mRNA_M-pyrifera_M_contig95603.22043.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig95603.22043.1
Unique NamemRNA_M-pyrifera_M_contig95603.22043.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig95603.22043.1 vs. uniprot
Match: A0A849HW34_9GAMM (DUF2807 domain-containing protein n=1 Tax=Legionellales bacterium TaxID=2026754 RepID=A0A849HW34_9GAMM)

HSP 1 Score: 119 bits (298), Expect = 4.720e-30
Identity = 59/162 (36.42%), Postives = 105/162 (64.81%), Query Frame = 1 
Query:   13 GILTKQATTLP-FDSVAIHGPFDVNIRLIPQQHYIN--------YTGNASLVDLVSYYVQDNVLHVLADQRFTYNPSLKMMLTIETP-SVQRLHYQGSGKVSLMNINEDSFVADIDGSGYVYLTGKVTRFDATVSGSAHMDAKCLLARTIFVNTADSGQAEI 468
            G+ T +A  +P FDS++ +GP+++N +      Y+N         TG++++VD     V++N L ++ D ++TY+ ++ + +TI+T   ++R+ Y G+GK+ + NI  D F A ++GSGY++L GKV RFD T +G++ ++AKC+++   FVNT D  QAE+
Sbjct:   44 GLPTSRAYNMPYFDSISTNGPYNINFQFNTNP-YLNPNTVGNVAITGDSAIVDNTEVLVKNNNLLIMLDPQYTYDMAVNVNVTIQTSVPLRRISYTGTGKIDIQNIRVDHFAATVNGSGYMFLAGKVNRFDGTATGTSRLNAKCVISEATFVNTTDLAQAEV 204
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BLAST of mRNA_M-pyrifera_M_contig95603.22043.1 vs. uniprot
Match: A0A2E3MFV1_9GAMM (DUF2807 domain-containing protein n=1 Tax=Legionellales bacterium TaxID=2026754 RepID=A0A2E3MFV1_9GAMM)

HSP 1 Score: 90.1 bits (222), Expect = 5.950e-19
Identity = 52/155 (33.55%), Postives = 86/155 (55.48%), Query Frame = 1 
Query:   34 TTLPFDSVAIHGPFDVNIRLIPQQHYI----NYTGNASLVDLVSYYVQDNVLHVLADQRFTYNPSLKMMLTIETPSVQRLHYQGSGKVSLMNINEDSFVADIDGSGYVYLTGKVTRFDATVSGSAHMDAKCLLARTIFVNTADSGQAEIA-SNGL 483
            T  PFDSV I G FDV I+  P ++ +    ++T         +++VQ+  L+V  D +   +   K+ L I+ P ++ +H  G+    +  +    F  +I+ SG + + G   RF+ATVS  + ++A+C+ A T+FVNT D+ QAE+  SNGL
Sbjct:   43 TCPPFDSVNIVGDFDVTIQQTPDKYQLKVISDHTKMTKYPRRTTHWVQNRTLYVRVDPKNPGSRGDKVRLIIDAPKLKDVHLNGTPNGKISYVTGPEFSLNIENSGLILIAGNTRRFNATVSEHSKLNARCMRAYTLFVNTVDNAQAEVTNSNGL 197
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BLAST of mRNA_M-pyrifera_M_contig95603.22043.1 vs. uniprot
Match: A0A7C2NI74_9BACT (DUF2807 domain-containing protein n=1 Tax=Ignavibacteria bacterium TaxID=2053306 RepID=A0A7C2NI74_9BACT)

HSP 1 Score: 58.2 bits (139), Expect = 2.770e-7
Identity = 32/154 (20.78%), Postives = 75/154 (48.70%), Query Frame = 1 
Query:    7 AGGILTKQATTLPFDSVAIHGPFDVNIRLIPQQHYINYTGNASLVDLVSYYVQDNVLHVLADQRFTYNPSLKMMLTIETPSVQRLHYQGSGKVSLMNINEDSFVADIDGSGYVYLTGKVTRFDATVSGSAHMDAKCLLARTIFVNTADSGQAEI 468
            +G ++T+Q     F+ + + G +++ + L+  +  +  +   +L   +   V +N L +   +     P  K+ + I  P ++ +   G   +    I+E  F+ D+ G+G++ L GKV +F         ++AK L AR + ++++ +  A++
Sbjct:   27 SGNVVTEQRLIEDFNKLEVSGAYNIEV-LVGLETSLEISAEDNLQQYILTEVINNKLRIENSRAIA--PKRKIRINITVPDLEEISSSGVSNIYAAGIDEQEFLLDLSGAGFIELQGKVEQFXXXXXXXXRLEAKELFARFVDISSSGASNADV 177
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BLAST of mRNA_M-pyrifera_M_contig95603.22043.1 vs. uniprot
Match: A0A2E1AHT3_9CHLR (DUF2807 domain-containing protein n=1 Tax=Anaerolineaceae bacterium TaxID=2024896 RepID=A0A2E1AHT3_9CHLR)

