mRNA_M-pyrifera_M_contig95761.22081.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig95761.22081.1
Unique NamemRNA_M-pyrifera_M_contig95761.22081.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig95761.22081.1 vs. uniprot
Match: A0A2P6TP50_CHLSO (ERAD-associated E3 ubiquitin-ligase HRD1B-like n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TP50_CHLSO)

HSP 1 Score: 115 bits (289), Expect = 1.170e-26
Identity = 62/177 (35.03%), Postives = 98/177 (55.37%), Query Frame = 1
Query:   13 EHGASVELLFAFECGVLALSLLLITLRFVLHQIDQRIEGQWLNKGTYLLFGSLLLNVLRLGLHVAYFAVVFYHYSAPLLMLRDLVNAFNAVMRNVINLRAAQQLRAKLQRRAWTIQQDDLDHIQDHMCSICRVDVTGDGDAVMLPCRHIYHVHCILPWFENSQTCPFCREAVAPDLP 543
                 V+LLFAFE  V A +++L  +++ L  +D  +EG+W  KG  + +  L L++L L ++ A+FAVVF  Y  PL ++RDL   F    + V +    +++ A + +      ++DL    DH+C ICR ++T  G    L C H++H+HC+  W E  Q CP CR +V P  P
Sbjct:  172 NRPVGVDLLFAFEYTVQASTIVLTFIKYCLSMVDIAMEGRWEGKGVAVFYLELTLDMLHLLVYCAFFAVVFSTYGIPLHLVRDLYWTFRNFNQRVRDFLRYRRITANMDQSFPDATEEDLQRA-DHVCIICREELTTQGRNKKLGCNHVFHLHCLRSWLERQQNCPICRRSVVPPTP 347          
BLAST of mRNA_M-pyrifera_M_contig95761.22081.1 vs. uniprot
Match: A0A4D9CLU7_9STRA (RING-type domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CLU7_9STRA)

HSP 1 Score: 110 bits (275), Expect = 8.460e-25
Identity = 61/175 (34.86%), Postives = 95/175 (54.29%), Query Frame = 1
Query:   19 GASVELLFAFECGVLALSLLLITLRFVLHQIDQRIEGQWLNKGTYLLFGSLLLNVLRLGLHVAYFAVVFYHYSAPLLMLRDLVNAFNAVMRNVINLRAAQQLRAKLQRRAWTIQQDDLDHIQDHMCSICRVDVTGDGDAVMLPCRHIYHVHCILPWFENSQTCPFCREAVAPDLP 543
            G SV +LF FE  +LA+S+    LR+ LH +D RIEG W  KG+YL F      V+R   +V +F+++F +Y  PL ++RDL  ++  + R ++     + L A +  R      ++L   + H C ICR  +     A  LPC HI+H+ C+  W +  Q+CP CR  +  + P
Sbjct:  166 GPSVLILFGFEYTILAVSVSSTLLRYCLHLVDMRIEGNWPQKGSYLFFLEFATEVVRFLSYVVFFSIIFTYYGMPLHIVRDLWMSYVNLKRRLVIFNKYRHLTANMNERFPDATSEELIGCE-HTCIICRDLMEAGPGAKKLPCSHIFHLDCLRLWLQQQQSCPTCRADIPTNSP 339          
BLAST of mRNA_M-pyrifera_M_contig95761.22081.1 vs. uniprot
Match: UPI001ED8BCD7 (E3 ubiquitin-protein ligase synoviolin B n=1 Tax=Ischnura elegans TaxID=197161 RepID=UPI001ED8BCD7)

HSP 1 Score: 100 bits (249), Expect = 2.500e-21
Identity = 59/173 (34.10%), Postives = 94/173 (54.34%), Query Frame = 1
Query:   10 LEHGASVELLFAFECGVLALSLLLITLRFVLHQIDQRIEGQWLNKGTYLLFGSLLLNVLRLGLHVAYFAVVFYHYSAPLLMLRDL---VNAFNAVMRNVINLRAAQQLRAKLQRRAWTIQQDDLDHIQDHMCSICRVDVTGDGDAVMLPCRHIYHVHCILPWFENSQTCPFCR 519
            +  GASV+L+F FE  +L   ++ IT++++LH IDQ  E  W NK  +LL+  L++  +++ L++ + A++   Y+ PL   R +   + AF     +VI  R A Q    L   A     ++L    D++C ICR ++        LPC HI+H  C+  WF+  QTCP CR
Sbjct:  166 MSKGASVQLVFGFEYAILLTIMINITIKYILHTIDQTSENPWENKAVFLLYTELVMGFIKVVLYLTFVAIMIRLYTLPLFAFRPMYYTMRAFKKAFNDVILSRRAIQNMNSLYPDATP---EEL-AAADNVCIICREEMVTASKK--LPCNHIFHTSCLRSWFQRQQTCPTCR 332          
BLAST of mRNA_M-pyrifera_M_contig95761.22081.1 vs. uniprot
Match: A0A0L0DFU9_THETB (E3 ubiquitin-protein ligase synoviolin-A n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DFU9_THETB)

