mRNA_M-pyrifera_M_contig95642.22055.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig95642.22055.1
Unique NamemRNA_M-pyrifera_M_contig95642.22055.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig95642.22055.1 vs. uniprot
Match: F0YP59_AURAN (Helicase C-terminal domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YP59_AURAN)

HSP 1 Score: 152 bits (383), Expect = 1.470e-42
Identity = 108/211 (51.18%), Postives = 127/211 (60.19%), Query Frame = 1
Query:    1 RNSQAARARASKQFRDADGGAFLFSSDVSARGMDYPGVTAVVQFGLTS-REQYIHRLGRTARAGKAGGGLLLVAPEEA-----RALLGPTWPPKRPTEVGEVKAGDLKGLPLVPSTADSTLTGGAAAGIRVTHGVAFVAWLGFYNSNLRRLKWDKATLVANANALWADGSDPVPLFGGLAQPPTLPRKTVGKMGLRGTPGLIEEAKGARGG 615
            R SQ+ R + +  FRDA GG  LF+SDVSARGMDYP VT VVQFG  +   QY+HRLGRTARAGK G G LL++  EA     +A+       +RP     + AGD  G  L     D+ L G A A    T G A+ AWLGFYNS+LRRL+WDK  LVA AN  WA          G+A+PP L  KTVGKMGL+G  GL   AKG  GG
Sbjct:    6 RKSQSHRTKVADAFRDATGGCCLFTSDVSARGMDYPDVTRVVQFGAPADAAQYVHRLGRTARAGKEGSGCLLLSDFEAYFLEDKAIKALPIAMQRP-----LVAGDATGAVL--GRVDAALMGAARALPPETCGAAYQAWLGFYNSSLRRLRWDKDDLVAEAND-WAKE------ILGMAEPPQLQAKTVGKMGLKGVRGL-NVAKGPSGG 201          
BLAST of mRNA_M-pyrifera_M_contig95642.22055.1 vs. uniprot
Match: A0A7S2LSU6_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LSU6_9STRA)

HSP 1 Score: 141 bits (355), Expect = 2.050e-38
Identity = 95/207 (45.89%), Postives = 125/207 (60.39%), Query Frame = 1
Query:    1 RNSQAARARASKQFRDADGGAFLFSSDVSARGMDYPGVTAVVQFGLTSREQYIHRLGRTARAGKAG-GGLLLVAPEEARALLGPTWPPKRPTEVGEVKAGDLKGLPLVPSTADSTLTGGAAAG-----------IRVTHGVAFVAWLGFYNSNLRRLKWDKATLVANANALWADGSDPVPLFGGLAQPPTLPRKTVGKMGLRGTPGL 585
            R +Q AR RAS++FR +   A +F+SDV+ARGMDYP VT V+Q GLT R QYIHRLGRTARAGK G GGLLL   EEA  +       K+          +LKG+PL P+  + ++   A              +RV+   A+ AWLG+YN +L++++WDK  LV  AN LWA  +       GL+  P L ++TVGKMGL+G PGL
Sbjct:   40 RKAQKARERASEEFRKSKN-AVMFTSDVTARGMDYPDVTFVLQVGLTDRAQYIHRLGRTARAGKEGKGGLLLSNYEEAHMV-------KK----------ELKGMPLEPTPINVSVKTSAVVEQAKQNVGKDKTLRVSAEQAYRAWLGYYNGHLKKVRWDKKLLVQQAN-LWAQQN-------GLSDQPALQKRTVGKMGLKGVPGL 220          
BLAST of mRNA_M-pyrifera_M_contig95642.22055.1 vs. uniprot
Match: A0A7S1C442_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C442_9STRA)

