mRNA_M-pyrifera_M_contig95705.22068.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig95705.22068.1
Unique NamemRNA_M-pyrifera_M_contig95705.22068.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig95705.22068.1 vs. uniprot
Match: A0A7S2B1L5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B1L5_9STRA)

HSP 1 Score: 129 bits (325), Expect = 5.240e-36
Identity = 62/97 (63.92%), Postives = 76/97 (78.35%), Query Frame = 1 
Query:    7 ALGMAEGAPPPWLINMQRYGPPPAYPSLRIPGLNAPIPAGAAFGFQPGQWGQPPVDQLGRPVYGDVFGKEGESEEAKASAEAGVLKEHWGELAAEEE 297
            ALGM + APPPWLINMQRYGPPP+YPSL+I GLNAP+P GA+FG+ PG WG+PPVD+ GRP+YGDVFG+   +E + A+A   V    WGEL +E E
Sbjct:   12 ALGMPDNAPPPWLINMQRYGPPPSYPSLKIAGLNAPLPEGASFGYHPGGWGKPPVDEYGRPIYGDVFGQ---AEASAATAAPEVDHTLWGELGSESE 105
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BLAST of mRNA_M-pyrifera_M_contig95705.22068.1 vs. uniprot
Match: A0A804PWD8_MAIZE (PSP domain-containing protein n=2 Tax=Zea mays TaxID=4577 RepID=A0A804PWD8_MAIZE)

HSP 1 Score: 136 bits (342), Expect = 6.230e-36
Identity = 64/99 (64.65%), Postives = 79/99 (79.80%), Query Frame = 1 
Query:    1 QDALGMAEGAPPPWLINMQRYGPPPAYPSLRIPGLNAPIPAGAAFGFQPGQWGQPPVDQLGRPVYGDVFGKEGESEEAKASAEAGVLKEHWGELAAEEE 297
            +DALGM +GAPPPWLINMQRYGPPP+YP L+IPGLNAPIP GA+FG++PG+WG+PPVD+ GRP+YGDVFG   + +E     E     +HWG+L  EEE
Sbjct:   80 KDALGMPDGAPPPWLINMQRYGPPPSYPQLKIPGLNAPIPPGASFGYRPGEWGKPPVDEHGRPLYGDVFGVL-QQDEPSYDDEPVDRSKHWGDLEEEEE 177
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BLAST of mRNA_M-pyrifera_M_contig95705.22068.1 vs. uniprot
Match: A0A4V3WRC6_CAMSI (PSP domain-containing protein n=1 Tax=Camellia sinensis var. sinensis TaxID=542762 RepID=A0A4V3WRC6_CAMSI)

HSP 1 Score: 135 bits (339), Expect = 8.370e-36
Identity = 63/98 (64.29%), Postives = 77/98 (78.57%), Query Frame = 1 
Query:    1 QDALGMAEGAPPPWLINMQRYGPPPAYPSLRIPGLNAPIPAGAAFGFQPGQWGQPPVDQLGRPVYGDVFGKEGESEEAKASAEAGVLKEHWGELAAEE 294
            ++ALGM EGAPPPWLINMQRYGPPP+YP L+IPGLNAPIP GA+FG+ PG WG+PPVD+ GRP+YGDVFG + + E+     E     +HWG+L  EE
Sbjct:   41 KEALGMPEGAPPPWLINMQRYGPPPSYPHLKIPGLNAPIPLGASFGYHPGGWGKPPVDEFGRPLYGDVFGVQ-QQEQPNYEEEPVDKTKHWGDLEEEE 137
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BLAST of mRNA_M-pyrifera_M_contig95705.22068.1 vs. uniprot
Match: A0A5J9UVJ9_9POAL (PSP domain-containing protein n=2 Tax=PACMAD clade TaxID=147370 RepID=A0A5J9UVJ9_9POAL)