HSP 1 Score: 99.4 bits (246), Expect = 6.430e-21
Identity = 60/171 (35.09%), Postives = 93/171 (54.39%), Query Frame = 1
Query:   10 LEHGASVELLFAFECGVLALSLLLITLRFVLHQIDQR-IEGQWLNKGTYLLFGSLLLNVLRLGLHVAYFAVVFYHYSAPLLMLRDLVNAFNAVMRNVINLRAAQQLRAKLQRRAWTIQQDDLDHIQDHMCSICRVDVTGDGDAVMLPCRHIYHVHCILPWFENSQTCPFCR 519
            L+ G S+ LLF FE  +L + ++ +   + LH  D   +EGQW NKG Y+L   +L    R   ++ +F VV ++YS P+ ML +L +++ A    V+     +++   L  R   +   DLD  +D MC++CRVDV    +   LPC H++H  C+  W E  Q CP CR
Sbjct:  163 LDKGPSLVLLFVFEYLILLVLVVEMLATYGLHLWDLHGVEGQWQNKGWYMLVLEVLGVGARFFAYITFFCVVLHYYSLPIHMLPELFSSWRAFQNKVVEFVNYRRVIGDLAERFEAVTAADLDG-EDAMCTVCRVDV---DEGHRLPCGHVFHYDCLRSWMERRQQCPTCR 329          
BLAST of mRNA_M-pyrifera_M_contig95761.22081.1 vs. uniprot
Match: UPI001CF180ED (E3 ubiquitin-protein ligase synoviolin-like isoform X1 n=5 Tax=Acropora TaxID=6127 RepID=UPI001CF180ED)

HSP 1 Score: 95.9 bits (237), Expect = 1.010e-19
Identity = 52/172 (30.23%), Postives = 93/172 (54.07%), Query Frame = 1
Query:    4 TLLEHGASVELLFAFECGVLALSLLLITLRFVLHQIDQRIEGQWLNKGTYLLFGSLLLNVLRLGLHVAYFAVVFYHYSAPLLMLRDLVNAFNAVMRNVINLRAAQQLRAKLQRRAWTIQQDDLDHIQDHMCSICRVDVTGDGDAVMLPCRHIYHVHCILPWFENSQTCPFCR 519
            T+++ GASV+L+F FE  +L   ++ I +++VLH ID R E  W NK  YLL+  L+   ++  L+  +  ++   ++ PL  +R +        +++ ++  +++  A +         ++L    D++C ICR ++T       LPC HI+H  C+  WF+  QTCP CR
Sbjct:  161 TVMQSGASVQLVFGFEYAILLTIVVTIQMKYVLHIIDLRSENPWDNKAVYLLYTELITGFIKTILYSCFMVIMIKVHTFPLFAIRPMYLTLRGFKKSISDVIMSRRAIANMNTLYPDATPEELQQ-GDNVCIICREEMTTG--CKKLPCNHIFHTSCLRSWFQRQQTCPTCR 329          
BLAST of mRNA_M-pyrifera_M_contig95761.22081.1 vs. uniprot
Match: D8LTS9_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTS9_ECTSI)