HSP 1 Score: 142 bits (357), Expect = 4.540e-36
Identity = 96/209 (45.93%), Postives = 119/209 (56.94%), Query Frame = 1
Query:    1 RNSQAARARASKQFRDADGGAFLFSSDVSARGMDYPGVTAVVQFGLTSREQYIHRLGRTARAGKAGGGLLLVAPEEARAL-------LGPTWPPKRPTEVGEVKAGD------LKGLPLVPSTADSTLTGGAA-AGIRVTHGVAFVAWLGFYNSNLRRLKWDKATLVANANALWADGSDPVPLFGGLAQPPTLPRKTVGKMGLRGTPGL 585
            R SQAAR +AS+QF D  G   +F+SDVSARGMDYPG+T V+Q GLT +EQY+HRLGRTARAGK G GLL++AP E   L       L    P  + T    V  G       L  LP      D+   G A  A +      A+ +WLGFYNS+LR  +W + TLV   NA +A          G + PP L ++TVGKMGL+G  GL
Sbjct:  335 RKSQAARVKASRQFLDGSG-VTMFTSDVSARGMDYPGLTLVLQVGLTEKEQYVHRLGRTARAGKGGCGLLIMAPHERHMLRTLADMPLTEAGPASKITGGVSVVGGPRDNLSTLTDLPAFQRVLDNIERGHAREAPLSARAAQAYGSWLGFYNSHLRACRWTQETLVQETNAFFATL--------GCSTPPALMKRTVGKMGLKGVRGL 534          
BLAST of mRNA_M-pyrifera_M_contig95642.22055.1 vs. uniprot
Match: A0A7S2S2Y5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S2Y5_9STRA)

HSP 1 Score: 135 bits (339), Expect = 7.480e-36
Identity = 97/211 (45.97%), Postives = 120/211 (56.87%), Query Frame = 1
Query:    1 RNSQAARARASKQFRDADGGAFLFSSDVSARGMDYPGVTAVVQFGLTSREQYIHRLGRTARAGKAGGGLLLVAPEEARALLGPTWPPKRPTEVGEVKAGDLKGLPLVP---------STADSTLTGGAAAGIRVTHGV------AFVAWLGFYNSNLRRLKWDKATLVANANALWADGSDPVPLFGGLAQPPTLPRKTVGKMGLRGTPGLI 588
            R SQ  R +AS+ F     G  LF+SDVSARGMDYP VT V+Q GLT++EQYIHRLGRTARAGK+G G LLVA  E R +                   +L+G+PLVP         S++   L    A+     H +      ++ AWLGFYNSNLR+L W+K  LV  AN L+A G        G   PP L ++TVGKMGLR  PGL+
Sbjct:   51 RKSQPQRDKASRAFASCHQGV-LFTSDVSARGMDYPNVTFVLQVGLTTKEQYIHRLGRTARAGKSGTGALLVAEFEERPM-----------------QNELRGVPLVPAPLPAPNPASSSLPQLQALLASMANPRHPLHQSAAQSYQAWLGFYNSNLRKLGWNKPHLVQMAN-LYARGI-------GHPTPPPLLKRTVGKMGLRDVPGLV 235          
BLAST of mRNA_M-pyrifera_M_contig95642.22055.1 vs. uniprot
Match: A0A2P6VP19_9CHLO (DEAD-box ATP-dependent RNA helicase 25-like n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VP19_9CHLO)

HSP 1 Score: 142 bits (357), Expect = 1.180e-35
Identity = 101/208 (48.56%), Postives = 128/208 (61.54%), Query Frame = 1
Query:    1 RNSQAARARASKQFRDADGGAFLFSSDVSARGMDYPGVTAVVQFGL-TSREQYIHRLGRTARAGKAGGGLLLVAPEEARALLGPTWPPKRPTEVGEVKAGDLKGLPLVPSTADSTLTGGAAA----GIRVTHGVAFVAWLGFYNSNLRRLKWDKATLVANANALWADGSDPVPLFGGLAQPPTLPRKTVGKMGLRGTPGL-IEEAKGA 606
            R SQ+AR +ASK+FR+A   + LFSSDVSARG+DYP VT V+Q G+ +SREQYIHRLGRTARAG+AG GL+++ PEE   L              +++   L   P VP +   T    AA     G R+   +A+ AWLGFYNS  + + WDK TLV  AN   A          GL+QPP L +KT+G MGLRG PGL I+E+ GA
Sbjct:  363 RKSQSAREKASKEFREARA-SILFSSDVSARGVDYPDVTMVLQVGIPSSREQYIHRLGRTARAGRAGRGLIMLMPEEQHFLR-------------QLRDLPLTAEPGVPVSQQETAAIQAALPRLMGDRLPD-MAYAAWLGFYNST-KGMGWDKPTLVEQANRFAA--------VMGLSQPPALMKKTIGMMGLRGVPGLRIDESGGA 546          
BLAST of mRNA_M-pyrifera_M_contig95642.22055.1 vs. uniprot
Match: A0A7S4AEW1_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AEW1_9STRA)