HSP 1 Score: 54.7 bits (130), Expect = 5.300e-6
Identity = 39/155 (25.16%), Postives = 75/155 (48.39%), Query Frame = 1 
Query:    7 AGGILTKQATTLPFDSVAIHGPFDVNIRLIPQQHYINYTGNASLVDLVSYYVQDNVLHV-LADQRFTYNPSLKMMLTIETPSVQRLHYQGSGKVSLMNINEDSFVADIDGSGYVYLTGKVTRFDATVSGSAHMDAKCLLARTIFVNTADSGQAEI 468
            +G I+T+      F  V +    +V I  + +   +  T   +L+ L+   V+D+VL + L D   +Y     +  TI  PS+  ++  G+G +++ N++ ++FVADI G G +   G V+     +SG        +++ T  +  A  G A++
Sbjct:   28 SGEIVTETRDVGTFTGVQLTDTGEVTIT-VGEPQSVAITTYENLLPLLVTRVEDDVLIIDLVDDDTSYITDTPIAYTISVPSLDYVNLDGTGNITIHNLDNETFVADIPGPGNLIANGTVSEQTIDISGLGSYYGFEVVSETTTITLAGPGIAQV 181
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BLAST of mRNA_M-pyrifera_M_contig95603.22043.1 vs. uniprot
Match: A0A098UDP7_9BURK (Uncharacterized protein n=4 Tax=Massilia TaxID=149698 RepID=A0A098UDP7_9BURK)

HSP 1 Score: 52.0 bits (123), Expect = 6.980e-5
Identity = 33/136 (24.26%), Postives = 72/136 (52.94%), Query Frame = 1 
Query:   13 GILTKQATTLP-FDSVAIHGPFDVNIRLIPQQHYINYTGNASLVDLVSYYVQDNVLHVLADQRFTYNPSLKMMLTIETPSVQRLHYQGSGKVSLMNINEDSFVADIDGSGYVYLTGKVTRFDATVSGSAHMDAKCL 417
            G+L +   T+    ++ ++G   V++R+ P    +    +++L+  +   ++ + L +  ++ F  N  +++  T+  P +  + + GSG +S+ ++N    V +  GSG V LTG+V+  D + +GS  +DA  L
Sbjct:   44 GVLARDERTIATVPALEVNGTITVDVRVGPATSLV-VEADSNLLPFIRTELRGDRLVIEKERSFRTNNPVRVTYTV--PRLTSVRHDGSGHLSVQDLNGGPLVVEGRGSGSVLLTGRVSSLDVSQNGSGTIDATTL 176
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig95603.22043.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A849HW34_9GAMM4.720e-3036.42DUF2807 domain-containing protein n=1 Tax=Legionel... [more]
A0A2E3MFV1_9GAMM5.950e-1933.55DUF2807 domain-containing protein n=1 Tax=Legionel... [more]
A0A7C2NI74_9BACT2.770e-720.78DUF2807 domain-containing protein n=1 Tax=Ignaviba... [more]
A0A2E1AHT3_9CHLR5.300e-625.16DUF2807 domain-containing protein n=1 Tax=Anaeroli... [more]
A0A098UDP7_9BURK6.980e-524.26Uncharacterized protein n=4 Tax=Massilia TaxID=149... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig95603contigM-pyrifera_M_contig95603:1..483 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score71.6
Seed ortholog evalue3.7e-10
Seed eggNOG ortholog933262.AXAM01000032_gene700
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Putative auto-transporter adhesin, head GIN domain
EggNOG OGs1PVAS@1224,2MP9S@213118,2WT1C@28221,42XDC@68525,COG3595@1,COG3595@2
COG Functional cat.S
Best tax levelDesulfobacterales
Best eggNOG OGNA|NA|NA
Exons1
Model size483
Cds size483
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816870.3561378-CDS-M-pyrifera_M_contig95603:0..4831622816870.3561378-CDS-M-pyrifera_M_contig95603:0..483Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig95603 1..483 -
1692278226.9965847-CDS-M-pyrifera_M_contig95603:0..4831692278226.9965847-CDS-M-pyrifera_M_contig95603:0..483Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig95603 1..483 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig95603.22043.1prot_M-pyrifera_M_contig95603.22043.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig95603 1..483 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig95603.22043.1

