mRNA_M-pyrifera_M_contig95540.22026.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig95540.22026.1
Unique NamemRNA_M-pyrifera_M_contig95540.22026.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig95540.22026.1 vs. uniprot
Match: A0A518A5H4_9PLAN (Cytochrome b6 n=8 Tax=Gimesia TaxID=1649453 RepID=A0A518A5H4_9PLAN)

HSP 1 Score: 269 bits (687), Expect = 1.900e-84
Identity = 125/139 (89.93%), Postives = 133/139 (95.68%), Query Frame = 1
Query:    1 GILTKEDVEAVAALVAREAKRRDYVKPSQEVIQRGISVFSGVDFKDKAGKVVEFYGYCAQCHAMKAGDPNEEGGGAAPDFNGYGSEKWLIDFIRKPGAEHFYGEKNIMPSFEESKISEHDIKLLVKWMRGEWQRPTEEK 417
            G+LTKED+EAVAAL+AREAKRRDY +PS+ VIQRGISVFSGVDFKDK+GKVVEFYGYCAQCHAMKAGDPNEEGGGAAPDFNGYGSEKWL DFIR PGAEHFYGEKNIMPSFEESK+S+HDI LLVKWMR EWQRPTEEK
Sbjct:  527 GVLTKEDLEAVAALIAREAKRRDYEQPSEAVIQRGISVFSGVDFKDKSGKVVEFYGYCAQCHAMKAGDPNEEGGGAAPDFNGYGSEKWLTDFIRNPGAEHFYGEKNIMPSFEESKLSKHDINLLVKWMRSEWQRPTEEK 665          
BLAST of mRNA_M-pyrifera_M_contig95540.22026.1 vs. uniprot
Match: A0A3C0ANB8_9PLAN (Cytochrome c domain-containing protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A3C0ANB8_9PLAN)

HSP 1 Score: 245 bits (626), Expect = 3.740e-81
Identity = 111/139 (79.86%), Postives = 126/139 (90.65%), Query Frame = 1
Query:    1 GILTKEDVEAVAALVAREAKRRDYVKPSQEVIQRGISVFSGVDFKDKAGKVVEFYGYCAQCHAMKAGDPNEEGGGAAPDFNGYGSEKWLIDFIRKPGAEHFYGEKNIMPSFEESKISEHDIKLLVKWMRGEWQRPTEEK 417
            GILTK+D+EAVAALVAREA  RD+   S+E ++RG+SVFSG+DFKDK+GKVV+FYGYCAQCHAMKAGDP EEGGG APDF GYGSEKWL DFIRKPGAE FYG+KNIMPSFEESK+S+HD+ LLVKWMRGEWQRP +EK
Sbjct:   44 GILTKDDIEAVAALVAREANHRDFKPLSEETVKRGVSVFSGIDFKDKSGKVVDFYGYCAQCHAMKAGDPEEEGGGPAPDFKGYGSEKWLTDFIRKPGAERFYGDKNIMPSFEESKLSKHDLNLLVKWMRGEWQRPEQEK 182          
BLAST of mRNA_M-pyrifera_M_contig95540.22026.1 vs. uniprot
Match: A0A3D3R6C6_9PLAN (Uncharacterized protein n=1 Tax=Gimesia maris TaxID=122 RepID=A0A3D3R6C6_9PLAN)