HSP 1 Score: 139 bits (349), Expect = 1.520e-35
Identity = 64/99 (64.65%), Postives = 81/99 (81.82%), Query Frame = 1 
Query:    1 QDALGMAEGAPPPWLINMQRYGPPPAYPSLRIPGLNAPIPAGAAFGFQPGQWGQPPVDQLGRPVYGDVFGKEGESEEAKASAEAGVLKEHWGELAAEEE 297
            ++ALGM +GAPPPWLINMQRYGPPP+YPSL+IPGLNAPIP GA+FG++PG+WG+PPVD+ GRP+YGDVFG + + +E     E     +HWG+L  EEE
Sbjct:  293 KEALGMPDGAPPPWLINMQRYGPPPSYPSLKIPGLNAPIPPGASFGYRPGEWGKPPVDEYGRPLYGDVFGVQ-QQDEPNYDDEPVDRSKHWGDLEEEEE 390
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BLAST of mRNA_M-pyrifera_M_contig95705.22068.1 vs. uniprot
Match: A0A804PTR1_MAIZE (PSP domain-containing protein n=4 Tax=Zea mays TaxID=4577 RepID=A0A804PTR1_MAIZE)

HSP 1 Score: 136 bits (342), Expect = 1.740e-35
Identity = 64/99 (64.65%), Postives = 79/99 (79.80%), Query Frame = 1 
Query:    1 QDALGMAEGAPPPWLINMQRYGPPPAYPSLRIPGLNAPIPAGAAFGFQPGQWGQPPVDQLGRPVYGDVFGKEGESEEAKASAEAGVLKEHWGELAAEEE 297
            +DALGM +GAPPPWLINMQRYGPPP+YP L+IPGLNAPIP GA+FG++PG+WG+PPVD+ GRP+YGDVFG   + +E     E     +HWG+L  EEE
Sbjct:  134 KDALGMPDGAPPPWLINMQRYGPPPSYPQLKIPGLNAPIPPGASFGYRPGEWGKPPVDEHGRPLYGDVFGVL-QQDEPSYDDEPVDRSKHWGDLEEEEE 231
[Close]
BLAST of mRNA_M-pyrifera_M_contig95705.22068.1 vs. uniprot
Match: A0A0A0LMT1_CUCSA (PSP domain-containing protein n=12 Tax=Cucurbitaceae TaxID=3650 RepID=A0A0A0LMT1_CUCSA)

HSP 1 Score: 138 bits (348), Expect = 2.430e-35
Identity = 65/99 (65.66%), Postives = 79/99 (79.80%), Query Frame = 1 
Query:    1 QDALGMAEGAPPPWLINMQRYGPPPAYPSLRIPGLNAPIPAGAAFGFQPGQWGQPPVDQLGRPVYGDVFGKEGESEEAKASAEAGVLKEHWGELAAEEE 297
            ++ALGM EGAPPPWLINMQRYGPPP+YP L+IPGLNAPIP GA+FG+ PG WG+PPVD+ GRP+YGDVFG + + E+A    E     +HWG+L  EEE
Sbjct:  316 KEALGMPEGAPPPWLINMQRYGPPPSYPDLKIPGLNAPIPPGASFGYHPGGWGKPPVDEYGRPLYGDVFGVQ-QQEQANYEEEPVDKTKHWGDLEEEEE 413
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BLAST of mRNA_M-pyrifera_M_contig95705.22068.1 vs. uniprot
Match: A0A662X840_9STRA (PSP domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X840_9STRA)

HSP 1 Score: 138 bits (348), Expect = 2.760e-35
Identity = 64/97 (65.98%), Postives = 79/97 (81.44%), Query Frame = 1 
Query:    1 QDALGMAEGAPPPWLINMQRYGPPPAYPSLRIPGLNAPIPAGAAFGFQPGQWGQPPVDQLGRPVYGDVFGKEGESEEAKASAEAGVLKEHWGELAAE 291
            ++ALGM EG PPPWL+NMQRYGPPPAYP+L+IPGLNAPIP GA+FG+ PG WG+PPVD+ G+P+YGDVFGK  ESE+     + G+ +E WGEL  E
Sbjct:  347 KNALGMVEGVPPPWLLNMQRYGPPPAYPNLKIPGLNAPIPEGASFGYHPGGWGKPPVDENGQPLYGDVFGKPTESEQTVR--DEGINRERWGELEEE 441
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BLAST of mRNA_M-pyrifera_M_contig95705.22068.1 vs. uniprot
Match: A0A059CEB3_EUCGR (PSP domain-containing protein n=1 Tax=Eucalyptus grandis TaxID=71139 RepID=A0A059CEB3_EUCGR)