HSP 1 Score: 141 bits (355), Expect = 1.480e-35
Identity = 98/209 (46.89%), Postives = 122/209 (58.37%), Query Frame = 1
Query:    1 RNSQAARARASKQFRDADGGAFLFSSDVSARGMDYPGVTAVVQFGLTSREQYIHRLGRTARAGKAGGGLLLVAPEEARALLGPTWPPKRPTEVGEVKAGDLKGLPLVPSTADSTLTGGAAA-----GIRVTHGV------AFVAWLGFYNSNLRRLKWDKATLVANANALWADGSDPVPLFGGLAQPPTLPRKTVGKMGLRGTPGLIEE 594
            R SQ  R RAS +FR     A +FSSDV+ARGMDYPGVT V+Q GLT R QYIHRLGRTARAGK G G LL+A  E   +               VK  +L  +PL  ++  S  T  +AA      +  TH +      A+ AWLG+YN +L+++KWDK TLV  AN   A+         GL   P+L ++T+GKMGLRGTPGLI E
Sbjct:  409 RKSQKQRERASDEFRKRKN-AVMFSSDVTARGMDYPGVTFVLQVGLTDRSQYIHRLGRTARAGKDGKGGLLLAEYERDYM---------------VKK-ELADMPLESTSIPSLDTASSAATRAIQNVSKTHDLRTAAEQAYRAWLGYYNGHLKKVKWDKKTLVQQANMWGAEV--------GLKAQPSLQKRTIGKMGLRGTPGLIIE 592          
BLAST of mRNA_M-pyrifera_M_contig95642.22055.1 vs. uniprot
Match: A0A7S3DXD7_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DXD7_9STRA)

HSP 1 Score: 140 bits (353), Expect = 3.780e-35
Identity = 94/202 (46.53%), Postives = 122/202 (60.40%), Query Frame = 1
Query:    1 RNSQAARARASKQFRDADGGAFLFSSDVSARGMDYPGVTAVVQFGLTSREQYIHRLGRTARAGKAGGGLLLVAPEEARALLGPTWPPKRPTEVGEVKAGDLKGLPLVP---STADSTLTGGAAAG-IRVTHGVAFVAWLGFYNSNLRRLKWDKATLVANANALWADGSDPVPLFGGLAQPPTLPRKTVGKMGLRGTPGLIEE 594
            R SQ+AR +AS QFR +   A LF+SDV+ARGMDY  VTAV+Q G T R+QYIHRLGRTARAGK+G G++L+AP E   ++          E+ ++   +    PL P   +  D  L   +    +R +   A+ AWLG+YN NLR+  WDK TLV  AN  WA          GL + P L +KTVGKMGL+G PGL+ E
Sbjct:  450 RKSQSARQKASDQFRKSRN-AILFTSDVTARGMDYDNVTAVLQVGFTERDQYIHRLGRTARAGKSGHGVVLMAPYEKNHMM--------KKELQDLPMQESACPPLSPELQAAMDGALRNVSQNNSLRESAEQAYRAWLGYYNGNLRKAGWDKKTLVQEANQ-WAKDI-------GLKEQPKLLKKTVGKMGLKGVPGLLLE 634          
BLAST of mRNA_M-pyrifera_M_contig95642.22055.1 vs. uniprot
Match: A0A5A8E470_CAFRO (Uncharacterized protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8E470_CAFRO)

HSP 1 Score: 137 bits (346), Expect = 2.860e-34
Identity = 103/244 (42.21%), Postives = 129/244 (52.87%), Query Frame = 1
Query:    1 RNSQAARARASKQFRDADGGAFLFSSDVSARGMDYPGVTAVVQFGLTSREQYIHRLGRTARAGKAGGGLLLVAPEEARALLG-----PTWPPKRPTEVGEVKAGDLKGLPLVPST--------ADSTLTGGAAAGIRVTHGV--------------------------AFVAWLGFYNSNLRRLKWDKATLVANANALWADGSDPVPLFGGLAQPPTLPRKTVGKMGLRGTPGLIEEAKGARGG 615
            R SQA R RA+  F+ A   A LFSSDVSARGMD+P VT V+Q GLT REQYIHRLGRTARAGKAG G L++ P+EA  + G     P   P  P       +    GL L P+         AD++  G  A  I    G+                          A+ +W+G+Y    R++ W  A +VA AN  W  G+  +    GL + P L R+TVGKMGLRG PG+ EEAKG+ GG
Sbjct:  291 RKSQAQRMRAADTFKSAPK-AILFSSDVSARGMDFPDVTMVMQVGLTDREQYIHRLGRTARAGKAGRGCLVLLPDEAAHMAGMLRGLPIRSPLDPASTAIPGSIADAGLHLAPARGGPWPMAHADASGPGAGAEHIAAAIGMVGGGTGAGPVRASASDRDSMASLAAMAYSSWIGYYKGAARKVGWSPAQMVAVAND-WFAGAGGL----GLREVPILQRRTVGKMGLRGVPGIREEAKGSGGG 528          
BLAST of mRNA_M-pyrifera_M_contig95642.22055.1 vs. uniprot
Match: A9TI18_PHYPA (Predicted protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9TI18_PHYPA)