HSP 1 Score: 248 bits (633), Expect = 1.560e-79
Identity = 114/139 (82.01%), Postives = 125/139 (89.93%), Query Frame = 1
Query:    1 GILTKEDVEAVAALVAREAKRRDYVKPSQEVIQRGISVFSGVDFKDKAGKVVEFYGYCAQCHAMKAGDPNEEGGGAAPDFNGYGSEKWLIDFIRKPGAEHFYGEKNIMPSFEESKISEHDIKLLVKWMRGEWQRPTEEK 417
            GILTK D+EAVAALVAREA  RD+   S+E ++RG+SVFSG+DFKDK+GKV EFYGYCAQCHAMKAGDP EEGGGAAPDFNGYGSEKWL DFIRKPGAE FYGEKNIMPSFEESK+S+HD+ LLVKWMRGEWQRP  EK
Sbjct:  239 GILTKADIEAVAALVAREANHRDFKPLSEETVKRGVSVFSGIDFKDKSGKVAEFYGYCAQCHAMKAGDPEEEGGGAAPDFNGYGSEKWLTDFIRKPGAERFYGEKNIMPSFEESKLSKHDLNLLVKWMRGEWQRPETEK 377          
BLAST of mRNA_M-pyrifera_M_contig95540.22026.1 vs. uniprot
Match: A0A517V8Y2_9PLAN (Cytochrome b6 n=8 Tax=Planctomycetaceae TaxID=126 RepID=A0A517V8Y2_9PLAN)

HSP 1 Score: 251 bits (640), Expect = 1.730e-77
Identity = 115/139 (82.73%), Postives = 128/139 (92.09%), Query Frame = 1
Query:    1 GILTKEDVEAVAALVAREAKRRDYVKPSQEVIQRGISVFSGVDFKDKAGKVVEFYGYCAQCHAMKAGDPNEEGGGAAPDFNGYGSEKWLIDFIRKPGAEHFYGEKNIMPSFEESKISEHDIKLLVKWMRGEWQRPTEEK 417
            GILTK D+EAVAALVAREA RRD+   S+EV++RGISVFSG+DFKDK+GKV EFYGYCAQCHAMKAGDP EEGGGAAPDFNGYGSEKWL DFIRKPGAE FYG+KNIMP+FEESK+S+HD+ LLVKWMRGEWQRP +EK
Sbjct:  527 GILTKADIEAVAALVAREANRRDFKPLSEEVVKRGISVFSGIDFKDKSGKVAEFYGYCAQCHAMKAGDPEEEGGGAAPDFNGYGSEKWLADFIRKPGAERFYGDKNIMPAFEESKLSKHDLNLLVKWMRGEWQRPEQEK 665          
BLAST of mRNA_M-pyrifera_M_contig95540.22026.1 vs. uniprot
Match: A0A518IBK2_9PLAN (Cytochrome b6 n=2 Tax=Gimesia TaxID=1649453 RepID=A0A518IBK2_9PLAN)

HSP 1 Score: 232 bits (591), Expect = 2.960e-70
Identity = 104/139 (74.82%), Postives = 124/139 (89.21%), Query Frame = 1
Query:    1 GILTKEDVEAVAALVAREAKRRDYVKPSQEVIQRGISVFSGVDFKDKAGKVVEFYGYCAQCHAMKAGDPNEEGGGAAPDFNGYGSEKWLIDFIRKPGAEHFYGEKNIMPSFEESKISEHDIKLLVKWMRGEWQRPTEEK 417
            G+L+KED+EAV+AL+AREAK R+    S+ V++RG+SVFSG+DFKDK+GKVV+F GYCAQCHAMKAGDP EEGGGAAPD NGYGS+KWL DFIR PGAEHFY +KNIMP+FEESK+S+HD+ LLV WMRGEW+RP EEK
Sbjct:  529 GVLSKEDIEAVSALIAREAKHRNAEPLSEAVMKRGVSVFSGIDFKDKSGKVVDFDGYCAQCHAMKAGDPEEEGGGAAPDLNGYGSDKWLSDFIRNPGAEHFYSDKNIMPAFEESKLSQHDLNLLVNWMRGEWRRPEEEK 667          
BLAST of mRNA_M-pyrifera_M_contig95540.22026.1 vs. uniprot
Match: A0A517VYB5_9PLAN (Cytochrome b6 n=2 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517VYB5_9PLAN)