HSP 1 Score: 135 bits (339), Expect = 3.060e-35
Identity = 63/98 (64.29%), Postives = 77/98 (78.57%), Query Frame = 1 
Query:    1 QDALGMAEGAPPPWLINMQRYGPPPAYPSLRIPGLNAPIPAGAAFGFQPGQWGQPPVDQLGRPVYGDVFGKEGESEEAKASAEAGVLKEHWGELAAEE 294
            ++ALGM EGAPPPWLINMQRYGPPP+YP L+IPGLNAPIP GA+FG+ PG WG+PPVD+ GRP+YGDVFG + + E+     E     +HWG+L  EE
Sbjct:  107 KEALGMPEGAPPPWLINMQRYGPPPSYPQLKIPGLNAPIPPGASFGYHPGGWGKPPVDEFGRPLYGDVFGVQ-QQEQPNYEEEPLDKTKHWGDLEEEE 203
[Close]
BLAST of mRNA_M-pyrifera_M_contig95705.22068.1 vs. uniprot
Match: A0A804UAG5_MAIZE (PSP domain-containing protein n=2 Tax=Zea mays TaxID=4577 RepID=A0A804UAG5_MAIZE)

HSP 1 Score: 136 bits (342), Expect = 3.200e-35
Identity = 64/99 (64.65%), Postives = 79/99 (79.80%), Query Frame = 1 
Query:    1 QDALGMAEGAPPPWLINMQRYGPPPAYPSLRIPGLNAPIPAGAAFGFQPGQWGQPPVDQLGRPVYGDVFGKEGESEEAKASAEAGVLKEHWGELAAEEE 297
            +DALGM +GAPPPWLINMQRYGPPP+YP L+IPGLNAPIP GA+FG++PG+WG+PPVD+ GRP+YGDVFG   + +E     E     +HWG+L  EEE
Sbjct:  171 KDALGMPDGAPPPWLINMQRYGPPPSYPQLKIPGLNAPIPPGASFGYRPGEWGKPPVDEHGRPLYGDVFGVL-QQDEPSYDDEPVDRSKHWGDLEEEEE 268
[Close]
BLAST of mRNA_M-pyrifera_M_contig95705.22068.1 vs. uniprot
Match: A0A804UAE8_MAIZE (PSP domain-containing protein n=1 Tax=Zea mays TaxID=4577 RepID=A0A804UAE8_MAIZE)