HSP 1 Score: 85.9 bits (211), Expect = 2.930e-16
Identity = 51/162 (31.48%), Postives = 82/162 (50.62%), Query Frame = 1
Query:   37 LFAFECGVLALSLLLITLRFVLHQIDQRIEGQWLNKGTYLLFGSLLLNVLRLGLHVAYFAVVFYHYSAPLL-MLRDLVNAFNAVMRNVINLRAAQQLRAKLQRRAWTIQQDDLDHIQDHMCSICRVDVTGDGDAVMLPCRHIYHVHCILPWFENSQTCPFCR 519
            LFAFE  +L+++     +  +LH +D R+EG W  K T+++       V +   +V +F V+F  Y  P L ++RD+  +F+ + R +      +QL   +  R     +++L   + H C ICR D    G    LPC HI+H  C+  W +  Q CP CR
Sbjct:  172 LFAFEYAILSIAAFSTAVHLLLHVVDNRMEGAWHAKATWVMLLEFFSEVFKFSFYVIFFGVMFSLYGVPPLNLIRDVYMSFDRLQRRLQAFYRYRQLANTMDERFPDATEEELAECE-HTCIICR-DTMDAGKK--LPCGHIFHFQCLRMWLQQQQACPTCR 329          
BLAST of mRNA_M-pyrifera_M_contig95761.22081.1 vs. uniprot
Match: A0A0W4ZVS2_PNEJ7 (RING-type domain-containing protein n=1 Tax=Pneumocystis jirovecii (strain RU7) TaxID=1408657 RepID=A0A0W4ZVS2_PNEJ7)

HSP 1 Score: 81.6 bits (200), Expect = 8.660e-15
Identity = 47/190 (24.74%), Postives = 87/190 (45.79%), Query Frame = 1
Query:    4 TLLEHGASVELLFAFECGVLALSLLLITLRFVLHQIDQRIEGQWLNKGTYLLFGSLLLNVLRLGLHVAYFAVVFYHYSAPLLMLRDLVNAFNAVMRNVINLRAAQQLRAKLQRRAWTIQQDDLDHIQDHMCSICRVDVTGDGDA---------------VMLPCRHIYHVHCILPWFENSQTCPFCREAV 528
            T+L    ++ L+FAFE  +L  +++   +++  + ID      W NKG Y+L+  L L + +L  +  +F +    Y  PL ++RD+     + +    +L   +++   + +R      +++   +D  C ICR ++    +                  LPC HI H +C+  W E  Q+CP CR  V
Sbjct:  119 TILNQKPNMMLMFAFEFAILTSTIIGAAIKYTFNLIDSYHNDNWENKGLYVLYLELFLELFKLIAYTTFFMLALTFYGLPLHIIRDVYITLKSFLAKCRDLIRYKRVTNNMNQRFVDATLEEITATEDKTCIICREEMVHSSEKDPNENNKSQHINNTPKKLPCNHILHFNCLKSWLERQQSCPTCRRPV 308          
BLAST of mRNA_M-pyrifera_M_contig95761.22081.1 vs. uniprot
Match: A0A1E7FD03_9STRA (RING-type domain-containing protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FD03_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 1.430e-13
Identity = 46/173 (26.59%), Postives = 89/173 (51.45%), Query Frame = 1
Query:    1 MTLLEHGASVELLFAFECGVLALSLLLITLRFVLHQIDQRIEGQWLNKGTYLLFGSLLLNVLRLGLHVAYFAVVFYHYSAPLLMLRDLVNAFNAVMRNVINLRAAQQLRAKLQRRAWTIQQDDLDHIQDHMCSICRVDVTGDGDAVMLPCRHIYHVHCILPWFENSQTCPFCR 519
            M ++ +G SV + FAFE  ++  S++   L + LH +D        +K T +    L     +   ++ +FA+V  +Y  P+ ++R++  +F+++   +I     ++L + + R       +DL+  ++H+C ICR ++T +    +  C HI+H  C+  W    QTCP CR
Sbjct:  172 MNIMTNGPSVSIFFAFESLIMLTSVISNNLLWYLHMMDD-------HKATLIFAVELQAQAAKFMFYLTFFAIVMTYYGLPINLIREVYVSFHSLKTRLIAFNKYRKLMSSMNRFKDPTT-EDLE--EEHICIICRDEMTVETSKKLPGCGHIFHKSCLRDWLVQQQTCPTCR 334          
BLAST of mRNA_M-pyrifera_M_contig95761.22081.1 vs. uniprot
Match: A0A098VXU6_9MICR (Synovial apoptosis inhibitor 1 n=1 Tax=Mitosporidium daphniae TaxID=1485682 RepID=A0A098VXU6_9MICR)

