mRNA_M-pyrifera_M_contig95933.22115.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig95933.22115.1
Unique NamemRNA_M-pyrifera_M_contig95933.22115.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig95933.22115.1 vs. uniprot
Match: A0A2E7KMS8_9PLAN (Uncharacterized protein n=5 Tax=Gimesia TaxID=1649453 RepID=A0A2E7KMS8_9PLAN)

HSP 1 Score: 245 bits (626), Expect = 1.370e-81
Identity = 134/145 (92.41%), Postives = 138/145 (95.17%), Query Frame = 1 
Query:    1 MNLSPATEKQYITNISRLSRFTGGYCLFFGTVLFVVSLVMHPTILIGAVLHLITGLLYFLLSKGIQQRSERSIAALTLFSVVLTAASFTAILYLVLEDWNIPALIGLTIFLIINLQLFIELILWKRFRRRLSSKQESQSQESPPN 435
            MNLS ATEKQYI NIS LS FTGGYCLFFGTVLF VSLV+HPTILIGAVLHLITGLLYFLL+KGIQQRSERSI+ALTLFSV LTAASFTAILYLVLEDWNIPALIGLTIFLIINLQLFIELILWKR RRRLSSKQESQSQ+SPPN
Sbjct:    1 MNLSSATEKQYIKNISILSCFTGGYCLFFGTVLFAVSLVIHPTILIGAVLHLITGLLYFLLAKGIQQRSERSISALTLFSVGLTAASFTAILYLVLEDWNIPALIGLTIFLIINLQLFIELILWKRLRRRLSSKQESQSQDSPPN 145
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BLAST of mRNA_M-pyrifera_M_contig95933.22115.1 vs. uniprot
Match: A0A517WB23_9PLAN (Uncharacterized protein n=1 Tax=Gimesia chilikensis TaxID=2605989 RepID=A0A517WB23_9PLAN)

HSP 1 Score: 238 bits (606), Expect = 1.540e-78
Identity = 128/142 (90.14%), Postives = 134/142 (94.37%), Query Frame = 1 
Query:    1 MNLSPATEKQYITNISRLSRFTGGYCLFFGTVLFVVSLVMHPTILIGAVLHLITGLLYFLLSKGIQQRSERSIAALTLFSVVLTAASFTAILYLVLEDWNIPALIGLTIFLIINLQLFIELILWKRFRRRLSSKQESQSQES 426
            MNLS ATEKQYITNISRLS FTGGYCLFFG VLF VSLVMHPTILIGAVLHLITGLLYFLL+KGIQQRSERSI+ALT FSV LTA SFTAILY+VL+DWNIPALIGLTIFLIINLQLFIELILWKR RRRLSS+Q+SQSQES
Sbjct:    1 MNLSSATEKQYITNISRLSLFTGGYCLFFGIVLFAVSLVMHPTILIGAVLHLITGLLYFLLAKGIQQRSERSISALTFFSVALTAVSFTAILYMVLDDWNIPALIGLTIFLIINLQLFIELILWKRLRRRLSSRQDSQSQES 142
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BLAST of mRNA_M-pyrifera_M_contig95933.22115.1 vs. uniprot
Match: A0A517V728_9PLAN (Uncharacterized protein n=1 Tax=Gimesia algae TaxID=2527971 RepID=A0A517V728_9PLAN)

HSP 1 Score: 180 bits (457), Expect = 8.070e-56
Identity = 97/147 (65.99%), Postives = 119/147 (80.95%), Query Frame = 1 
Query:    1 MNLSPATEKQYITNISRLSRFTGGYCLFFGTVLFVVSLVMHPTILIGAVLHLITGLLYFLLSKGIQQRSERSIAALTLFSVVLTAASFTAILYLVL--EDWNIPALIGLTIFLIINLQLFIELILWKRFRRRLSSKQESQSQESPPN 435
            M L+PATEK+++ NIS+L+RFTGGYCLFFG VLF+VSLV++P IL GAVLHLITGLL+ L + GI+QRS+RSI  LTLF+  L AAS  AIL+LVL   +WNIPALIGLTIF++INLQL +EL LWKR R+RLS+  ES+ Q    N
Sbjct:    1 MPLTPATEKKFVENISKLTRFTGGYCLFFGAVLFLVSLVLNPVILFGAVLHLITGLLFLLFANGIKQRSQRSILGLTLFAATLAAASSIAILFLVLIEANWNIPALIGLTIFMVINLQLLVELFLWKRLRKRLSATPESEPQAFTSN 147
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig95933.22115.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2E7KMS8_9PLAN1.370e-8192.41Uncharacterized protein n=5 Tax=Gimesia TaxID=1649... [more]
A0A517WB23_9PLAN1.540e-7890.14Uncharacterized protein n=1 Tax=Gimesia chilikensi... [more]
A0A517V728_9PLAN8.070e-5665.99Uncharacterized protein n=1 Tax=Gimesia algae TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig95933contigM-pyrifera_M_contig95933:169..606 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size438
Cds size438
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816874.3236306-CDS-M-pyrifera_M_contig95933:168..6061622816874.3236306-CDS-M-pyrifera_M_contig95933:168..606Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig95933 169..606 +
1692278229.4787328-CDS-M-pyrifera_M_contig95933:168..6061692278229.4787328-CDS-M-pyrifera_M_contig95933:168..606Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig95933 169..606 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig95933.22115.1prot_M-pyrifera_M_contig95933.22115.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig95933 169..606 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig95933.22115.1