HSP 1 Score: 226 bits (576), Expect = 4.540e-68
Identity = 104/139 (74.82%), Postives = 122/139 (87.77%), Query Frame = 1
Query:    1 GILTKEDVEAVAALVAREAKRRDYVKPSQEVIQRGISVFSGVDFKDKAGKVVEFYGYCAQCHAMKAGDPNEEGGGAAPDFNGYGSEKWLIDFIRKPGAEHFYGEKNIMPSFEESKISEHDIKLLVKWMRGEWQRPTEEK 417
            GIL+K D+EAV+AL+AREA RRDY   S+ VI+RGISVFSG +FK K GKVV+F GYCAQCHAMKAGDP++EGGGAAPDFNGYGS KWL +FIR PGAE FYG+KN+MP+FEESK+S+HD+ LLV WMRGEWQRPT +K
Sbjct:  527 GILSKADIEAVSALLAREANRRDYEPVSEAVIKRGISVFSGQNFKGKDGKVVDFDGYCAQCHAMKAGDPDDEGGGAAPDFNGYGSAKWLSEFIRSPGAEKFYGDKNVMPAFEESKLSKHDLNLLVNWMRGEWQRPTTDK 665          
BLAST of mRNA_M-pyrifera_M_contig95540.22026.1 vs. uniprot
Match: A0A355GLM6_9PLAN (Cytochrome c domain-containing protein (Fragment) n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A355GLM6_9PLAN)

HSP 1 Score: 89.4 bits (220), Expect = 3.100e-18
Identity = 41/57 (71.93%), Postives = 51/57 (89.47%), Query Frame = 1
Query:    1 GILTKEDVEAVAALVAREAKRRDYVKPSQEVIQRGISVFSGVDFKDKAGKVVEFYGY 171
            GILTK+D+EAVAALVAREA  RD+   S+E ++RG+SVFSG+DFKDK+GKVV+FYGY
Sbjct:  351 GILTKDDIEAVAALVAREANHRDFKPLSEETVKRGVSVFSGIDFKDKSGKVVDFYGY 407          
BLAST of mRNA_M-pyrifera_M_contig95540.22026.1 vs. uniprot
Match: A0A2E3ZB34_9PLAN (Menaquinol-cytochrome C reductase n=2 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E3ZB34_9PLAN)

HSP 1 Score: 75.5 bits (184), Expect = 3.500e-13
Identity = 46/134 (34.33%), Postives = 74/134 (55.22%), Query Frame = 1
Query:   31 VAALVAREAKRRDYVKPSQEVIQRGISVFSGVDFKDKAGKVVEFYGYCAQCHAMKAGDPNEEGGGAAPDFNGYGSEKWLIDFIRKPGAEHFYGEKNI-MPSF---EESKISEHD---IKLLVKWMRGEWQRPTE 411
            +AA ++ EA+  +  K  ++ I  G ++  G         +VE    C  CH+   G   + G   +P  +GY S  WL+DFIR P AE FYG+ N  MPSF   +++++++ D   + L+V W+RG+W RP+E
Sbjct:  534 IAAALSAEAQLPNQSKADEQTIAAGRALIEG-----GLANLVESGMSCTDCHSF--GQQQDIG---SPVLDGYMSRSWLMDFIRNPSAERFYGDLNDRMPSFAPHQDTRLNQLDDQSLGLIVDWLRGQWVRPSE 657          
BLAST of mRNA_M-pyrifera_M_contig95540.22026.1 vs. uniprot
Match: A0A2D8I105_9BACT (Menaquinol-cytochrome C reductase n=1 Tax=Opitutae bacterium TaxID=2026771 RepID=A0A2D8I105_9BACT)

HSP 1 Score: 72.4 bits (176), Expect = 4.070e-12
Identity = 35/75 (46.67%), Postives = 48/75 (64.00%), Query Frame = 1
Query:  172 CAQCHAMKAGDPNEEGGGAAPDFNGYGSEKWLIDFIRKPGAEHFYGEKNI-MPSF-EESKISEHDIKLLVKWMRG 390
            C  CH     D + EG G+APD  GYGS KW+IDFI  P  E FYG+KN  MP++  + K+S  +I+++V W+R 
Sbjct:  504 CIDCH-----DIDSEGEGSAPDLTGYGSRKWMIDFIVNPEHERFYGKKNDRMPAYGRDEKLSMEEIEIVVDWIRS 573          
BLAST of mRNA_M-pyrifera_M_contig95540.22026.1 vs. uniprot
Match: A0A2A4M5J7_9BACT (Menaquinol-cytochrome C reductase n=1 Tax=Verrucomicrobiales bacterium TaxID=2026801 RepID=A0A2A4M5J7_9BACT)