HSP 1 Score: 134 bits (338), Expect = 1.190e-33
Identity = 98/203 (48.28%), Postives = 115/203 (56.65%), Query Frame = 1
Query:    1 RNSQAARARASKQFRDADGGAFLFSSDVSARGMDYPGVTAVVQFGL-TSREQYIHRLGRTARAGKAGGGLLLVAPEEA---RALLGPTWPPKRPTEVG-EVKAGDLKGLPLVPSTADSTLTGGAAAGIRVTHGVAFVAWLGFYNSNLRRLKWDKATLVANANALWADGSDPVPLFG---GLAQPPTLPRKTVGKMGLRGTPGL 585
            R SQ+ R +AS +FR+  GG  +F+SDVSARG+DYP VT VVQ G   SREQYIHRLGRT RAGK G GLLL+ P E    R+L   T    + TEV  +++A   K L  +     S                A+ AWLG+YNS  R LKWDK TLV  AN           LF    GL QPP L +KTVG MGLR  PGL
Sbjct:  302 RKSQSFRTKASNEFRNHPGGVIMFTSDVSARGVDYPDVTFVVQVGTPASREQYIHRLGRTGRAGKEGRGLLLLTPWEEVFLRSLNDITITQSKGTEVSPDIEAKVNKALGYIDEDTKSK---------------AYQAWLGYYNS-CRLLKWDKQTLVKRAN-----------LFSSTLGLRQPPALLKKTVGMMGLRNVPGL 477          
BLAST of mRNA_M-pyrifera_M_contig95642.22055.1 vs. uniprot
Match: A0A5A8D4G7_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8D4G7_CAFRO)

