mRNA_M-pyrifera_M_contig95582.22033.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig95582.22033.1
Unique NamemRNA_M-pyrifera_M_contig95582.22033.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig95582.22033.1 vs. uniprot
Match: D7G3J7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3J7_ECTSI)

HSP 1 Score: 82.8 bits (203), Expect = 3.120e-17
Identity = 36/49 (73.47%), Postives = 40/49 (81.63%), Query Frame = 1 
Query:    1 CDPSAECVNTIGSYKCSCPLGEACVPWSGAGFCQNVTSSADCCTVDEEQ 147
            C  SAECVNTIGSY+CSCP  EACVP SG G+C  + SSADCCTVDEE+
Sbjct:  136 CHASAECVNTIGSYECSCPGREACVPRSGLGYCTGINSSADCCTVDEEK 184
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig95582.22033.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G3J7_ECTSI3.120e-1773.47Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig95582contigM-pyrifera_M_contig95582:372..524 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score83.6
Seed ortholog evalue3e-14
Seed eggNOG ortholog2880.D7G3J7
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.EGF domain, unclasssified subfamily
EggNOG OGs2A3HA@1,2RY5A@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size153
Cds size153
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816869.7699175-CDS-M-pyrifera_M_contig95582:371..5241622816869.7699175-CDS-M-pyrifera_M_contig95582:371..524Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig95582 372..524 -
1692278226.5905964-CDS-M-pyrifera_M_contig95582:371..5241692278226.5905964-CDS-M-pyrifera_M_contig95582:371..524Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig95582 372..524 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig95582.22033.1prot_M-pyrifera_M_contig95582.22033.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig95582 372..524 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig95582.22033.1

>prot_M-pyrifera_M_contig95582.22033.1 ID=prot_M-pyrifera_M_contig95582.22033.1|Name=mRNA_M-pyrifera_M_contig95582.22033.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=51bp
CDPSAECVNTIGSYKCSCPLGEACVPWSGAGFCQNVTSSADCCTVDEEQV
*
back to top

mRNA from alignment at M-pyrifera_M_contig95582:372..524-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig95582.22033.1 ID=mRNA_M-pyrifera_M_contig95582.22033.1|Name=mRNA_M-pyrifera_M_contig95582.22033.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=153bp|location=Sequence derived from alignment at M-pyrifera_M_contig95582:372..524- (Macrocystis pyrifera P11B4 male)
TGCGACCCTAGCGCCGAGTGCGTCAACACGATCGGCTCCTACAAGTGCTC
GTGCCCGCTGGGAGAGGCTTGCGTGCCCTGGTCGGGGGCCGGTTTCTGCC
AGAACGTCACTTCCAGCGCAGATTGCTGTACCGTGGACGAGGAACAGGTG
TGA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig95582:372..524-

>mRNA_M-pyrifera_M_contig95582.22033.1 ID=mRNA_M-pyrifera_M_contig95582.22033.1|Name=mRNA_M-pyrifera_M_contig95582.22033.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=306bp|location=Sequence derived from alignment at M-pyrifera_M_contig95582:372..524- (Macrocystis pyrifera P11B4 male)
TGCGACCCTAGCGCCGAGTGCGTCAACACGATCGGCTCCTACAAGTGCTC
GTGCCCGCTGGGAGAGGCTTGCGTGCCCTGGTCGGGGGCCGGTTTCTGCC
AGAACGTCACTTCCAGCGCAGATTGCTGTACCGTGGACGAGGAACAGGTG
TGATGCGACCCTAGCGCCGAGTGCGTCAACACGATCGGCTCCTACAAGTG
CTCGTGCCCGCTGGGAGAGGCTTGCGTGCCCTGGTCGGGGGCCGGTTTCT
GCCAGAACGTCACTTCCAGCGCAGATTGCTGTACCGTGGACGAGGAACAG
GTGTGA
back to top