
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mRNA from alignment at M-pyrifera_M_contig96191:6..425-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig96191.22170.1 ID=mRNA_M-pyrifera_M_contig96191.22170.1|Name=mRNA_M-pyrifera_M_contig96191.22170.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=420bp|location=Sequence derived from alignment at M-pyrifera_M_contig96191:6..425- (Macrocystis pyrifera P11B4 male)
ACTGAGAGAGAAATCAGTAGGAGAATTGAAGAGCTCAGAAGAATGGCACC
AAAGGTCTCTGCTGTGCATTACCTCGCGCTGGTGTTCGAGATCCAGAGAA
GAAATGTCTCAAATGCGCGAGACGAGCTTCACCGCTACTTCGACCACCAA
GTCTACGAGCATGCGACGAGGAAGAGAGACAGAGGAGCCAACAGCAATGG
CAAAGAAGGTGCCAGGCGCTCGAGTCTTCTCCCTTTCGCTCTGCTCAACC
TTGCGTCGCTCCACTTTCTCTTCTCGGATTATGACGAGGGAGTACAGGCT
GTCAGCGAGGCTGTCAGGCTTGCACAGGCAAGTAGTGATCAAGGAGTGCT
TGCTGTGGGCCTCACCTGGCTCCATCGTCTCCTCCAGCAGCAGATGGGCA
CTTCACGAGGGGAGAGCTCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig96191:6..425-

>mRNA_M-pyrifera_M_contig96191.22170.1 ID=mRNA_M-pyrifera_M_contig96191.22170.1|Name=mRNA_M-pyrifera_M_contig96191.22170.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=840bp|location=Sequence derived from alignment at M-pyrifera_M_contig96191:6..425- (Macrocystis pyrifera P11B4 male)
ACTGAGAGAGAAATCAGTAGGAGAATTGAAGAGCTCAGAAGAATGGCACC
AAAGGTCTCTGCTGTGCATTACCTCGCGCTGGTGTTCGAGATCCAGAGAA
GAAATGTCTCAAATGCGCGAGACGAGCTTCACCGCTACTTCGACCACCAA
GTCTACGAGCATGCGACGAGGAAGAGAGACAGAGGAGCCAACAGCAATGG
CAAAGAAGGTGCCAGGCGCTCGAGTCTTCTCCCTTTCGCTCTGCTCAACC
TTGCGTCGCTCCACTTTCTCTTCTCGGATTATGACGAGGGAGTACAGGCT
GTCAGCGAGGCTGTCAGGCTTGCACAGGCAAGTAGTGATCAAGGAGTGCT
TGCTGTGGGCCTCACCTGGCTCCATCGTCTCCTCCAGCAGCAGATGGGCA
CTTCACGAGGGGAGAGCTCCACTGAGAGAGAAATCAGTAGGAGAATTGAA
GAGCTCAGAAGAATGGCACCAAAGGTCTCTGCTGTGCATTACCTCGCGCT
GGTGTTCGAGATCCAGAGAAGAAATGTCTCAAATGCGCGAGACGAGCTTC
ACCGCTACTTCGACCACCAAGTCTACGAGCATGCGACGAGGAAGAGAGAC
AGAGGAGCCAACAGCAATGGCAAAGAAGGTGCCAGGCGCTCGAGTCTTCT
CCCTTTCGCTCTGCTCAACCTTGCGTCGCTCCACTTTCTCTTCTCGGATT
ATGACGAGGGAGTACAGGCTGTCAGCGAGGCTGTCAGGCTTGCACAGGCA
AGTAGTGATCAAGGAGTGCTTGCTGTGGGCCTCACCTGGCTCCATCGTCT
CCTCCAGCAGCAGATGGGCACTTCACGAGGGGAGAGCTCC
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