>prot_M-pyrifera_M_contig95933.22115.1 ID=prot_M-pyrifera_M_contig95933.22115.1|Name=mRNA_M-pyrifera_M_contig95933.22115.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=146bp
MNLSPATEKQYITNISRLSRFTGGYCLFFGTVLFVVSLVMHPTILIGAVL
HLITGLLYFLLSKGIQQRSERSIAALTLFSVVLTAASFTAILYLVLEDWN
IPALIGLTIFLIINLQLFIELILWKRFRRRLSSKQESQSQESPPN*
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mRNA from alignment at M-pyrifera_M_contig95933:169..606+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig95933.22115.1 ID=mRNA_M-pyrifera_M_contig95933.22115.1|Name=mRNA_M-pyrifera_M_contig95933.22115.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=438bp|location=Sequence derived from alignment at M-pyrifera_M_contig95933:169..606+ (Macrocystis pyrifera P11B4 male)
ATGAATCTGAGCCCTGCCACCGAAAAACAGTACATCACAAACATTTCGAG
ACTCAGCCGCTTTACGGGCGGTTACTGTCTGTTTTTTGGCACAGTTCTCT
TTGTAGTCAGCCTCGTAATGCACCCTACGATTCTGATTGGCGCGGTACTG
CATCTCATCACGGGCCTGCTCTACTTCCTGCTGTCGAAAGGGATTCAACA
GAGATCAGAACGGAGTATCGCCGCACTGACGCTTTTTTCTGTCGTCCTGA
CTGCAGCCAGTTTCACAGCCATTCTATATCTGGTCCTGGAGGACTGGAAT
ATACCGGCACTGATTGGACTGACGATCTTCCTGATCATCAATCTGCAGCT
CTTCATCGAACTGATCCTCTGGAAACGATTTCGCAGACGACTTTCCAGCA
AACAGGAAAGTCAGTCACAAGAATCACCCCCAAATTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig95933:169..606+

>mRNA_M-pyrifera_M_contig95933.22115.1 ID=mRNA_M-pyrifera_M_contig95933.22115.1|Name=mRNA_M-pyrifera_M_contig95933.22115.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=876bp|location=Sequence derived from alignment at M-pyrifera_M_contig95933:169..606+ (Macrocystis pyrifera P11B4 male)
ATGAATCTGAGCCCTGCCACCGAAAAACAGTACATCACAAACATTTCGAG
ACTCAGCCGCTTTACGGGCGGTTACTGTCTGTTTTTTGGCACAGTTCTCT
TTGTAGTCAGCCTCGTAATGCACCCTACGATTCTGATTGGCGCGGTACTG
CATCTCATCACGGGCCTGCTCTACTTCCTGCTGTCGAAAGGGATTCAACA
GAGATCAGAACGGAGTATCGCCGCACTGACGCTTTTTTCTGTCGTCCTGA
CTGCAGCCAGTTTCACAGCCATTCTATATCTGGTCCTGGAGGACTGGAAT
ATACCGGCACTGATTGGACTGACGATCTTCCTGATCATCAATCTGCAGCT
CTTCATCGAACTGATCCTCTGGAAACGATTTCGCAGACGACTTTCCAGCA
AACAGGAAAGTCAGTCACAAGAATCACCCCCAAATTAAATGAATCTGAGC
CCTGCCACCGAAAAACAGTACATCACAAACATTTCGAGACTCAGCCGCTT
TACGGGCGGTTACTGTCTGTTTTTTGGCACAGTTCTCTTTGTAGTCAGCC
TCGTAATGCACCCTACGATTCTGATTGGCGCGGTACTGCATCTCATCACG
GGCCTGCTCTACTTCCTGCTGTCGAAAGGGATTCAACAGAGATCAGAACG
GAGTATCGCCGCACTGACGCTTTTTTCTGTCGTCCTGACTGCAGCCAGTT
TCACAGCCATTCTATATCTGGTCCTGGAGGACTGGAATATACCGGCACTG
ATTGGACTGACGATCTTCCTGATCATCAATCTGCAGCTCTTCATCGAACT
GATCCTCTGGAAACGATTTCGCAGACGACTTTCCAGCAAACAGGAAAGTC
AGTCACAAGAATCACCCCCAAATTAA
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