HSP 1 Score: 70.5 bits (171), Expect = 1.950e-11
Identity = 33/81 (40.74%), Postives = 47/81 (58.02%), Query Frame = 1
Query:  172 CAQCHAMKAGDPNEEGGGAAPDFNGYGSEKWLIDFIRKPGAEHFYGEKNI-MPSFEESKI-SEHDIKLLVKWMRGEWQRPT 408
            C  CHA    DP+ +G    PD  GYGS +W+IDF++ P  E FY + N  MP+F   KI ++  I L+  W+RG++  P 
Sbjct:  584 CIDCHAFGEPDPDADG----PDLTGYGSRRWIIDFVKNPEHEKFYPDNNDRMPAFGVKKILTDKQIGLIADWLRGDYFEPA 660          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig95540.22026.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A518A5H4_9PLAN1.900e-8489.93Cytochrome b6 n=8 Tax=Gimesia TaxID=1649453 RepID=... [more]
A0A3C0ANB8_9PLAN3.740e-8179.86Cytochrome c domain-containing protein n=1 Tax=Pla... [more]
A0A3D3R6C6_9PLAN1.560e-7982.01Uncharacterized protein n=1 Tax=Gimesia maris TaxI... [more]
A0A517V8Y2_9PLAN1.730e-7782.73Cytochrome b6 n=8 Tax=Planctomycetaceae TaxID=126 ... [more]
A0A518IBK2_9PLAN2.960e-7074.82Cytochrome b6 n=2 Tax=Gimesia TaxID=1649453 RepID=... [more]
A0A517VYB5_9PLAN4.540e-6874.82Cytochrome b6 n=2 Tax=Gimesia aquarii TaxID=252796... [more]
A0A355GLM6_9PLAN3.100e-1871.93Cytochrome c domain-containing protein (Fragment) ... [more]
A0A2E3ZB34_9PLAN3.500e-1334.33Menaquinol-cytochrome C reductase n=2 Tax=Planctom... [more]
A0A2D8I105_9BACT4.070e-1246.67Menaquinol-cytochrome C reductase n=1 Tax=Opitutae... [more]
A0A2A4M5J7_9BACT1.950e-1140.74Menaquinol-cytochrome C reductase n=1 Tax=Verrucom... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig95540contigM-pyrifera_M_contig95540:310..729 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score250.4
Seed ortholog evalue5.1e-64
Seed eggNOG ortholog344747.PM8797T_32375
Preferred nameqcrC
KEGG koko:K00412,ko:K03888
KEGG Pathwayko00190,ko01100,ko02020,ko04260,ko04714,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map02020,map04260,map04714,map04932,map05010,map05012,map05016
KEGG ModuleM00151,M00152
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Cytochrome b subunit of the bc complex
EggNOG OGs2IX9E@203682,COG1290@1,COG1290@2,COG2010@1,COG2010@2
COG Functional cat.C
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03029
Exons1
Model size420
Cds size420
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816869.241516-CDS-M-pyrifera_M_contig95540:309..7291622816869.241516-CDS-M-pyrifera_M_contig95540:309..729Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig95540 310..729 -
1692278226.2003155-CDS-M-pyrifera_M_contig95540:309..7291692278226.2003155-CDS-M-pyrifera_M_contig95540:309..729Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig95540 310..729 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig95540.22026.1prot_M-pyrifera_M_contig95540.22026.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig95540 310..729 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig95540.22026.1