HSP 1 Score: 75.1 bits (183), Expect = 1.230e-12
Identity = 51/183 (27.87%), Postives = 87/183 (47.54%), Query Frame = 1
Query:   16 HGASVELLFAFECGVLALSLLLITLRFVLHQIDQRIEGQ-WLNK-----------GTYLLFGSLLLNVLRLGLHVAYFAVVFYHYSAPLLMLRDLVNAFNAVMRNVINLRAAQQLRAKLQRRAWTIQQDDLDHIQDHMCSICRVDVTGDGDAVMLPCRHIYHVHCILPWFENSQTCPFCREAV 528
            +G S+ L+FAFE G+L +SL+    ++  +  D  +  + W +K           GT+ +  S++ +  RL L+  +F  V   Y  P+ ++RD      ++   + +LR   Q    ++ R     + DL    D +C ICR D+     A  L C H++H  C+  W E  Q+CP CR  +
Sbjct:  120 YGPSMMLIFAFEAGILTVSLISSAAKYGFNIYDSSLAPEEWESKSIAMVYLDIISGTFTMLSSII-DFFRLLLYGTFFGAVTGLYGLPIHIIRDFYLTVKSLATRIQDLRRFLQATQNMEERYMDATEQDLG-ASDRLCIICREDMQS---AKKLDCGHMFHFKCLKSWLERQQSCPTCRSPI 297          
BLAST of mRNA_M-pyrifera_M_contig95761.22081.1 vs. uniprot
Match: UPI00200812B2 (RING-type E3 ubiquitin transferase n=1 Tax=Purpureocillium takamizusanense TaxID=2060973 RepID=UPI00200812B2)