HSP 1 Score: 136 bits (342), Expect = 4.130e-35
Identity = 64/99 (64.65%), Postives = 79/99 (79.80%), Query Frame = 1 
Query:    1 QDALGMAEGAPPPWLINMQRYGPPPAYPSLRIPGLNAPIPAGAAFGFQPGQWGQPPVDQLGRPVYGDVFGKEGESEEAKASAEAGVLKEHWGELAAEEE 297
            +DALGM +GAPPPWLINMQRYGPPP+YP L+IPGLNAPIP GA+FG++PG+WG+PPVD+ GRP+YGDVFG   + +E     E     +HWG+L  EEE
Sbjct:  147 KDALGMPDGAPPPWLINMQRYGPPPSYPQLKIPGLNAPIPPGASFGYRPGEWGKPPVDEHGRPLYGDVFGVL-QQDEPSYDDEPVDRSKHWGDLEEEEE 244
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig95705.22068.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2B1L5_9STRA5.240e-3663.92Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A804PWD8_MAIZE6.230e-3664.65PSP domain-containing protein n=2 Tax=Zea mays Tax... [more]
A0A4V3WRC6_CAMSI8.370e-3664.29PSP domain-containing protein n=1 Tax=Camellia sin... [more]
A0A5J9UVJ9_9POAL1.520e-3564.65PSP domain-containing protein n=2 Tax=PACMAD clade... [more]
A0A804PTR1_MAIZE1.740e-3564.65PSP domain-containing protein n=4 Tax=Zea mays Tax... [more]
A0A0A0LMT1_CUCSA2.430e-3565.66PSP domain-containing protein n=12 Tax=Cucurbitace... [more]
A0A662X840_9STRA2.760e-3565.98PSP domain-containing protein n=2 Tax=Nothophytoph... [more]
A0A059CEB3_EUCGR3.060e-3564.29PSP domain-containing protein n=1 Tax=Eucalyptus g... [more]
A0A804UAG5_MAIZE3.200e-3564.65PSP domain-containing protein n=2 Tax=Zea mays Tax... [more]
A0A804UAE8_MAIZE4.130e-3564.65PSP domain-containing protein n=1 Tax=Zea mays Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig95705contigM-pyrifera_M_contig95705:35..657 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score134.8
Seed ortholog evalue3.4e-29
Seed eggNOG ortholog3656.XP_008441819.1
KEGG koko:K12829
KEGG Pathwayko03040,map03040
KEGG ModuleM00352
Hectar predicted targeting categoryother localisation
EggNOG free text desc.mRNA splicing, via spliceosome
EggNOG OGs37RXM@33090,3GENG@35493,4JMBU@91835,COG5182@1,KOG2330@2759
COG Functional cat.AV
Best tax levelfabids
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03041
Exons2
Model size480
Cds size465
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig95705.22068.1prot_M-pyrifera_M_contig95705.22068.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig95705 35..642 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816871.8641725-CDS-M-pyrifera_M_contig95705:34..2121622816871.8641725-CDS-M-pyrifera_M_contig95705:34..212Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig95705 35..212 -
1692278227.9519937-CDS-M-pyrifera_M_contig95705:34..2121692278227.9519937-CDS-M-pyrifera_M_contig95705:34..212Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig95705 35..212 -
1622816871.8751178-CDS-M-pyrifera_M_contig95705:355..6421622816871.8751178-CDS-M-pyrifera_M_contig95705:355..642Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig95705 356..642 -
1692278227.9696562-CDS-M-pyrifera_M_contig95705:355..6421692278227.9696562-CDS-M-pyrifera_M_contig95705:355..642Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig95705 356..642 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816871.8853087-UTR-M-pyrifera_M_contig95705:642..6571622816871.8853087-UTR-M-pyrifera_M_contig95705:642..657Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig95705 643..657 -
1692278227.9846027-UTR-M-pyrifera_M_contig95705:642..6571692278227.9846027-UTR-M-pyrifera_M_contig95705:642..657Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig95705 643..657 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig95705.22068.1

