mRNA_M-pyrifera_M_contig95450.22009.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig95450.22009.1
Unique NamemRNA_M-pyrifera_M_contig95450.22009.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig95450.22009.1 vs. uniprot
Match: A0A397TM77_9GLOM (Uncharacterized protein n=1 Tax=Glomus cerebriforme TaxID=658196 RepID=A0A397TM77_9GLOM)

HSP 1 Score: 58.2 bits (139), Expect = 1.580e-6
Identity = 42/126 (33.33%), Postives = 63/126 (50.00%), Query Frame = 1 
Query:   13 TKTEVVLELGVGLYNPSNVNILGVGSVCLDLFYNDTLSGEIVAQNADLLEGQNNVFFKGQLI---DTDPVLVSTMISTFLGGNASNVRGEGRHCDGTSPLFRAALASLALDTVLPG--SPIPLIRQ 375
            T   +++ L VGL+NPSNV I  +G V  DL + D   G+++ QN  L  G+NNV    Q     D        ++  F+ G ++ V  +G          + ALA+L L T +PG  +P P+I Q
Sbjct:  605 TAENMLINLSVGLFNPSNVKI-SMGDVVFDLNFQDQPMGKVIMQNFVLDRGENNVNVTAQFGPQGDAANKAGRELLDNFIIGKSNTVGIKGSTQSTPIASLQKALAALELTTSMPGLNTPKPIIEQ 729
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig95450.22009.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A397TM77_9GLOM1.580e-633.33Uncharacterized protein n=1 Tax=Glomus cerebriform... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig95450contigM-pyrifera_M_contig95450:2..580 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score99.4
Seed ortholog evalue2e-18
Seed eggNOG ortholog157072.XP_008868152.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Protein of unknown function (DUF3712)
EggNOG OGs2CUU2@1,2RP6J@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size579
Cds size579
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816868.5235682-CDS-M-pyrifera_M_contig95450:1..5801622816868.5235682-CDS-M-pyrifera_M_contig95450:1..580Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig95450 2..580 +
1692278225.8052096-CDS-M-pyrifera_M_contig95450:1..5801692278225.8052096-CDS-M-pyrifera_M_contig95450:1..580Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig95450 2..580 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig95450.22009.1prot_M-pyrifera_M_contig95450.22009.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig95450 2..580 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig95450.22009.1

>prot_M-pyrifera_M_contig95450.22009.1 ID=prot_M-pyrifera_M_contig95450.22009.1|Name=mRNA_M-pyrifera_M_contig95450.22009.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=193bp
LADSTKTEVVLELGVGLYNPSNVNILGVGSVCLDLFYNDTLSGEIVAQNA
DLLEGQNNVFFKGQLIDTDPVLVSTMISTFLGGNASNVRGEGRHCDGTSP
LFRAALASLALDTVLPGSPIPLIRQLEVSGIFMLPSQDLQSVLIDMNTTI
TINSVLGEHSPLVVDTVALDASLTGAGANLGKLDVPTVHVTST
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mRNA from alignment at M-pyrifera_M_contig95450:2..580+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig95450.22009.1 ID=mRNA_M-pyrifera_M_contig95450.22009.1|Name=mRNA_M-pyrifera_M_contig95450.22009.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=579bp|location=Sequence derived from alignment at M-pyrifera_M_contig95450:2..580+ (Macrocystis pyrifera P11B4 male)
CTTGCGGATTCGACGAAAACAGAAGTCGTACTAGAACTTGGAGTTGGACT
CTACAACCCAAGCAATGTGAACATCCTCGGTGTTGGATCAGTGTGCCTTG
ACTTGTTTTACAATGACACACTTTCCGGGGAAATTGTCGCACAGAATGCA
GACTTGCTTGAAGGGCAAAACAATGTCTTCTTCAAAGGACAGCTCATTGA
CACAGATCCTGTGTTGGTTTCTACAATGATTTCAACATTTCTCGGTGGAA
ATGCTTCGAATGTGAGGGGAGAAGGAAGACACTGTGATGGCACCTCGCCA
TTGTTCCGTGCTGCTCTTGCCTCTCTTGCTCTTGATACAGTCCTCCCAGG
CTCTCCCATTCCCTTGATTCGACAACTGGAGGTGTCTGGTATTTTCATGC
TTCCATCCCAGGATCTACAATCAGTCCTTATTGATATGAACACAACCATA
ACAATCAACTCTGTCTTAGGAGAACATTCTCCACTTGTTGTGGATACAGT
AGCACTTGATGCTTCACTCACTGGGGCCGGAGCTAACTTGGGAAAACTAG
ACGTCCCAACAGTGCATGTAACCTCCACA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig95450:2..580+

>mRNA_M-pyrifera_M_contig95450.22009.1 ID=mRNA_M-pyrifera_M_contig95450.22009.1|Name=mRNA_M-pyrifera_M_contig95450.22009.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1158bp|location=Sequence derived from alignment at M-pyrifera_M_contig95450:2..580+ (Macrocystis pyrifera P11B4 male)
CTTGCGGATTCGACGAAAACAGAAGTCGTACTAGAACTTGGAGTTGGACT
CTACAACCCAAGCAATGTGAACATCCTCGGTGTTGGATCAGTGTGCCTTG
ACTTGTTTTACAATGACACACTTTCCGGGGAAATTGTCGCACAGAATGCA
GACTTGCTTGAAGGGCAAAACAATGTCTTCTTCAAAGGACAGCTCATTGA
CACAGATCCTGTGTTGGTTTCTACAATGATTTCAACATTTCTCGGTGGAA
ATGCTTCGAATGTGAGGGGAGAAGGAAGACACTGTGATGGCACCTCGCCA
TTGTTCCGTGCTGCTCTTGCCTCTCTTGCTCTTGATACAGTCCTCCCAGG
CTCTCCCATTCCCTTGATTCGACAACTGGAGGTGTCTGGTATTTTCATGC
TTCCATCCCAGGATCTACAATCAGTCCTTATTGATATGAACACAACCATA
ACAATCAACTCTGTCTTAGGAGAACATTCTCCACTTGTTGTGGATACAGT
AGCACTTGATGCTTCACTCACTGGGGCCGGAGCTAACTTGGGAAAACTAG
ACGTCCCAACAGTGCATGTAACCTCCACACTTGCGGATTCGACGAAAACA
GAAGTCGTACTAGAACTTGGAGTTGGACTCTACAACCCAAGCAATGTGAA
CATCCTCGGTGTTGGATCAGTGTGCCTTGACTTGTTTTACAATGACACAC
TTTCCGGGGAAATTGTCGCACAGAATGCAGACTTGCTTGAAGGGCAAAAC
AATGTCTTCTTCAAAGGACAGCTCATTGACACAGATCCTGTGTTGGTTTC
TACAATGATTTCAACATTTCTCGGTGGAAATGCTTCGAATGTGAGGGGAG
AAGGAAGACACTGTGATGGCACCTCGCCATTGTTCCGTGCTGCTCTTGCC
TCTCTTGCTCTTGATACAGTCCTCCCAGGCTCTCCCATTCCCTTGATTCG
ACAACTGGAGGTGTCTGGTATTTTCATGCTTCCATCCCAGGATCTACAAT
CAGTCCTTATTGATATGAACACAACCATAACAATCAACTCTGTCTTAGGA
GAACATTCTCCACTTGTTGTGGATACAGTAGCACTTGATGCTTCACTCAC
TGGGGCCGGAGCTAACTTGGGAAAACTAGACGTCCCAACAGTGCATGTAA
CCTCCACA
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