>prot_M-pyrifera_M_contig95540.22026.1 ID=prot_M-pyrifera_M_contig95540.22026.1|Name=mRNA_M-pyrifera_M_contig95540.22026.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=140bp
GILTKEDVEAVAALVAREAKRRDYVKPSQEVIQRGISVFSGVDFKDKAGK
VVEFYGYCAQCHAMKAGDPNEEGGGAAPDFNGYGSEKWLIDFIRKPGAEH
FYGEKNIMPSFEESKISEHDIKLLVKWMRGEWQRPTEEK*
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mRNA from alignment at M-pyrifera_M_contig95540:310..729-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig95540.22026.1 ID=mRNA_M-pyrifera_M_contig95540.22026.1|Name=mRNA_M-pyrifera_M_contig95540.22026.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=420bp|location=Sequence derived from alignment at M-pyrifera_M_contig95540:310..729- (Macrocystis pyrifera P11B4 male)
GGGATCCTCACTAAAGAAGATGTCGAAGCGGTCGCAGCTCTCGTTGCGCG GGAAGCGAAACGGCGTGACTATGTGAAACCTTCGCAAGAAGTCATTCAGC GGGGTATTTCCGTCTTCAGCGGTGTGGACTTTAAAGATAAGGCAGGCAAA GTCGTCGAGTTCTATGGCTACTGCGCTCAGTGTCACGCTATGAAGGCTGG CGATCCCAACGAAGAGGGTGGGGGAGCCGCTCCAGACTTCAACGGCTACG GCTCTGAAAAGTGGCTGATCGATTTCATCCGTAAACCCGGAGCCGAGCAT TTCTACGGCGAGAAAAACATCATGCCTTCCTTTGAAGAGTCCAAAATCTC AGAGCATGATATTAAACTGCTCGTCAAGTGGATGCGTGGCGAATGGCAGC GTCCGACAGAGGAAAAATAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig95540:310..729-

>mRNA_M-pyrifera_M_contig95540.22026.1 ID=mRNA_M-pyrifera_M_contig95540.22026.1|Name=mRNA_M-pyrifera_M_contig95540.22026.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=840bp|location=Sequence derived from alignment at M-pyrifera_M_contig95540:310..729- (Macrocystis pyrifera P11B4 male)
GGGATCCTCACTAAAGAAGATGTCGAAGCGGTCGCAGCTCTCGTTGCGCG
GGAAGCGAAACGGCGTGACTATGTGAAACCTTCGCAAGAAGTCATTCAGC
GGGGTATTTCCGTCTTCAGCGGTGTGGACTTTAAAGATAAGGCAGGCAAA
GTCGTCGAGTTCTATGGCTACTGCGCTCAGTGTCACGCTATGAAGGCTGG
CGATCCCAACGAAGAGGGTGGGGGAGCCGCTCCAGACTTCAACGGCTACG
GCTCTGAAAAGTGGCTGATCGATTTCATCCGTAAACCCGGAGCCGAGCAT
TTCTACGGCGAGAAAAACATCATGCCTTCCTTTGAAGAGTCCAAAATCTC
AGAGCATGATATTAAACTGCTCGTCAAGTGGATGCGTGGCGAATGGCAGC
GTCCGACAGAGGAAAAATAAGGGATCCTCACTAAAGAAGATGTCGAAGCG
GTCGCAGCTCTCGTTGCGCGGGAAGCGAAACGGCGTGACTATGTGAAACC
TTCGCAAGAAGTCATTCAGCGGGGTATTTCCGTCTTCAGCGGTGTGGACT
TTAAAGATAAGGCAGGCAAAGTCGTCGAGTTCTATGGCTACTGCGCTCAG
TGTCACGCTATGAAGGCTGGCGATCCCAACGAAGAGGGTGGGGGAGCCGC
TCCAGACTTCAACGGCTACGGCTCTGAAAAGTGGCTGATCGATTTCATCC
GTAAACCCGGAGCCGAGCATTTCTACGGCGAGAAAAACATCATGCCTTCC
TTTGAAGAGTCCAAAATCTCAGAGCATGATATTAAACTGCTCGTCAAGTG
GATGCGTGGCGAATGGCAGCGTCCGACAGAGGAAAAATAA
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