>prot_M-pyrifera_M_contig95705.22068.1 ID=prot_M-pyrifera_M_contig95705.22068.1|Name=mRNA_M-pyrifera_M_contig95705.22068.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=155bp
MAEGAPPPWLINMQRYGPPPAYPSLRIPGLNAPIPAGAAFGFQPGQWGQP
PVDQLGRPVYGDVFGKEGESEEAKASAEAGVLKEHWGELAAEEEGDDEEE
DEEDGEEAEEEAEEGGHVAGLAAAGAGAATPYSLSGATSVATGVATPDAI
NMRKQ
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mRNA from alignment at M-pyrifera_M_contig95705:35..657-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig95705.22068.1 ID=mRNA_M-pyrifera_M_contig95705.22068.1|Name=mRNA_M-pyrifera_M_contig95705.22068.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=623bp|location=Sequence derived from alignment at M-pyrifera_M_contig95705:35..657- (Macrocystis pyrifera P11B4 male)
CAGGATGCACTGGGCATGGCCGAGGGCGCACCGCCCCCGTGGCTGATCAA
CATGCAGCGCTACGGCCCTCCTCCGGCGTACCCCAGCCTGCGCATCCCGG
GCCTCAATGCGCCCATCCCAGCAGGCGCCGCGTTTGGTTTCCAGCCGGGT
CAGTGGGGCCAGCCGCCGGTGGACCAGCTGGGGAGGCCGGTGTACGGAGA
TGTGTTTGGGAAAGAGGGGGAAAGCGAAGAGGCGAAAGCAAGCGCCGAAG
CAGGCGTGTTGAAGGAGCACTGGGGGGAGCTGGCGGCGGAGGAGGAAGGT
GAGTGCCGCCCCCGCGTCTTTCACACCGCGTGGTGCAGCCGTGCCTGTCG
CAGCAGCGCGTGCGCAAGCCCGCCCCTGGCACGCTGCCTCATCACACGCC
GGCTGCCGCAGAGAGCGAGTCGGAGGATGAGGATGATGATGAGAGCGATG
AGGAGGAGGATGAGGAGGACGGGGAGGAGGCGGAAGAGGAGGCGGAAGAA
GGTGGGCACGTGGCTGGCTTGGCTGCAGCCGGCGCCGGTGCAGCTACGCC
GTACTCGCTGTCAGGCGCGACTAGTGTGGCTACTGGAGTCGCCACCCCAG
ACGCGATCAACATGCGCAAACAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig95705:35..657-

>mRNA_M-pyrifera_M_contig95705.22068.1 ID=mRNA_M-pyrifera_M_contig95705.22068.1|Name=mRNA_M-pyrifera_M_contig95705.22068.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=930bp|location=Sequence derived from alignment at M-pyrifera_M_contig95705:35..657- (Macrocystis pyrifera P11B4 male)
ATGGCCGAGGGCGCACCGCCCCCGTGGCTGATCAACATGCAGCGCTACGG
CCCTCCTCCGGCGTACCCCAGCCTGCGCATCCCGGGCCTCAATGCGCCCA
TCCCAGCAGGCGCCGCGTTTGGTTTCCAGCCGGGTCAGTGGGGCCAGCCG
CCGGTGGACCAGCTGGGGAGGCCGGTGTACGGAGATGTGTTTGGGAAAGA
GGGGGAAAGCGAAGAGGCGAAAGCAAGCGCCGAAGCAGGCGTGTTGAAGG
AGCACTGGGGGGAGCTGGCGGCGGAGGAGGAAGGTGAATGGCCGAGGGCG
CACCGCCCCCGTGGCTGATCAACATGCAGCGCTACGGCCCTCCTCCGGCG
TACCCCAGCCTGCGCATCCCGGGCCTCAATGCGCCCATCCCAGCAGGCGC
CGCGTTTGGTTTCCAGCCGGGTCAGTGGGGCCAGCCGCCGGTGGACCAGC
TGGGGAGGCCGGTGTACGGAGATGTGTTTGGGAAAGAGGGGGAAAGCGAA
GAGGCGAAAGCAAGCGCCGAAGCAGGCGTGTTGAAGGAGCACTGGGGGGA
GCTGGCGGCGGAGGAGGAAGGTGACGATGAGGAGGAGGATGAGGAGGACG
GGGAGGAGGCGGAAGAGGAGGCGGAAGAAGGTGGGCACGTGGCTGGCTTG
GCTGCAGCCGGCGCCGGTGCAGCTACGCCGTACTCGCTGTCAGGCGCGAC
TAGTGTGGCTACTGGAGTCGCCACCCCAGACGCGATCAACATGCGCAAAC
AGCGATGAGGAGGAGGATGAGGAGGACGGGGAGGAGGCGGAAGAGGAGGC
GGAAGAAGGTGGGCACGTGGCTGGCTTGGCTGCAGCCGGCGCCGGTGCAG
CTACGCCGTACTCGCTGTCAGGCGCGACTAGTGTGGCTACTGGAGTCGCC
ACCCCAGACGCGATCAACATGCGCAAACAG
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