>prot_M-pyrifera_M_contig95603.22043.1 ID=prot_M-pyrifera_M_contig95603.22043.1|Name=mRNA_M-pyrifera_M_contig95603.22043.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=161bp
MIAGGILTKQATTLPFDSVAIHGPFDVNIRLIPQQHYINYTGNASLVDLV
SYYVQDNVLHVLADQRFTYNPSLKMMLTIETPSVQRLHYQGSGKVSLMNI
NEDSFVADIDGSGYVYLTGKVTRFDATVSGSAHMDAKCLLARTIFVNTAD
SGQAEIASNGL
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mRNA from alignment at M-pyrifera_M_contig95603:1..483-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig95603.22043.1 ID=mRNA_M-pyrifera_M_contig95603.22043.1|Name=mRNA_M-pyrifera_M_contig95603.22043.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=483bp|location=Sequence derived from alignment at M-pyrifera_M_contig95603:1..483- (Macrocystis pyrifera P11B4 male)
ATGATAGCAGGTGGAATTTTAACCAAGCAAGCGACAACGTTGCCATTTGA
TTCCGTTGCTATTCACGGACCGTTTGATGTGAACATTCGTTTGATCCCGC
AGCAGCACTACATCAATTACACAGGTAATGCGTCTTTGGTCGATTTAGTA
TCTTATTATGTACAAGATAATGTATTACATGTTTTAGCGGATCAGCGCTT
CACATATAACCCAAGTTTGAAAATGATGCTGACAATAGAAACACCATCAG
TACAGCGATTGCACTATCAAGGTTCTGGCAAAGTGAGTTTGATGAACATC
AACGAAGATTCATTTGTGGCGGATATTGATGGAAGTGGCTATGTTTATTT
AACTGGCAAAGTAACTCGGTTCGACGCAACCGTATCCGGCAGTGCGCACA
TGGATGCTAAATGTTTATTAGCTCGCACTATCTTTGTGAATACCGCAGAC
TCTGGGCAAGCTGAAATTGCCAGTAATGGCTTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig95603:1..483-

>mRNA_M-pyrifera_M_contig95603.22043.1 ID=mRNA_M-pyrifera_M_contig95603.22043.1|Name=mRNA_M-pyrifera_M_contig95603.22043.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=966bp|location=Sequence derived from alignment at M-pyrifera_M_contig95603:1..483- (Macrocystis pyrifera P11B4 male)
ATGATAGCAGGTGGAATTTTAACCAAGCAAGCGACAACGTTGCCATTTGA
TTCCGTTGCTATTCACGGACCGTTTGATGTGAACATTCGTTTGATCCCGC
AGCAGCACTACATCAATTACACAGGTAATGCGTCTTTGGTCGATTTAGTA
TCTTATTATGTACAAGATAATGTATTACATGTTTTAGCGGATCAGCGCTT
CACATATAACCCAAGTTTGAAAATGATGCTGACAATAGAAACACCATCAG
TACAGCGATTGCACTATCAAGGTTCTGGCAAAGTGAGTTTGATGAACATC
AACGAAGATTCATTTGTGGCGGATATTGATGGAAGTGGCTATGTTTATTT
AACTGGCAAAGTAACTCGGTTCGACGCAACCGTATCCGGCAGTGCGCACA
TGGATGCTAAATGTTTATTAGCTCGCACTATCTTTGTGAATACCGCAGAC
TCTGGGCAAGCTGAAATTGCCAGTAATGGCTTGATGATAGCAGGTGGAAT
TTTAACCAAGCAAGCGACAACGTTGCCATTTGATTCCGTTGCTATTCACG
GACCGTTTGATGTGAACATTCGTTTGATCCCGCAGCAGCACTACATCAAT
TACACAGGTAATGCGTCTTTGGTCGATTTAGTATCTTATTATGTACAAGA
TAATGTATTACATGTTTTAGCGGATCAGCGCTTCACATATAACCCAAGTT
TGAAAATGATGCTGACAATAGAAACACCATCAGTACAGCGATTGCACTAT
CAAGGTTCTGGCAAAGTGAGTTTGATGAACATCAACGAAGATTCATTTGT
GGCGGATATTGATGGAAGTGGCTATGTTTATTTAACTGGCAAAGTAACTC
GGTTCGACGCAACCGTATCCGGCAGTGCGCACATGGATGCTAAATGTTTA
TTAGCTCGCACTATCTTTGTGAATACCGCAGACTCTGGGCAAGCTGAAAT
TGCCAGTAATGGCTTG
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