HSP 1 Score: 135 bits (341), Expect = 1.400e-33
Identity = 101/241 (41.91%), Postives = 127/241 (52.70%), Query Frame = 1
Query:    1 RNSQAARARASKQFRDADGGAFLFSSDVSARGMDYPGVTAVVQFGLTSREQYIHRLGRTARAGKAGGGLLLVAPEEARALLG-----PTWPPKRPTEVGEVKAGDLKGLPLVPST--------ADSTLTGGAAAGIRVTHGV--------------------------AFVAWLGFYNSNLRRLKWDKATLVANANALWADGSDPVPLFGGLAQPPTLPRKTVGKMGLRGTPGLIEEAKGA 606
            R SQA R RA+  F+ A   A LFSSDVSARGMD+P VT V+Q GLT REQYIHRLGRTARAGKAG G L++ P+EA  + G     P   P  P       +    GL L P+         AD++  G  A  I    G+                          A+ +W+G+Y    R++ W  A +VA AN  W  G+  +    GL + P L R+TVGKMGLRG PG+ EEAKG+
Sbjct:  291 RKSQAQRMRAADTFKSAPK-AILFSSDVSARGMDFPDVTMVMQVGLTDREQYIHRLGRTARAGKAGRGCLVLLPDEAAHMAGMLRGLPIRSPLDPASTAIPGSIADAGLHLAPARGGPWPMAHADASGPGAGAEHIAAAIGMVGGGTGAGPVRASASDRDSMASLAAMAYSSWIGYYKGAARKVGWSPAQMVAVAND-WFAGAGGL----GLREVPILQRRTVGKMGLRGVPGIREEAKGS 525          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig95642.22055.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
F0YP59_AURAN1.470e-4251.18Helicase C-terminal domain-containing protein (Fra... [more]
A0A7S2LSU6_9STRA2.050e-3845.89Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7S1C442_9STRA4.540e-3645.93Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A7S2S2Y5_9STRA7.480e-3645.97Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A2P6VP19_9CHLO1.180e-3548.56DEAD-box ATP-dependent RNA helicase 25-like n=1 Ta... [more]
A0A7S4AEW1_9STRA1.480e-3546.89Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A7S3DXD7_9STRA3.780e-3546.53Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A5A8E470_CAFRO2.860e-3442.21Uncharacterized protein n=3 Tax=Cafeteria roenberg... [more]
A9TI18_PHYPA1.190e-3348.28Predicted protein n=1 Tax=Physcomitrium patens Tax... [more]
A0A5A8D4G7_CAFRO1.400e-3341.91Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig95642contigM-pyrifera_M_contig95642:3..728 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score156.4
Seed ortholog evalue1.5e-35
Seed eggNOG ortholog44056.XP_009042201.1
Preferred nameMSS116
KEGG koko:K17679
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0000372,GO:0000373,GO:0000375,GO:0000376,GO:0000377,GO:0000959,GO:0000963,GO:0003674,GO:0003676,GO:0003723,GO:0003724,GO:0003725,GO:0003727,GO:0003729,GO:0003824,GO:0004004,GO:0004386,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005739,GO:0005759,GO:0006139,GO:0006351,GO:0006354,GO:0006390,GO:0006392,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008026,GO:0008144,GO:0008150,GO:0008152,GO:0008186,GO:0008380,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0010501,GO:0016070,GO:0016071,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0018130,GO:0019438,GO:0030554,GO:0031974,GO:0031981,GO:0032553,GO:0032555,GO:0032559,GO:0032774,GO:0033592,GO:0034337,GO:0034641,GO:0034645,GO:0034654,GO:0035639,GO:0036094,GO:0042623,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0070035,GO:0071704,GO:0090304,GO:0090615,GO:0097159,GO:0097367,GO:0097617,GO:0097659,GO:0140053,GO:0140098,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901576
EggNOG free text desc.helicase activity
EggNOG OGsCOG0513@1,KOG0342@2759
EC3.6.4.13
COG Functional cat.JKL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03029
Exons2
Model size624
Cds size624
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816870.892905-CDS-M-pyrifera_M_contig95642:2..2391622816870.892905-CDS-M-pyrifera_M_contig95642:2..239Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig95642 3..239 -
1692278227.2653975-CDS-M-pyrifera_M_contig95642:2..2391692278227.2653975-CDS-M-pyrifera_M_contig95642:2..239Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig95642 3..239 -
1622816870.9036276-CDS-M-pyrifera_M_contig95642:341..7281622816870.9036276-CDS-M-pyrifera_M_contig95642:341..728Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig95642 342..728 -
1692278227.2790427-CDS-M-pyrifera_M_contig95642:341..7281692278227.2790427-CDS-M-pyrifera_M_contig95642:341..728Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig95642 342..728 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig95642.22055.1prot_M-pyrifera_M_contig95642.22055.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig95642 3..728 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig95642.22055.1

>prot_M-pyrifera_M_contig95642.22055.1 ID=prot_M-pyrifera_M_contig95642.22055.1|Name=mRNA_M-pyrifera_M_contig95642.22055.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=208bp
RNSQAARARASKQFRDADGGAFLFSSDVSARGMDYPGVTAVVQFGLTSRE
QYIHRLGRTARAGKAGGGLLLVAPEEARALLGPTWPPKRPTEVGEVKAGD
LKGLPLVPSTADSTLTGGAAAGIRVTHGVAFVAWLGFYNSNLRRLKWDKA
TLVANANALWADGSDPVPLFGGLAQPPTLPRKTVGKMGLRGTPGLIEEAK
GARGGGGG
back to top