HSP 1 Score: 72.8 bits (177), Expect = 1.110e-11
Identity = 52/164 (31.71%), Postives = 83/164 (50.61%), Query Frame = 1
Query:  106 QIDQRIEGQWLNKGTYLLFGSLLLNVLRLGLHVAYFAVVFYHYSAPLLMLRDL-------VNAFNAVMRNVINLRAAQQLRAKLQRRAWTIQQDDLDHIQDHMCSICRVDVT--------GDGDAVM---LPCRHIYHVHCILPWFENSQTCPFCREAVAPDLP 543
            ++D  + G W  KG ++L+  LL ++++LG++VA+FA++   Y  P+ ++RDL       V   NA++R     RA Q++      R      +DL   Q++ C ICR ++         G  D +    LPC HI H+ C+  W E  Q CP CR  V  + P
Sbjct:  257 EMDIEVPG-WAAKGEWVLWLDLLTDMIKLGIYVAFFAMLLTFYGLPIHIMRDLFMTSRDFVKRLNALLRYR---RAIQEMN-----RYHDATAEDL--AQENTCIICREEMRPWDPANNPGAIDRIRPKKLPCGHILHLGCLKSWLERQQVCPTCRSPVTAERP 409          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig95761.22081.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2P6TP50_CHLSO1.170e-2635.03ERAD-associated E3 ubiquitin-ligase HRD1B-like n=1... [more]
A0A4D9CLU7_9STRA8.460e-2534.86RING-type domain-containing protein n=2 Tax=Monodo... [more]
UPI001ED8BCD72.500e-2134.10E3 ubiquitin-protein ligase synoviolin B n=1 Tax=I... [more]
A0A0L0DFU9_THETB6.430e-2135.09E3 ubiquitin-protein ligase synoviolin-A n=1 Tax=T... [more]
UPI001CF180ED1.010e-1930.23E3 ubiquitin-protein ligase synoviolin-like isofor... [more]
D8LTS9_ECTSI2.930e-1631.48RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A0W4ZVS2_PNEJ78.660e-1524.74RING-type domain-containing protein n=1 Tax=Pneumo... [more]
A0A1E7FD03_9STRA1.430e-1326.59RING-type domain-containing protein (Fragment) n=1... [more]
A0A098VXU6_9MICR1.230e-1227.87Synovial apoptosis inhibitor 1 n=1 Tax=Mitosporidi... [more]
UPI00200812B21.110e-1131.71RING-type E3 ubiquitin transferase n=1 Tax=Purpure... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig95761contigM-pyrifera_M_contig95761:3..548 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score122.9
Seed ortholog evalue1.6e-25
Seed eggNOG ortholog112098.XP_008605645.1
Preferred nameSYVN1
KEGG koko:K10601
KEGG Pathwayko04120,ko04141,map04120,map04141
KEGG ModuleM00403
Hectar predicted targeting categorysignal peptide
GOsGO:0000151,GO:0000153,GO:0000209,GO:0000835,GO:0000836,GO:0000839,GO:0001701,GO:0002020,GO:0002039,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005783,GO:0005789,GO:0005790,GO:0005886,GO:0006417,GO:0006464,GO:0006486,GO:0006487,GO:0006508,GO:0006511,GO:0006517,GO:0006807,GO:0006810,GO:0006886,GO:0006950,GO:0006986,GO:0007154,GO:0007165,GO:0007275,GO:0008104,GO:0008150,GO:0008152,GO:0008270,GO:0008593,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009790,GO:0009792,GO:0009889,GO:0009966,GO:0009968,GO:0009987,GO:0010033,GO:0010243,GO:0010468,GO:0010498,GO:0010556,GO:0010608,GO:0010646,GO:0010648,GO:0010941,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016567,GO:0016740,GO:0018193,GO:0018196,GO:0018279,GO:0019222,GO:0019538,GO:0019787,GO:0019899,GO:0019941,GO:0023051,GO:0023052,GO:0023057,GO:0030163,GO:0030176,GO:0030433,GO:0030968,GO:0030970,GO:0031224,GO:0031227,GO:0031323,GO:0031326,GO:0031647,GO:0031974,GO:0031981,GO:0031984,GO:0032268,GO:0032446,GO:0032501,GO:0032502,GO:0032527,GO:0032991,GO:0033036,GO:0033554,GO:0034248,GO:0034613,GO:0034620,GO:0034645,GO:0034976,GO:0035264,GO:0035966,GO:0035967,GO:0036211,GO:0036335,GO:0036490,GO:0036498,GO:0036503,GO:0036507,GO:0036508,GO:0036513,GO:0040007,GO:0042175,GO:0042221,GO:0042592,GO:0042886,GO:0042981,GO:0043009,GO:0043066,GO:0043067,GO:0043069,GO:0043161,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043413,GO:0043555,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044322,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046872,GO:0046907,GO:0046914,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048589,GO:0048856,GO:0048872,GO:0050789,GO:0050794,GO:0050821,GO:0050896,GO:0051082,GO:0051087,GO:0051117,GO:0051171,GO:0051179,GO:0051234,GO:0051246,GO:0051603,GO:0051641,GO:0051649,GO:0051716,GO:0060255,GO:0060548,GO:0061630,GO:0061659,GO:0065007,GO:0065008,GO:0070013,GO:0070085,GO:0070647,GO:0070727,GO:0070887,GO:0070936,GO:0071310,GO:0071702,GO:0071704,GO:0071705,GO:0071944,GO:0080090,GO:0080134,GO:0080135,GO:0098796,GO:0098827,GO:0140096,GO:1901135,GO:1901137,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901698,GO:1902235,GO:1902236,GO:1902494,GO:1902531,GO:1902532,GO:1903513,GO:1903573,GO:1904380,GO:1905897,GO:1990234,GO:1990381,GO:2000112,GO:2001233,GO:2001234,GO:2001242,GO:2001243
EggNOG free text desc.protein polyubiquitination
EggNOG OGsCOG5243@1,KOG0802@2759
EC2.3.2.27
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04121
Exons1
Model size546
Cds size546
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816872.480882-CDS-M-pyrifera_M_contig95761:2..5481622816872.480882-CDS-M-pyrifera_M_contig95761:2..548Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig95761 3..548 +
1692278228.3561542-CDS-M-pyrifera_M_contig95761:2..5481692278228.3561542-CDS-M-pyrifera_M_contig95761:2..548Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig95761 3..548 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig95761.22081.1prot_M-pyrifera_M_contig95761.22081.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig95761 3..548 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig95761.22081.1

>prot_M-pyrifera_M_contig95761.22081.1 ID=prot_M-pyrifera_M_contig95761.22081.1|Name=mRNA_M-pyrifera_M_contig95761.22081.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=182bp
MTLLEHGASVELLFAFECGVLALSLLLITLRFVLHQIDQRIEGQWLNKGT
YLLFGSLLLNVLRLGLHVAYFAVVFYHYSAPLLMLRDLVNAFNAVMRNVI
NLRAAQQLRAKLQRRAWTIQQDDLDHIQDHMCSICRVDVTGDGDAVMLPC
RHIYHVHCILPWFENSQTCPFCREAVAPDLPP
back to top