mRNA from alignment at M-pyrifera_M_contig95642:3..728-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig95642.22055.1 ID=mRNA_M-pyrifera_M_contig95642.22055.1|Name=mRNA_M-pyrifera_M_contig95642.22055.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=726bp|location=Sequence derived from alignment at M-pyrifera_M_contig95642:3..728- (Macrocystis pyrifera P11B4 male)
CGCAATTCCCAGGCAGCACGCGCGCGGGCCTCCAAGCAGTTTAGAGACGC AGACGGAGGCGCGTTCCTCTTCTCCTCCGACGTGTCGGCGCGAGGCATGG ACTATCCGGGAGTCACTGCCGTGGTGCAGTTCGGGCTGACGTCGAGGGAG CAGTACATCCACAGACTGGGTCGCACAGCTCGTGCAGGCAAAGCTGGGGG AGGCTTGCTCTTGGTGGCTCCAGAAGAGGCCAGAGCTCTGCTTGGCCCGA CGTGGCCACCGAAGCGACCGACAGAGGTCGGAGAAGTGAAGGCAGGAGAC CTCAAGGGACTGCCGCTCGTGCCCTCCACTGCTGACTCGACGCTCACTGG AGGTGCTGCAGCTGGGATTCGAGTCACCCACGGCGTGGTGAGCCAAGACG AAGCCGCTGAGGACGATGTTGCCTCCGCACTCGTGGCGCAGCTTCGTGAC GTGGCAGCCGGACGCAAGGGTGTGGGCGACGCCACCAAGGCCTTTGTCGC GTGGCTCGGCTTCTACAACTCCAACCTGCGCCGCCTCAAGTGGGACAAGG CCACACTCGTCGCCAACGCCAACGCGCTCTGGGCCGACGGAAGTGACCCA GTCCCGCTCTTTGGTGGGCTCGCCCAACCTCCCACGCTGCCCCGAAAGAC GGTCGGGAAGATGGGACTGCGAGGCACCCCAGGACTGATCGAGGAGGCCA AGGGAGCAAGAGGGGGTGGGGGAGGA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig95642:3..728-

>mRNA_M-pyrifera_M_contig95642.22055.1 ID=mRNA_M-pyrifera_M_contig95642.22055.1|Name=mRNA_M-pyrifera_M_contig95642.22055.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1248bp|location=Sequence derived from alignment at M-pyrifera_M_contig95642:3..728- (Macrocystis pyrifera P11B4 male)
CGCAATTCCCAGGCAGCACGCGCGCGGGCCTCCAAGCAGTTTAGAGACGC
AGACGGAGGCGCGTTCCTCTTCTCCTCCGACGTGTCGGCGCGAGGCATGG
ACTATCCGGGAGTCACTGCCGTGGTGCAGTTCGGGCTGACGTCGAGGGAG
CAGTACATCCACAGACTGGGTCGCACAGCTCGTGCAGGCAAAGCTGGGGG
AGGCTTGCTCTTGGTGGCTCCAGAAGAGGCCAGAGCTCTGCTTGGCCCGA
CGTGGCCACCGAAGCGACCGACAGAGGTCGGAGAAGTGAAGGCAGGAGAC
CTCAAGGGACTGCCGCTCGTGCCCTCCACTGCTGACTCGACGCTCACTGG
AGGTGCTGCAGCTGGGATTCGAGTCACCCACGGCGTGCGCAATTCCCAGG
CAGCACGCGCGCGGGCCTCCAAGCAGTTTAGAGACGCAGACGGAGGCGCG
TTCCTCTTCTCCTCCGACGTGTCGGCGCGAGGCATGGACTATCCGGGAGT
CACTGCCGTGGTGCAGTTCGGGCTGACGTCGAGGGAGCAGTACATCCACA
GACTGGGTCGCACAGCTCGTGCAGGCAAAGCTGGGGGAGGCTTGCTCTTG
GTGGCTCCAGAAGAGGCCAGAGCTCTGCTTGGCCCGACGTGGCCACCGAA
GCGACCGACAGAGGTCGGAGAAGTGAAGGCAGGAGACCTCAAGGGACTGC
CGCTCGTGCCCTCCACTGCTGACTCGACGCTCACTGGAGGTGCTGCAGCT
GGGATTCGAGTCACCCACGGCGTGGCCTTTGTCGCGTGGCTCGGCTTCTA
CAACTCCAACCTGCGCCGCCTCAAGTGGGACAAGGCCACACTCGTCGCCA
ACGCCAACGCGCTCTGGGCCGACGGAAGTGACCCAGTCCCGCTCTTTGGT
GGGCTCGCCCAACCTCCCACGCTGCCCCGAAAGACGGTCGGGAAGATGGG
ACTGCGAGGCACCCCAGGACTGATCGAGGAGGCCAAGGGAGCAAGAGGGG
GTGGGGGAGGAGCCTTTGTCGCGTGGCTCGGCTTCTACAACTCCAACCTG
CGCCGCCTCAAGTGGGACAAGGCCACACTCGTCGCCAACGCCAACGCGCT
CTGGGCCGACGGAAGTGACCCAGTCCCGCTCTTTGGTGGGCTCGCCCAAC
CTCCCACGCTGCCCCGAAAGACGGTCGGGAAGATGGGACTGCGAGGCACC
CCAGGACTGATCGAGGAGGCCAAGGGAGCAAGAGGGGGTGGGGGAGGA
back to top