mRNA from alignment at M-pyrifera_M_contig95761:3..548+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig95761.22081.1 ID=mRNA_M-pyrifera_M_contig95761.22081.1|Name=mRNA_M-pyrifera_M_contig95761.22081.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=546bp|location=Sequence derived from alignment at M-pyrifera_M_contig95761:3..548+ (Macrocystis pyrifera P11B4 male)
ATGACGCTGCTGGAGCATGGAGCTTCTGTGGAGCTCTTGTTTGCCTTCGA ATGCGGCGTATTGGCCTTGTCGCTGCTGCTGATCACGCTGCGCTTTGTGC TGCACCAGATCGACCAGCGGATCGAAGGTCAGTGGCTGAACAAAGGCACG TATTTGCTGTTCGGCTCGCTGCTCCTAAACGTGCTCCGCCTAGGTCTCCA CGTCGCTTACTTTGCAGTGGTATTCTACCACTACTCTGCGCCTCTGCTGA TGCTGCGTGACCTCGTGAACGCCTTCAACGCCGTGATGCGCAATGTGATC AATCTGAGGGCGGCACAGCAGCTGCGAGCCAAATTGCAGCGAAGAGCTTG GACCATCCAGCAAGACGACCTGGATCACATCCAAGACCACATGTGCTCCA TCTGCAGAGTGGACGTCACTGGGGACGGAGACGCTGTCATGCTGCCTTGC AGACACATCTACCACGTGCACTGCATCCTCCCGTGGTTTGAAAACTCGCA AACCTGCCCATTCTGCAGAGAGGCAGTGGCACCCGACCTCCCACCC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig95761:3..548+

>mRNA_M-pyrifera_M_contig95761.22081.1 ID=mRNA_M-pyrifera_M_contig95761.22081.1|Name=mRNA_M-pyrifera_M_contig95761.22081.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1092bp|location=Sequence derived from alignment at M-pyrifera_M_contig95761:3..548+ (Macrocystis pyrifera P11B4 male)
ATGACGCTGCTGGAGCATGGAGCTTCTGTGGAGCTCTTGTTTGCCTTCGA
ATGCGGCGTATTGGCCTTGTCGCTGCTGCTGATCACGCTGCGCTTTGTGC
TGCACCAGATCGACCAGCGGATCGAAGGTCAGTGGCTGAACAAAGGCACG
TATTTGCTGTTCGGCTCGCTGCTCCTAAACGTGCTCCGCCTAGGTCTCCA
CGTCGCTTACTTTGCAGTGGTATTCTACCACTACTCTGCGCCTCTGCTGA
TGCTGCGTGACCTCGTGAACGCCTTCAACGCCGTGATGCGCAATGTGATC
AATCTGAGGGCGGCACAGCAGCTGCGAGCCAAATTGCAGCGAAGAGCTTG
GACCATCCAGCAAGACGACCTGGATCACATCCAAGACCACATGTGCTCCA
TCTGCAGAGTGGACGTCACTGGGGACGGAGACGCTGTCATGCTGCCTTGC
AGACACATCTACCACGTGCACTGCATCCTCCCGTGGTTTGAAAACTCGCA
AACCTGCCCATTCTGCAGAGAGGCAGTGGCACCCGACCTCCCACCCATGA
CGCTGCTGGAGCATGGAGCTTCTGTGGAGCTCTTGTTTGCCTTCGAATGC
GGCGTATTGGCCTTGTCGCTGCTGCTGATCACGCTGCGCTTTGTGCTGCA
CCAGATCGACCAGCGGATCGAAGGTCAGTGGCTGAACAAAGGCACGTATT
TGCTGTTCGGCTCGCTGCTCCTAAACGTGCTCCGCCTAGGTCTCCACGTC
GCTTACTTTGCAGTGGTATTCTACCACTACTCTGCGCCTCTGCTGATGCT
GCGTGACCTCGTGAACGCCTTCAACGCCGTGATGCGCAATGTGATCAATC
TGAGGGCGGCACAGCAGCTGCGAGCCAAATTGCAGCGAAGAGCTTGGACC
ATCCAGCAAGACGACCTGGATCACATCCAAGACCACATGTGCTCCATCTG
CAGAGTGGACGTCACTGGGGACGGAGACGCTGTCATGCTGCCTTGCAGAC
ACATCTACCACGTGCACTGCATCCTCCCGTGGTTTGAAAACTCGCAAACC
TGCCCATTCTGCAGAGAGGCAGTGGCACCCGACCTCCCACCC
back to top